RNA id: XM_043234690.1


Basic Information

Item Value
RNA id XM_043234690.1
length 1299
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC122341339
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20071944 ~ 20077001 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAATcAGACAACAGAAAACCAAACCtccagcaacagcagcagcggTAGCGGTGGCCCTGCTAAAAGAAGCAGCACTTCTGGAAATAGTTCCACCAGCGTTGTTAAAAGACAAGGCAGCATCGGTTCTAGTAGTTACAGCAGCGCCAAAGTGTCTGTCAGCGACAATGCTGGCACTAGTACCAGCGGTGCCACTAAAGGCAGAAGTGTCACCAATAGTATTAAAGGGGCCACCAAAAATGACAGAAGAGGTAGCGTGGTGAACCCGGTGGAGGAGGTCTTGATGCTGTCCTCAGGGAAGAAGCTGGAGGAGGAGCCACTCGGTGGTGAAGTCGGGGTTCCTTCCAGCAATGCTTCATCACTCGATATCAAGCTTGAGTCCTCTCCCTCTTCATCGCTCAGTCAGTCCTCGGGCTGCTCTGACACAGACGGTACTAAGAATCGATTGGGCACTGAAAGCGGCTATTCATCTCTGGAGAAGACAAGTTCAAGTCCAAGAGTTGTGgatgcagagacacacactgatACCAGACCTCAGGAAGCTGTTCAACAAGAGGGTTCATTTCTAGATGCCAAGGTTTCCCCCTCAACCCCTACATCCTCTACTGAACAAAAAGACCATAAGACAACTGTTACTTCTCAGGCTTCCTTCACTAATGATATTCCTGATCACTCACAACATTTGATATCATGTAGTCTCCGCTCAAAATCGCTGGAGCGCAGACCGCTTGACTCCACGGCCACAcCTGACCTCCTTAATTTCAAAAAGGGATGGATGTCTAGACTGGGAGAGGATGGAAAGTGGCGGAAACACTGGTTTGTTCTTACAGACCAGACTTTGAGATTCTATCGTGACTCTGCAGCAGAAGAGgcAGCTGATGTGGATGGTGAGATCAACTTGTCTACTTGCTACGATGTTACAGATTTCCCTGTGCAAAGGAACTATGGCTTTCAGATTCATACAAAGGATGGAGTGTTCACCCTTTGTGCAATGACTTATGGGATACAGCGCAACTGGGTCCAGGCAGTAATGAAAAACATTCGTCCCGCCATTGCCCCAGATGTCACGTGTTCAATTCCTCAGAAGGTGCCAATGACTAGTACACATGCTCGTACAAGCTCCTGCCAATGCAAAACAGTTTCACAGGAGTCCGAGCAAAGGAGTCGCATCCGTGAGCGCCGTAGAGAGGGGCGCTACAAAACCTTTGATTGGGCAGAATTGAGTTGTAAACATCACAAGGAGGAGTTGTCAAATGATCCATCTGGAAGGCAGTGGAACCATAACGGCGGCGCTCACTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32079 lncRNA upstream 6068 20064960 ~ 20065876 (+) False LOC122341338
TU32026 lncRNA upstream 101525 19954076 ~ 19970419 (+) True G21558
TU32062 lncRNA upstream 120013 19928729 ~ 19951931 (+) False G21586
TU32061 lncRNA upstream 120310 19948081 ~ 19951634 (+) True G21586
TU32016 lncRNA upstream 161261 19903586 ~ 19910683 (+) True G21554
XR_006250469.1 lncRNA downstream 83435 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA downstream 83435 20160436 ~ 20161205 (+) False LOC122341550
TU32179 lncRNA downstream 91635 20168636 ~ 20173002 (+) True G21652
XR_006250526.1 lncRNA downstream 96693 20173694 ~ 20185526 (+) True LOC122342124
TU32185 lncRNA downstream 153014 20230015 ~ 20314144 (+) False G21655
XM_043234689.1 mRNA upstream 2691 20064270 ~ 20069253 (+) True LOC122341338
XM_043234998.1 mRNA upstream 50204 20010133 ~ 20021740 (+) True LOC122341548
XM_043234688.1 mRNA upstream 72356 19998493 ~ 19999588 (+) True LOC122341335
XM_043234687.1 mRNA upstream 73472 19987506 ~ 19998472 (+) True LOC122341334
XM_043233554.1 mRNA upstream 130364 19930733 ~ 19941580 (+) True pold1
XM_043234691.1 mRNA downstream 1 20077002 ~ 20082045 (+) True LOC122341340
XM_043234997.1 mRNA downstream 17850 20094851 ~ 20113498 (+) True LOC122341546
XM_043234692.1 mRNA downstream 71513 20148514 ~ 20160181 (+) True LOC122341342
XM_043235916.1 mRNA downstream 108534 20185535 ~ 20195721 (+) True eftud2
XM_043225769.1 mRNA downstream 124275 20201276 ~ 20229670 (+) False gjc1
TU32077 other upstream 3943 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other upstream 3943 20066130 ~ 20068001 (+) False LOC122341338
TU31603 other upstream 668768 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 668768 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 668768 19399871 ~ 19403176 (+) False ypel3
TU32169 other downstream 29845 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 108566 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 110527 20187528 ~ 20188083 (+) False eftud2
unassigned_transcript_291 other downstream 237259 20314260 ~ 20314331 (+) True trnac-gca_3
TU32806 other downstream 1218701 21295702 ~ 21414286 (+) True G22087

Expression Profile