RNA id: XM_043234696.1


Basic Information

Item Value
RNA id XM_043234696.1
length 3725
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC122341346
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21316273 ~ 21329556 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGACACAGAGGATTTCTGCTCTCAGCTTGCAACGGTCTTCTGGAACGCTGCCAGCATATGTCCTCCTGGCCATAGAGGAGCACTGGAGAGTGAGAGATCCACAAGTGTATGCCTCCATAGTAAGCCTGTACTTGCTTCCCAGAGACCAGCCACTCTCCTGCTGTATGACGATGTGGTGCAGCTACTGTTGGGTTCTCCAGGATCCCGGAGACAGCCGTGGGTACAGCTACAGAGAAGAGCCATTCGTCCACCCCTAAACACCTCCCAAATCACCCTCTCTGCAATGCTCACCTCTTCCCGCAGTCAGTATGAGCTTGGGGGCTTTCCTTACCCCCTTGCCTTGGAGAACAACTCGACAGgATCCAACAGTAGCTGGATGGAGCTAACTGCTCTAGCTGCAATGTGTGCTCAGCTCACTGGGCCCAACGGCACTGAGGTCCAAGTATCAGAACCCATCCACATCTCCATCCCCCTTCCTTCTGATTCACCTCTCAAGACTGCCACCAGTGTCCCAGTATGGAGGTTCGAAGACAGGACAGGTCTGTGGGTCAGAAGTGGTGCTggatacattaaaaaagaagGCACTCAGATGACATGGAGTTTTGTGGCTCCAAATTTAGGATACTGGCTTGCAGCATTTCCCTCAACCTCAGGAGCAGGCCTGAACACCTCTGGACTAAGGGACATCACTACCTATCACACTATTTTCCTGCTAGCGATTCTGGGTGCCATGGCCCTGCTAGTGCTTATTCTGCTGTGTTTGTTGCTGTACTACTGCAGgagGCGGTGTCTAAAACCTAGGCAGCATCGCCGTAAAATGTACCTTTCATCCACTCTGGAAAGCTCAAAGAGAGACCAGGGGACATCCACTTCCCACTTAAATCTCATCAGTGGTGGACACATGGAAACAGCTTCCTCAGCTGCCGAGCATGACGGCATAAAATCTGACCTTTCCTCCAACCGTGATCTTCACAGCTCTAGAGAGGACTTTTTCAGGCATGGCCTCAACCAGAGACAGCGGAACTCCAGGATGAGCGTAGACACAAAGCGAGGAGTGCTTCCTTTAAAGACCACTCGCTCTTCAAACACAGGAACCCGTGACCCGCTCCTGCAGGATGACTATAGCAAAGGTTACAGCTCTGCGGAGGACTCTGATGAACGTAGATATCATCAACACAATGCTAAAGACAACCAGGGCTATTCATCAGACCCACCGTCTCCACCTCCACTTTTGCCACCATTTACTGGCCACTATAAGGATCACAGTCGGGATAGCAAGCCCCCAGAGTATTATGCATCAGCAGGGGATCACCTCAGTCGACCCAGTTCCGTTAACACCCAGCCTGGCCAGCTGATCTTCTGTCACTCCATGGAGCAGATGAAGGAGAGCATGTACCATAGCATGGTGCCCACGTTGGTCATCCCTGCTCATTATATGCATATGTCCTCTGACCTATCAGCTGTGGAACAGGCAATGGAAAGGCAGCAACAACTGCAGCATGATATGGAGGGCATCCAGGTTAGCATGACGCTGCCACGGCAACAAACTCAGCACCAAaagcaacaacagcagcagcaggccAGACAAGAAAATGAAGAGGAAGAGTCTAGCCAGAAAGCAGAGGGACCTTCAGAGGAGAACTGGGGATCTGAACAGTCCACTGCCCCAGTTCGTATTCCTGTCCTTTTCAATGACTCCACCATTGCGCAAATGAATGGAGAGCTGCAAGCAATGACAGAGAAGAAGCTTCTGGAGCTTGGAGTAAAGCCACACCCTCGTGCCTGGTTCGTTTCCCTTGACGGCCGTTCAAACTCTCTTGTTAGACACTCCTACATTGAGCTAAGCAATGAAGCCCTGCGTGCACCCGTGGGCCCCAGCAGTCTAGCACAGGACCACCGTTCTGAAGCACTCCCCATGAATTCAGCGAGATCTACTCACCGGAAAGTGAAAGAGGAGGGCAAAGCGAAGGAGGGAGGTGAAAGAAAAGCTCATGGAAAAATTTATTCCAAGCTTCCGGTTATCGAAACACCAGACTCGAGCAGCGAGAGCCATTCAGCCATCTACTCACCTGAGGAGAACTCCACGGCGCCACTGCTTGATGAGACCTCTGAATCCAGAGGAGGGACATTCCCTCGTAAAGGTCGCAGTCGGGACAACAGCACCCGAAGTAGTGCCAGCGAGGTCCACAGAGACTCTGTCACCAGTCCTGATGACGACAATGAAGCCGACGACAAGGATGATGATGGAGAGAATAAGAAGAGCCCCTGGCAAAAGCGTGAAGAGAGGCCCCTCATGGTGTTTAACGTCAAGTAACTCACATGCTGTCCAGGACTGGTTATGGCACCATCTTGGCTATACTTTAGATCAGTGGTCTCAAAATCAATTCCTTGAGGGCCAGAGCTCTGccgagtttagctccaacttacACCTGCTTGGATGTTTCTAATgttcctgaagaccttgattagctgggacaggtgtgtttgattatggCTGGAGCTAAACTGTACAGAGCTGTGATCCTCCAGGAACTGAATTTGAGACCAATGCCTTAGACGCTTACTAGTGATGAAGATGCAGCGCTGGAAAATAGTCAGATGACAATAGCACAATAAGCACAATAAGAGACATGGCACTTACCTGAGTGATACACATCTGTTCCAACCATTAAGACTAGGTACCAAGAATTAGTGCTGAATTCCGCTTGTAAAGAAGCATCTAAAGTCCTCACACCCTTTTAGATGGCCTTCAGATGGTTTAAAGATCTGTTGTAGTTCTGACAGCAGTTCATGAGGCCATAACTTTGAATCTGCACTCTTCTCAAGCAGTTTTCTCGCTTTCCTAAAGTGATACCCATTTTTGTAAGAATGACCATGAGCCATTTTAAACGGTAGACTTTGGGAAGCAATCCATAAGCCTTAAAGAGCTTTtccttttaaaagaaatataaatgaaaatgaacattaatgtGATATAGGTGAAAAAGAGAGCTTGAAAGATTTTATCGGTCTAGAATGACTTTTATTATAGTGGTTTactcaaatgtttaatttgtttatattactatatagaGCTGAAACATTAAGATGTGTGGGAATCTTACATTTCACAAACGGAAGTGAaatatttgctgaataaatttATGTGTTTACTCCAATGTGACTTATCAAATCCTAGTGGTTGACACATAATGACACTGTATTTTGTACTGTTGGTAAAAGTTCCCCTTTTGTACTTATCTAAAACCAGTGTTGCCgtttttaagtatgttttaaGGAGACTGTTTGGATTAGGAAAGCTGCTCTTAGATATGAATAAAAGGTTCTGCTTATATGCTCTACAGAACTCGTTTTGTACTCTGAATAAGCCTTTCCTGTTGGGTCAGTGCAGCAATAGGAATTGTGTTTTGAGGGACTTACCTTGGACACCTGTGATAATGTTTTCGCACTAATCTTTGCTGCAGTGCATCAGAACTTTAAATCAGAAACACTGCGACTCTGCTCTGTTAACTGTGGAAGTACAATTTTgaacctttttcttttatggactttttgtgtgtgattgAAGACAGATTGTGCTTGAAATGGATGTGCATGGAtgaatttacacaaaaatgttgtaccaagtattttttaaaaacaagtattGCTTGATTAAGCACTCTTACTAAACTCTGTGAACCACTTATTTGTAAATAACACCTTAGTAAATTTACACTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006249615.1 lncRNA upstream 24338 21290414 ~ 21291935 (+) False LOC122337857
TU32802 lncRNA upstream 24351 21290349 ~ 21291922 (+) True LOC122337857
TU32784 lncRNA upstream 46781 21263598 ~ 21269492 (+) False LOC122337912
XR_006249646.1 lncRNA upstream 47302 21253746 ~ 21268971 (+) True LOC122337912
TU32780 lncRNA upstream 56044 21255144 ~ 21260229 (+) False LOC122337912
TU32816 lncRNA downstream 15573 21345129 ~ 21493498 (+) True G22094
TU32803 lncRNA downstream 52252 21381808 ~ 21383124 (+) True G22084
TU32955 lncRNA downstream 306188 21635744 ~ 21636079 (+) True G22197
TU32956 lncRNA downstream 306567 21636123 ~ 21636570 (+) True G22198
TU32959 lncRNA downstream 404582 21734138 ~ 21734422 (+) True G22201
XM_043233801.1 mRNA upstream 69465 21244992 ~ 21246808 (+) True zwi
XM_043233790.1 mRNA upstream 258024 21030624 ~ 21058249 (+) True LOC122337590
XM_043233778.1 mRNA upstream 360289 20923497 ~ 20955984 (+) True LOC122337427
XM_043233782.1 mRNA upstream 527269 20784533 ~ 20789004 (+) True tmub2
XM_043233783.1 mRNA upstream 527269 20784549 ~ 20789004 (+) False tmub2
XM_043233794.1 mRNA downstream 772 21330328 ~ 21340480 (+) False LOC122337639
XM_043233793.1 mRNA downstream 775 21330331 ~ 21343248 (+) True LOC122337639
XM_043234697.1 mRNA downstream 24811 21354367 ~ 21363114 (+) True LOC122341347
XM_043233759.1 mRNA downstream 33883 21363439 ~ 21366154 (+) True LOC122337169
XM_043233803.1 mRNA downstream 59591 21389147 ~ 21403118 (+) True LOC122337825
unassigned_transcript_291 other upstream 1001942 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 1128190 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 1129075 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 1208437 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 1248272 20066130 ~ 20068001 (+) False LOC122341338
XR_006248723.1 other downstream 308187 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 645696 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 646953 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 1199433 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 1216602 22546158 ~ 22547208 (+) True G22329

Expression Profile