RNA id: XM_043234697.1


Basic Information

Item Value
RNA id XM_043234697.1
length 1577
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC122341347
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21354367 ~ 21363114 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAACGTGAGCGCGTGTATATGAAGTGGCTACAGGTGTTGATGGTTAGTTATCGGGTGACTGGGATCCTGACCATGTGACCGGCTCGTCTCGACAGCTGTCCCGCTCTGTCCGTCCAATTGACTTTCGCTTTCGCGTGAGAAACGCAACCTTTCAAATGGCGTCCCAAGAAGAAACGAAGATATCAACGAAAAGAAGCAGCATGAGTCCTCCTCCAAACTtgtctGAATTAAGGATTTGGTTGTTGGGAGAAGACTGTGCTGATAAGAGTTCAGTGGGAAACTTGCTCTTGGGAAGAAATGAATTTGGAAGAGAAGCTTCAGCTGAATCAGGCAGAGGACAGATTAAGGATCAAAGCATATCTGTGGTCATCACACCAAATCTGTTTAAAAGAGACGTTCCTTCAGATGCAATTACTCATGAACTAAAAAACTGTGAGGCCAAGTCTGCTCCAGGTCCACACGTACTTCTGCTAATTCTGCAACCAGAAATGTCCAAAGAGAAGGTGAACTATATGAGTAACACCATGAACTCCTGGTCAAAGCACACAATGAATCATACTCTGGTAGTGGTGATGGAGGGAGAGAAGAAAATCAGTACTTCTAAAGAGGAAAAacttcaacatttatttaaagaaaaatgccaCAAATTAAACGCATTATTGACAGATCAACACAGTTTAGTCACTGAACTATTTGACAAAATCATGAACTCGGTGAAGAAGAATGAATGGAATTATCTCATCTTTGAAATATATGAATCACCACCAGAGAtgccacaaaagaaaaaagccaTGGAGAAATTTGCAGGATTTTCATCAgactttaaacacaaaattgcATCAATTGTGCAAACATCGTCTCAGAGCacaagaaacaaagaaaGGCCTGTTCTCAATTTGGTGATGTTTGGAAGTAACAGAGCTCAGAAGACTTTAGCTGTGAACACAATACTGGGCCTCAGAGAGTCTGCAGAATTGTCTGAATCTGAAAGCCATCATAAATGTGTCAGGAGAGACGGTGTGATATGTGGACACAAGGTCACCCTGGTTGAGATGCCGAAGCTAAACAAAACATCTATTTCTCAGAAGGAAATGCTGCAAGAGTCTTACAATGCTCTGTCTTTATGTTCATTTAACATAAACGCATTTCTCCTGGTCCTCACTGTTGATTCTCTCACTGACGATGATAAAGGAGAATTTAAATTAATGAGTGAAATTTTCAACACAGCTGATGAGAAGTTCTGGAATTGTCTGATGATAATTTTCCTATATGAAGGGAACAGAGAGGACATGATTGCCAATGAATTCatacaagaaaacaaagacattcagACATTACTGAAGAAATGTGGGAACAAACATTACATACTCAGTGTTAAACAAAGACCTGATAGTGCACAGCTTTTAGAAATGCTTCATATGATTTATACAGTTACTTGTTACTCATTGGAAACATATCAGCAGGCTCAAATGGATGATAGACTTCAACTAAAggccaaaaataaacaattagaGGAAGAAATCAGAACGttgaaaatgattaatgaaAAGAAAGGTAACTCAGATGACAGAAAGTGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32753 lncRNA upstream 11098 21247604 ~ 21343269 (+) True G22046
XR_006249615.1 lncRNA upstream 62432 21290414 ~ 21291935 (+) False LOC122337857
TU32802 lncRNA upstream 62445 21290349 ~ 21291922 (+) True LOC122337857
TU32784 lncRNA upstream 84875 21263598 ~ 21269492 (+) False LOC122337912
XR_006249646.1 lncRNA upstream 85396 21253746 ~ 21268971 (+) True LOC122337912
TU32803 lncRNA downstream 18694 21381808 ~ 21383124 (+) True G22084
TU32955 lncRNA downstream 272630 21635744 ~ 21636079 (+) True G22197
TU32956 lncRNA downstream 273009 21636123 ~ 21636570 (+) True G22198
TU32959 lncRNA downstream 371024 21734138 ~ 21734422 (+) True G22201
TU33101 lncRNA downstream 614504 21977618 ~ 21979015 (+) False wnk4b
XM_043233793.1 mRNA upstream 11119 21330331 ~ 21343248 (+) True LOC122337639
XM_043233794.1 mRNA upstream 13887 21330328 ~ 21340480 (+) False LOC122337639
XM_043234696.1 mRNA upstream 24811 21316273 ~ 21329556 (+) True LOC122341346
XM_043233801.1 mRNA upstream 107559 21244992 ~ 21246808 (+) True zwi
XM_043233790.1 mRNA upstream 296118 21030624 ~ 21058249 (+) True LOC122337590
XM_043233759.1 mRNA downstream 325 21363439 ~ 21366154 (+) True LOC122337169
XM_043233803.1 mRNA downstream 26033 21389147 ~ 21403118 (+) True LOC122337825
XM_043234698.1 mRNA downstream 66568 21429682 ~ 21437955 (+) True LOC122341349
XM_043233991.1 mRNA downstream 78808 21441922 ~ 21444741 (+) True LOC122340007
XM_043234699.1 mRNA downstream 84057 21447171 ~ 21450709 (+) True LOC122341350
unassigned_transcript_291 other upstream 1040036 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 1166284 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 1167169 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 1246531 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 1286366 20066130 ~ 20068001 (+) False LOC122341338
XR_006248723.1 other downstream 274629 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 612138 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 613395 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 1165875 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 1183044 22546158 ~ 22547208 (+) True G22329

Expression Profile