RNA id: XM_043234691.1


Basic Information

Item Value
RNA id XM_043234691.1
length 3265
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC122341340
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20077002 ~ 20082045 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCTGCACCTGCATCATCCCCTGAAGAGCAGATCTCACGTTCAGCCCCTGAGGCAACGAATGAGtatcttcagaaaaaaagagtcTCACAGAGGCAAAGCCTAAACATCATGTCAGCTGATATACCATCAAACTTATCACTTATTGCAATGCCCAGTCGCACCTCCCCAGAATCAATCAGCCCAGACAGCTTAGAGGTTGATGCAGGAACCATATATGTGCCCTGTGATGGTCATGGTGAACTACTGGAAGCTAAACCCAAACAAGAAAACCAGGTTGATCGCTCCACATCTCCATTGCCAGTCTCCTTCTCTTCAACTTCAGCGCAGACTGAATGGCAGTGGGATGTGGAGCTTCAGAGCCTGCGTAGAGAACTGAAGGCTGAGCACGAGAGGAATCAGACTGAAGAAAAGGAGTTAAGACTCAGTGAGGCCAGACTCCAAGCTGAGCTTAGTGACAGCAAGGAATGTCTTCAGAGGACAGAGTTAAAGATTCAAGATGCAGAAACTCTTCTGAAGGAGCGTGAGGAGGTGCTGGAGAGTCTGCGTGGGCAGTTGGAAGAGGTAACGGGTCGCCTTAAAGCAACCGAAGAGGCACAAGCCTTGAAAGAGGTCAGGCTACAGAGGCACCTGCGCCTCCTTCAAGAGAGCCAGGAACGAGAAAGGAGGAGCTTCAGTGACAGCCTCGACCAATCAGAACAGCGTTCGAAGGAACTAGAGGAGCGTCTCAGGCAGAAAGAGGCTGAACTGCAGAAAAGGCCAACAGGGGACATTACTGATGAACTTCTGCGAAGGTGCCAGGAGCTACAAAACCAGCTGGAAGAGTCAGACAGTGAGGTTTGTCGTCTGCAGGCACGCCTCCAAACTGAAGAGACTCTTTATTATGATATGGAGCATGATTATGAAAGAGCTTGTGAGGAGCTACAGACCCTGCGGGGTGCTCTGCTGGACTGCGAGAGGGTAAGCGAGGAGCGCTTTCAAACCCAGCTGGTGCAACAACAGAAAGAGATAGACAGGAAGGAACAAGAACTACAGGAAGTGCTTCTTAAGatggccatcttgggcagtAGTTTAGAGGAGACCGAGCAAAGGCTCAAGCAAGCTCAATCTTCTGAAGCTAATGTTTTCTGTGAGGCATTGATTGAGCCACAACAGTGCAGACAGAAATGGCAGAGTGATTTGGAAATGCAACCCACTACTCAGGTAGACGAGTCCCATAGAGTGATCTCTGTAATCCAGGCGCTAGAGAGCAAGTTGTGTGACACAGAAGAGCGACTTCGGGAGCTTACCATGCatcttcagcagcagcagcagcaacagctcAACACTGGACCGCATGGACTCAGTGATTCTTGTTTTACTGAAGCTTTAGACAGAGCCTCAGACAAAGTTAAAGCTCCCCTTTATGATGATGGAAAGCCTGGAAGGCAGAGTTTGGTTGGCGAAAGTTCAGGAAGAAATCAGTCTTTAGAGATGGCCTGCAGTGTTTTGTCACTGGAGGCACTGATTATCCAACGGATTGCCTCTGCACTTGAGCATCCCAGCTCAAATTTGCTTAATAAGTTGTCAGAAGTGCATGTCCAGGTGCTTAGGATGGCTCAAGGAGGAAGTCATAATGGGTCTTTGGATCCTAGTTACTCACAGGTCTTCTTGGACCCTCTTGAGGAAGATCTGGTAGACAGAGCAAAGGGATCTGAGCTTTTTATGTCTTGCCTTGGCCAGAGAGTTCCTCATCTGGAACCAAAATGGAAAACAGTTCAAGCAGGGGACAGACTTGCTGACATTAGTCCGCCAGAGCTTGCACCATACAGTGAACAAATGGACGATGAAATGGCGACCGATCTTCTTCTAGAGGGCTCTGAGGTACAGCTTGCTTGCAGAAAGAGTCTGGTGGCAGAGCTACGTGCTCAggcccattcactgcagaatcTCTCAACACAGCTACAGTCCACTGTTAGAGAAACCGATCTTCCTGGTGAACTACCCTCAGCCATCCTGAGGGCTGCAATTTGTCAGGCCACTTTGGCATACATGGCCTGTCGTCTTCGTTCTGCCCTGCAGCAGGAGATGAAGACTAATGCTCAACTGAGGACGGAAGAAGCCAAAAAATTGCAGTTGGAGTTTGAGGAGAAGCTCCAAGAGCTCCAGAAAATCCATGAAGAGGAGATGAGCCGTCTTCATGAATATTACATTGAAACCTTGTCAAGGCCAAATGCTGCAACTCTCTCAGAACTAGAGGAGAATGAAGAGAAGGTGACTGCTCTGCAAGACCGAATCAGAGAGCTTGAGACTGAGGTGACTTGTTTGAAGACGGATCTTAGTAACCAGGATGTCAAAGCCTTCAAGCTTGACCTGGAAACCATCAAGACCACGTATGAGCATGGTTTCAGCATTATGGAAGATAGCCACCAGCGAGTGATTGAGGAGATGCAGAGGCAGCATCAGAAAGAGGTGGAGAGACTGACAGAGGAACGAGAAAGAGTACTGCAGGAGGAGACGAATGCCACCATTGCAGctATTGAGGCTATGAGGAAAGCTCATAAAGAGGAAATGGATAAGACACAGAAAGCCCTGCAAAATGGAGCCAATGTGGACATCCGCCAGCTTCATGCACAATACAATGAGGAGCTGGAAACTTTGCACAGGGAGCTGGAAGTGTTGTCAGAGCAGTATTCTCAGAAATGCCTGGAAAATACTAATTTGAATCGGACTATAGAAACAGAAAGGGAATCATTGAGTACAACGCAGAGAGAGAACCAGGAGCTTCACATTCACAACCAGGAATTAAATGAGTTTTTGGCATCTGAATTGTCCCTGATGCATTCACGCATGAATGGGGAGGTGAAACATTCACAATCTTCTCAGGAGAAAGACGTGTATCAGCTGGAGGTAAATCTCAGAGTAAAGGAATCGGAGATTAAGTGTCTGAAACAGGAGATCAACTCACTTAAACTGGAACTGCAGGCGGGAAATATGtattttaaagaaCTAAACTCTGAGCTGGTTGCTTCAGAAGTCAAAACTCAAAGTGACTTAAATAAACTAAGGATGGCGCCAGCAAGACAACACAGTTTAAAATACGATCTGATGAAATCCAGGAGCAACCCAGACTTCCCAAAGGACCATGCTACTCTTACGCAGACCGTCAGATCCAAGAGTCTTAAAGATGGACTCACAGTTCAGGAGAGGATGAAGCTTTTTGAATTAACCAGCACGCAAAAGAtttgactctgtgtgtgtgcgtctgtgtgatagagagagagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32079 lncRNA upstream 11126 20064960 ~ 20065876 (+) False LOC122341338
TU32026 lncRNA upstream 106583 19954076 ~ 19970419 (+) True G21558
TU32062 lncRNA upstream 125071 19928729 ~ 19951931 (+) False G21586
TU32061 lncRNA upstream 125368 19948081 ~ 19951634 (+) True G21586
TU32016 lncRNA upstream 166319 19903586 ~ 19910683 (+) True G21554
XR_006250469.1 lncRNA downstream 78391 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA downstream 78391 20160436 ~ 20161205 (+) False LOC122341550
TU32179 lncRNA downstream 86591 20168636 ~ 20173002 (+) True G21652
XR_006250526.1 lncRNA downstream 91649 20173694 ~ 20185526 (+) True LOC122342124
TU32185 lncRNA downstream 147970 20230015 ~ 20314144 (+) False G21655
XM_043234690.1 mRNA upstream 1 20071944 ~ 20077001 (+) True LOC122341339
XM_043234689.1 mRNA upstream 7749 20064270 ~ 20069253 (+) True LOC122341338
XM_043234998.1 mRNA upstream 55262 20010133 ~ 20021740 (+) True LOC122341548
XM_043234688.1 mRNA upstream 77414 19998493 ~ 19999588 (+) True LOC122341335
XM_043234687.1 mRNA upstream 78530 19987506 ~ 19998472 (+) True LOC122341334
XM_043234997.1 mRNA downstream 12806 20094851 ~ 20113498 (+) True LOC122341546
XM_043234692.1 mRNA downstream 66469 20148514 ~ 20160181 (+) True LOC122341342
XM_043235916.1 mRNA downstream 103490 20185535 ~ 20195721 (+) True eftud2
XM_043225769.1 mRNA downstream 119231 20201276 ~ 20229670 (+) False gjc1
XM_043225734.1 mRNA downstream 120088 20202133 ~ 20229670 (+) True gjc1
TU32077 other upstream 9001 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other upstream 9001 20066130 ~ 20068001 (+) False LOC122341338
TU31603 other upstream 673826 19399832 ~ 19403176 (+) False ypel3
TU32169 other downstream 24801 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 103522 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 105483 20187528 ~ 20188083 (+) False eftud2
unassigned_transcript_291 other downstream 232215 20314260 ~ 20314331 (+) True trnac-gca_3
TU32806 other downstream 1213657 21295702 ~ 21414286 (+) True G22087

Expression Profile