RNA id: XM_043234692.1


Basic Information

Item Value
RNA id XM_043234692.1
length 5428
RNA type mRNA
GC content 0.48
exon number 22
gene id LOC122341342
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20148514 ~ 20160181 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCCTATCGAGAAAGCACTAGTTAGCGGAACGGCTAGACTACGCCATTGAGAACCACGCTCGTTCAGGGCTTTGTTTCGACGTTTCTTTTCAGAAGAGCTGAACTCTCCGTAATATGTTAATATCGCGTTTAGATCCTTGTATCAGGCAGGTTTCCGTCTGACTCCACAAATCTCTAACAATAAGTGAAAGGACTGAAGGGACAGGAAGATATGAACGGCACGGACACCGTCGATAAATGAAGACATCGAGAAGCCACCTTAccgttttttaaataaattaaaccacaTTTATTCACTTGAAAATTAATTACTTAGCCATTTTactttacaaaaagtaaatgttgACACATTCACCATTCACCCCCAAAACGATGTTTTCTGCACGTGAGAATCGGTGTCATCGTTTTCAGGCCAACATCttcaataaaagtaaatgtcaaAACTGCTTCAAACCCGTGGATTCACACATACTCAGCGAAGCAGATCTGATTCAGACTAAGCCTGTCCAGGTGGGCTGGCTGCTCCTGGCCCCAGAGGACGCTGACTTCAGCAGTTGTGTCCCCAGAAAACGGAAATGGCAGAGGAGATATTTTGTGCTTTACGAGCATGGGCTTCTGAGATACTCTCTGGATAAGATGCCAAGTACATTGCCCCAAGGAAGTGTAAACATGTCCCAATGCTGTGAGGTTCTTGATGCTTCATCGCAAACTGGCTTCCAGAACTGCCTGAGGTTGTGCTTCACTGACAGAGACTACTACATCCGAACAGAGAGCACAGATGGCTTCAGCATCAGTAGgTGGCAGGAAAATCTGATTGTTTACCCTAAGGCTGCGAAATCAAATCAGAAGAAGAAGGGGAAGGATCCAGCCCACCCACCGCAAcAGACAACAGAAAACCAAACCtccagcaacagcagcagcggTAGCGGTGGCCCTGCTAAAAGAAGCAGCACTTCTGGAAATAGTTCCACCAGCGTTGTTAAAAGACAAGGCAGCATCGGTTCTAGTAGTTACAGCAGCGCCAAAGTGTCTGTCAGCGACAATGCTGGCACTAGTACCAGCGGTGCCACTAAAGGCAGAAGTGTCACCAATAGTATTAAAGGGGCCACCAAAAATGACAGAAGAGGTAGCGTGGTGAACCCGGTGGAGGAGGTCTTGATGCTGTCCTCAGGGAAGAAGCTGGAGGAGGAGCCACTCGGTGGTGAAGTCGGGGTTCCCTCCAGCAATGCTTCATCACTCGATATCAAGCTTGAGTCCTCTCCCTCTTCATCGCTCAGTCAGTCCTCGGGCTGCTCTGACACAGACGGTACTAAGAATCGATTGGGCACTGAAAGCGGCTATTCATCTCTGGAGAAGACAAGTTCAAGTCCAAGAGTTGTGgatgcagagacacacactgatACCAGCAGACCTCAGGAAGCTGTTCAACAAGAGGGTTCATTTCTAGATGCCAAGGTTTCCCCTCAACCCACATCCTCTACTGAACAAGAAGACCATAAGACAACTGTTACTTCTCAGGCTTCCTTCACTAATGATATTCCTGATCACTCACAACATTTGATATCATGTAGTCTCCGCTCAAAATCGCTGGAGCGCAGACCGCTTGACTCCACGGCCACAcCTGACCTCCTTAATTTCAAAAAGGGATGGATGTCTAGACTGGGAGAGGATGGAAAGTGGCGGAAACACTGGTTTGTTCTTACAGACCAGACTTTGAGATTCTATCGTGACTCTGCAGCAGAAGAGgcAGCTGATGTGGATGGTGAGATCAACTTGTCTACTTGCTACGATGTTACAGATTTCCCTGTGCAAAGGAACTATGGCTTTCAGATTCATACAAAGGATGGAGTGTTCACCCTTTGTGCAATGACTTATGGGATACGGCGCAACTGGGTCCAGGCAGTAATGAAAAACATTCGTCCCGCCGTTGCCCCAGATGTCACGTGTTCAATTCCTCAGAAGGTGCCAATGACTAGTACACATGCTCGTACAAGCTCCTGCCAATGCAAAACAGTTTCACAGGAGTCCGAGCAAAGGAGTCGCATCCGTGAGCGCCGTAGAGAGGGGCGCTACAAAACCTTTGATTGGGCAGAATTGAGTTGTAAACATCACAAGGAGGAGTTGTCAAATGATCCATCTGGAAGGCAGTGGAACCATAACGGCGAGCGCTCACTGCCTCCTGCACCTGCATCATCCCCTGAAGAGCAGATCTCACGTTCAGCCCCTGAGGCAACGAATGAGtatcttcagaaaaaaagagtcTCACAGAGGCAAAGCCTAAACATCATGTCAGCTGATATACCATCAAACTTATCACTTATTGCAATGCCCAGTCGCACCTCCCCAGAATCAATCAGCCCAGACAGCTTAGAGGTTGATGCAGGAACCATATATGTGCCCTGTGATGGTCATGGTGAACTACTGGAAGCTAAACCCAAACAAGAAAACCAGGTTGATCGCTCCACATCTCCATTGCCAGTCTCCTTCTCTTCAACTTCAGCGCAGACTGAATGGCAGTGGGATGTGGAGCTTCAGAGCCTGCGTAGAGAACTGAAGGCTGAGCACGAGAGGAATCAGACTGAAGAAAAGGAGTTAAGACTCAGTGAGGCCAGACTCCAAGCTGAGCTTAGTGACAGCAAGGAATGTCTTCAGAGGACAGAGTTAAAGATTCAAGATGCAGAAACTCTTCTGAAGGAGCGTGAGGAGGTGCTGGAGAGTCTGCGTGGGCAGTTGGAAGAGGTAACGGGTCGCCTTAAAGCAACCGAAGAGGCACAAGCCTTGAAAGAGGTCAGGCTACAGAGGCACCTGCGCCTCCTTCAAGAGAGCCAGGAACGAGAAAGGAGGAGCTTCAGTGACAGCCTCGACCAATCAGAACAGCGTTCGAAGGAACTAGAGGAGCGTCTCAGGCAGAAAGAGGCTGAACTGCAGAAAAGGCCAACAGGGGACATTACTGATGAACTTCTGCGAAGGTGCCAGGAGCTACACCAGCTGGAAGAGTCAGACAGTGAGGTTTGTCGTCTGCAGGCACGCCTCCAAACTGAAGAGACTCTTTATTATGATATGGAGCATGATTATGAAAGAGCTTGTGAGGAGCTACAGACCCTGCGGGGTGCTCTGCTGGACTGCGTGCAACAACAGAAAGAGATAGACAGGAAGGAACAAGAACTACAGGAAGTGCTTCTTAAGatggccatcttgggcagtAGTTTAGAGGAGACCGAGCAAAGGCTCAAGCAAGCTCAATCTTCTGAAGCTAATGTTTTCTGTGAGGCATTGATTGAGCCACAACAGTGCAGACAGAAATGGCAGAGTGATTTGGAAATGCAACCCACTACTCAGGTAGACGAGTCCCATAGAGTGATCTCTGTAATCCAGGCGCTAGAGAGCAAGTTGTGTGACACAGAAGAGCGACTTCGGGAGCTTACCATGCatcttcagcagcagcagcagcaacagctcAACACTGGACCGCATGGACTCAGTGATTCTTGGTGCTCGCGCAGTTCCCTCCATAATCCGGAGGGTCGGCTCTCTGTGGATTCTCTGCCAAGTTTTACTGAAGCTTTAGACAGAGCCTCAGACAAAGTTAAAGCTCCCCTTTATGATGATGGAAAGCCTGGAAGGCAGAGTTTGGTTGGCGAAAGTTCAGGAAGAAATCAGTCTTTAGAGATGGCCTGCAGTGTTTTGTCACTGGAGGCACTGATTATCCAACGGATTGCCTCTGCACTTGAGCATCCCAGCTCAAATTTGCTTAATAAGTTGTCAGAAGTGCATGTCCAGGTGCTTAGGATGGCTCAAGGAGGAAGTCATAATGGGTCTTTGGATCCTAGTTACTCACAGGTCTTCTTGGACCCTCTTGAGGAAGATCTGGTAGACAGTACGCTAAGTGAAAGTGCAATCCATAGGCTGTGTGTAAGATCGGAGACGACATACCTCATACATATTCTCTGTACTCATCCCTCACAGGAGCAAAAGGGATCTGAGCTTTTTTATGTCTTGCCTTGGCCAGAGAGTTCCTCATCTGGAACCAAAATGGAAAACAGTTCGAAGCAGGGGGACAGACTTGCTGACATTAGTCCGCCAGAGCTTGCACCATACAGTGAACAAATGGACGATGAAATGGCGACCGATCTTCTTCTAGAGGGCTCTGAGGTACAGCTTGCTTGCAGAAAGAGTCTGGTGGCAGAGCTACGTGCTCAggcccattcactgcagaatcTCTCAACACAGCTACAGTCCACTGTTAGAGAAACCGATCTTCCTGGTGAACTACCCTCAGCCATCCTGAGGGCTGCAATTTGTCAGGCCACTTTGGCATACATGGCCTGTCGTCTTCGTTCTGCCCTGCAGCAGGAGATGAGTGCCCTACGCAAGCAGAGAGAGCAGGCTGAGTGTGAGTGTCGTGCCGTGTGTCGTAGCATGGAGACTCTTTTCCAGGAACAGACAGAGCGCTATGAAGAGAAGCTGCGCGAGGAGCGTGTTGTTGTGGAAAAGGCAGAGCAGGAGCGTGTTTCGGCAGAGACTAATGCTCAACTGAGGACGGAAGAAGCCAAAAAATTGCAGTTGGAGTTTGAGGAGAAGCTCCAAGAGCTCCAGAAAATCCATGAAGAGGAGATGAGCCGTCTTCATGAATATTACATTGAAACCTTGTCAAGGCCAAATGCTGCAACTCTCTCAGAACTAGAGGAGAATGAAGAGAAGGTGACTGCTCTGCAAGACCGAATCAGAGAGCTTGAGACTGAGGTGACTTGTTTGAAGACGGATCTTAGTAACCAGGATGTCAAAGCCTTCAAGCTTGACCTGGAAACCATCAAGGCCACGTATGAGCATGGTTTCAGCATTATGGAAGATAGCCACCAGCGAGTGATTGAGGAGATGCAGAGGCAGCATCAGAAAGAGGTGGAGAGACTGACAGAGGAACGAGAAAGAGTACTGCAGGAGGAGACGAATGCCACCATTGCAGctATTGAGGCTATGAGGAAAGCTCATAAAGAGGAAATGGATAAGACACAGAAAGCCCTGCAAAATGGAGCCAATGTGGACATCCGCCAGCTTCATGCACAATACAATGAGGAGCTGGAAACTTTGCACAGGGAGCTGGAAGTGTTGTCAGAGCAGTATTCTCAGAAATGCCTGGAAAATACTAATTTGAATCGGACTATAGAAACAGAAAGGGAATCATTGAGTACAACGCAGAGAGAGAACCAGGAGCTTCACATTCACAACCAGGAATTAAATGAGTTTTTGGCATCTGAATTGTCCCTGATGCATTCACGCATGAATGGGGAGGTGAAACATTCACAATCTTCTCAGGAGAAAGACGTGTATCAGCTGGAGGTAAATCTCAGAGTAAAGGAATCGGAGATTAAGTGTCTAAAACAGGAGATCAACTCACTTAAACTGGAACTGCAGGCGGAAATATGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32079 lncRNA upstream 82638 20064960 ~ 20065876 (+) False LOC122341338
TU32026 lncRNA upstream 178095 19954076 ~ 19970419 (+) True G21558
TU32062 lncRNA upstream 196583 19928729 ~ 19951931 (+) False G21586
TU32061 lncRNA upstream 196880 19948081 ~ 19951634 (+) True G21586
TU32016 lncRNA upstream 237831 19903586 ~ 19910683 (+) True G21554
XR_006250469.1 lncRNA downstream 255 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA downstream 255 20160436 ~ 20161205 (+) False LOC122341550
TU32179 lncRNA downstream 8455 20168636 ~ 20173002 (+) True G21652
XR_006250526.1 lncRNA downstream 13513 20173694 ~ 20185526 (+) True LOC122342124
TU32185 lncRNA downstream 69834 20230015 ~ 20314144 (+) False G21655
XM_043234997.1 mRNA upstream 35016 20094851 ~ 20113498 (+) True LOC122341546
XM_043234691.1 mRNA upstream 66469 20077002 ~ 20082045 (+) True LOC122341340
XM_043234690.1 mRNA upstream 71513 20071944 ~ 20077001 (+) True LOC122341339
XM_043234689.1 mRNA upstream 79261 20064270 ~ 20069253 (+) True LOC122341338
XM_043234998.1 mRNA upstream 126774 20010133 ~ 20021740 (+) True LOC122341548
XM_043235916.1 mRNA downstream 25354 20185535 ~ 20195721 (+) True eftud2
XM_043225769.1 mRNA downstream 41095 20201276 ~ 20229670 (+) False gjc1
XM_043225734.1 mRNA downstream 41952 20202133 ~ 20229670 (+) True gjc1
XM_043225743.1 mRNA downstream 41952 20202133 ~ 20229670 (+) False gjc1
XM_043225728.1 mRNA downstream 41952 20202133 ~ 20229670 (+) False gjc1
TU32169 other upstream 40678 20106846 ~ 20107836 (+) False LOC122341546
TU32077 other upstream 80513 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other upstream 80513 20066130 ~ 20068001 (+) False LOC122341338
TU31603 other upstream 745338 19399832 ~ 19403176 (+) False ypel3
TU32173 other downstream 25386 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 27347 20187528 ~ 20188083 (+) False eftud2
unassigned_transcript_291 other downstream 154079 20314260 ~ 20314331 (+) True trnac-gca_3
TU32806 other downstream 1135521 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 1477562 21637743 ~ 21734127 (+) False crhr1

Expression Profile