RNA id: XM_043234664.1



Basic Information


Item Value
RNA id XM_043234664.1
length 3548
RNA type mRNA
GC content 0.53
exon number 22
gene id LOC122341294
representative True

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9024378 ~ 9041533 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATCTTCAGCTGGGGTGGATGGACTAACTGCTGGATGACAACACGAACACGGTCTGTTGTGAGCTGCTGGTTCATCGGTCAAGGATTAGATGGAGGAGGCAGCAGAGACTGCACAGCTGAGGCAACCAAAGGTTCAGGATGGTGGTACCCCAGTCCGGCACTCAGAAACCAAGCGTTACAGTGAGATATTACGTGATTTTGACGCTAACTTGGATCTCTCATTGACATGCTCGACTGTGGATGAGCTGCTACTAGAAGCAGACTCGCTGTCTTTAACAGACACTTCAGCAGACACCACGCTCAACGCTGATCTGGATGATATTACAGGTGAAGATGTGGAGTCGTTGAAGATCTGCCGTGAAGAGGAGGAAAAACGGAGCTGTCACCGACAGGCTTCTGTCAGTCCTGAGCTGGGTTTAGCTTGCAGAGTGAGGCATGCACACGGTCCGTTGATGCTGATGTATTCCCCCTCAGCCCAGGATGCCGACCTGACCCTGTGTCGCTGCGAGGGCGGCGTGGAGCTCGCCCTCCAGTACGCCAAAATGTGGTGCCGTTACGCCAAAGACCTCCTGACCTGGATGGACAAAAGAATCAGCCTGGAGCAAGAGTTCGCAAAGAGTATTATGAGAGCAGCAGATGCGGCCAAGTCATGCGTCGCTCAACAGGACATGATGCCTCTGCAGATCATCTACACACAGGCTCTGGAACATGATATCAAAAGCAGCACATCAGCCAAACAAACAGCTGAACTCATTCAGCAGCGCTGCTACCAGGCTCTGTCAGCCAAGAAGAACGAAATCGACAAGTGGCGACGGGAATTCAAAGAGCAGTGGTCAAAAGAGCAGAAGAGGATGAATGATGCAGTGTCTGCGCTGAAGAGAGCAAGACAGCAATACCTGCAGCGCTGTGAGGAGCTGGAGAAGGCCAAAGCCATGACGGCCAAAGCTGAAGAGGACACAGGGGGTTACAAAACCCTGGACAAGAGGAGGAAGTCCAGAGATGACGCCCAAACCAAGGTTACAGAGACCGAGATGCTCTACAGGCAGTGTGTGTGCGAGGCTAACAACCATCAAAAAGAGCTGGATAAGGTGAAGCGCAAAATCATTGTCCACATTCGCAAGCTCATCTGCCAAGGAGACACTGTGCTAAAAGAGGCAACGGTGAACATGTTTTATTACCAGCGGCAGCAGACCGAGCAGGTTCCTCTGGGCTACCAGAACTTAGAACTGACCTGCAGGCCCTGCGATCCAGGAGAACCCTACCTGCACTACATCCTGGGGAAGAACCTGCCCGAACAACCTCTCCAGAACTTCATATTTCAGGAGTTCACCCCCCAGAACAAGAGATCCCCACCGACAGGTCGACGTAAACAGAGCACTGCTCTGAGTTATCAACAAGATTCGTACGTGTTACCAGAGGAACTGAAACACAGCAGCAGTTTAGTAGATGGACGACGCCCCGGTCACAGCGACAGAGACAGCACCGGAGGAAGTCTTGAGTCGCTGTCCAGTCCAGCTTATGGGAACCGTAAGCTGCCCAAGGCCTCCTCCACGGGAACCATGTCTTCAGATGATCTTGATGAGAAAGACTCTCTGCAAGAAGCAGAGAGCGAAGAGGGTTTGTCTGACAGCAACGGGATGACCTGCAAACCACGAAATGCGTCCCGTGCCGCACTGACTCacagactgaaaaaaatgaagagCAAGATGGTCAAGTGTAAGCAATGTGACAATTACATCCTGGTCAACGGGATTGAGTGCGAAGAGTGTGGCCTTGCAGTCCACAGGAAGTGCCTGGAGGTGTGCCAGTTGGAGTGCGAGCACCGGAGAGGCTTCATCTTTGGGATGGAGTTCTCCCTGCTGCCCCGGGAGAGCCAGGACTCTGTGCCCTTCGTAGTCCTGCGCTGCACGGAAGAGATTGAGAACAGGGCTCTCGGAGTCCAGGGGGTTTACAGAATCAGTGGATCCAAACCTCGCATTCTGAAGTTATGTCAGGCTTTCGAAATTCAGAAAGACCAAGTTGACCTTAGTGACCTCTCGCCTCATGACATCAGTTCCGTACTCAAGCATTTCTTCAAAgagCTTCCAGAGCCGTTGCTCACCTTTGACCTTTACAACGACTTCATCGGTGTGGGCAAGGAGATTCAGAGGCTTAGTGAAAAGGACCACGCATCCGAGACTGCTGGGATTGTGACGAGCACTGTGGCCAAACTCAAAGAGCTCATCGGACGACTGCCTCTGTGTAACTACAACGCAGTGCAGCACATGATGGCCCACTTGAACAGGGTTGCAGAACATTATGAGGACAACAAGATGTCTCCAGGAAACCTCGGCATTGTGTTCGGCCCCACTCTCCTGCGGCCCCTGGTGTCAGGAGACGTGTCTATGATTGCTCTGCTGGAAACCAGCTACCAGGCTCTTCTCGTGGAGTTTATGATCTCAAACTACGAGCACATATTCGGTCCCGCCACGAGATCCAGCACGCCTCCTCCACCGCCTCCCACGGCACCGCTCCCAGACACCCCTCCTCCCAGAGCCTCGTGTCCCTCTCAGGACCCCGAAGCCACGGGCAGGGAGCGTCCGCGCTCTCTGGAGAATCGCACTATCAAGAGAGAATCAAGTGAGGGTTATATTTCTGACAAGTCATCCTCCAATGAAGCAATGGACCAGCTGAGCCCAGAAGCCATTGAGAGAGCAGTCCTGGCTCTGAGGGCCGCGGCATCTCCTCAGGTGCATTCGGAGCAGGCTGCGGAAAGTCAATTGCAAACTCAGTCGAGGGCTCACTTCAGCAGGCAGCCAGTGAAGTACCACAGGCAGGGTTCGGCAGGAGCGCAGCTACGCAAAGCCAGCTCTCAGTCGTGGGACGAGGACATTTCCGGGAGCAGGGAAGCACTTGCGTCGAGAAGTGCGCGCAGCAGTCGCAGCTCCTCTCCCGAGCTCAAGGGTCCCATAAAAACTCACTGCCGATTGCACGAGACCCCTGCCCCGCAGGATACGGCTGCATGCACCCCTGAGAGTCAGGCCGCGGTGAAAAACAGTGTATGGGATGAGGGGGTTGAAGCTGTAGCTTCTGGACCAATGGGAAAACTAAATACCAACCAATCAAACAACGCCATGGGGGGGAGAGAGCGCCTGATCCGATCCCTGAGGAGGCACCCGACAGAGGAGAAACTGGCCCAAAAGGTTCTGTCCGGACTGAAGCTTAAACGCAGTGATTCAGGGAGGGGCGAGCAGCTTCATTTTGTTTGACAGCGACTGAAACAACTTGTCTCGTTCACTTAACTTCTGGGGTTCCTTAATTTCACTGGAGCGCATCCCACTTTGCCGAGTATTTTTAGCACAGCTGTACATTTTTAGTTTCCCTGCTTTGCGGCACATGACGTACGGTGCGGCTAAATCACAGCACAGATGGTAGTTCCCTTTCTCACTGGAAATTTGGCACAGATTTACCTGTGTTTCTTTGAGATGCATAGACTGCCTGTCTTGTATAGATGTTGGATGCTGAATCATGAGTCCTTCGGGGATGAATATGCAATATAtggaaacagaa

Function


GO: NA

KEGG:

id description
K20653 GMIP, ARHGAP46; GEM interacting protein

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU27303 lncRNA upstream 12200 9011693 ~ 9012178 (+) False pgls
TU27283 lncRNA upstream 35768 8987053 ~ 8988610 (+) False LOC122341292
TU27278 lncRNA upstream 142256 8881198 ~ 8882122 (+) True G18261
TU26937 lncRNA upstream 282076 8514149 ~ 8742302 (+) False G18048
TU27339 lncRNA downstream 141007 9182540 ~ 9183276 (+) False brd4
TU27326 lncRNA downstream 142866 9184399 ~ 9185581 (+) True LOC122341719
TU27353 lncRNA downstream 208566 9250099 ~ 9250630 (+) True G18303
TU27355 lncRNA downstream 220437 9261970 ~ 9262239 (+) True G18305
TU27527 lncRNA downstream 372111 9413644 ~ 9414007 (+) True G18425
XM_043225627.1 mRNA upstream 2732 9013095 ~ 9021646 (+) True colgalt1a
XM_043225635.1 mRNA upstream 12263 9010050 ~ 9012115 (+) True pgls
XM_043234662.1 mRNA upstream 35568 8980591 ~ 8988810 (+) True LOC122341292
XM_043230932.1 mRNA upstream 44502 8976324 ~ 8979876 (+) True LOC122333359
XM_043235775.1 mRNA upstream 169613 8835129 ~ 8854765 (+) True LOC122342001
XM_043225839.1 mRNA downstream 1905 9043438 ~ 9064147 (+) True lmx1al
XM_043235532.1 mRNA downstream 26113 9067646 ~ 9083475 (+) True atp13a1
XM_043230019.1 mRNA downstream 42831 9084364 ~ 9089675 (+) False LOC122332643
XM_043230027.1 mRNA downstream 42974 9084507 ~ 9089675 (+) True LOC122332643
XM_043229555.1 mRNA downstream 52282 9093815 ~ 9127734 (+) True pbx4
TU26907 other upstream 461002 8260084 ~ 8563376 (+) False LOC122342110
TU26987 other upstream 473227 8544460 ~ 8551151 (+) False LOC122331854
TU26936 other upstream 499644 8513349 ~ 8524734 (+) True G18048
TU26932 other upstream 507924 8513349 ~ 8516454 (+) False G18048
TU26858 other upstream 871553 8150770 ~ 8152825 (+) False LOC122341282
TU27323 other downstream 142995 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other downstream 142995 9184528 ~ 9185581 (+) False LOC122341719
TU27599 other downstream 653099 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 698263 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 757282 9798815 ~ 9799755 (+) True hbbe1.3

Expression Profile


XM_043234664.1 Expression in all Baseline Samples

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XM_043234664.1 Expression in each Bioproject

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XM_043234664.1 Expression in each Sample
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