Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043234728.1 |
| length | 2724 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 3 |
| gene id | LOC122341396 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056701.1 |
| NCBI id | CM032070.1 |
| chromosome length | 30200998 |
| location | 28711703 ~ 28714513 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0009063 | cellular amino acid catabolic process | biological_process |
| GO:0009078 | pyruvate family amino acid metabolic process | biological_process |
| GO:0009080 | pyruvate family amino acid catabolic process | biological_process |
| GO:1901605 | alpha-amino acid metabolic process | biological_process |
| GO:1901606 | alpha-amino acid catabolic process | biological_process |
| GO:0046395 | carboxylic acid catabolic process | biological_process |
| GO:0042851 | L-alanine metabolic process | biological_process |
| GO:0042853 | L-alanine catabolic process | biological_process |
| GO:0044282 | small molecule catabolic process | biological_process |
| GO:0006522 | alanine metabolic process | biological_process |
| GO:0006524 | alanine catabolic process | biological_process |
| GO:0016054 | organic acid catabolic process | biological_process |
| GO:0005811 | lipid droplet | cellular_component |
| id | description |
|---|---|
| ko04979 | Cholesterol metabolism |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU36004 | lncRNA | upstream | 6559 | 28704030 ~ 28705144 (+) | True | G24132 |
| XR_006248991.1 | lncRNA | upstream | 317165 | 28393741 ~ 28394538 (+) | True | LOC122335662 |
| TU35756 | lncRNA | upstream | 382292 | 28328465 ~ 28329411 (+) | True | G23964 |
| XR_006248988.1 | lncRNA | upstream | 391547 | 28319710 ~ 28320156 (+) | True | LOC122335640 |
| TU35738 | lncRNA | upstream | 476167 | 28227075 ~ 28235536 (+) | True | G23953 |
| XR_006248999.1 | lncRNA | downstream | 3519 | 28718032 ~ 28719109 (+) | True | LOC122335688 |
| TU36034 | lncRNA | downstream | 43182 | 28757695 ~ 28831744 (+) | True | G24146 |
| TU36039 | lncRNA | downstream | 87751 | 28802264 ~ 28802611 (+) | False | LOC122341400 |
| TU36060 | lncRNA | downstream | 140450 | 28854963 ~ 28855171 (+) | True | G24169 |
| TU36061 | lncRNA | downstream | 144372 | 28858885 ~ 28859136 (+) | True | G24170 |
| XM_043234727.1 | mRNA | upstream | 3095 | 28707031 ~ 28708608 (+) | True | LOC122341395 |
| XM_043233130.1 | mRNA | upstream | 53214 | 28653093 ~ 28658489 (+) | False | cacng5b |
| XM_043233148.1 | mRNA | upstream | 53214 | 28653095 ~ 28658489 (+) | False | cacng5b |
| XM_043233138.1 | mRNA | upstream | 53214 | 28654085 ~ 28658489 (+) | True | cacng5b |
| XM_043232770.1 | mRNA | upstream | 61053 | 28592815 ~ 28650650 (+) | False | LOC122334878 |
| XM_043234729.1 | mRNA | downstream | 6034 | 28720547 ~ 28721944 (+) | True | LOC122341397 |
| XM_043232830.1 | mRNA | downstream | 21486 | 28735999 ~ 28737619 (+) | True | LOC122335069 |
| XM_043233439.1 | mRNA | downstream | 71019 | 28785532 ~ 28789067 (+) | True | LOC122335596 |
| XM_043232811.1 | mRNA | downstream | 78539 | 28793052 ~ 28797759 (+) | False | LOC122335014 |
| XM_043232823.1 | mRNA | downstream | 78602 | 28793115 ~ 28797759 (+) | False | LOC122335014 |
| TU36019 | other | upstream | 3104 | 28707313 ~ 28708599 (+) | False | LOC122341395 |
| XR_006248835.1 | other | upstream | 64611 | 28592815 ~ 28647092 (+) | False | LOC122334878 |
| TU35969 | other | upstream | 151379 | 28515643 ~ 28560324 (+) | True | G24115 |
| TU35581 | other | upstream | 1429297 | 27281849 ~ 27282406 (+) | False | LOC122335546 |
| TU35317 | other | upstream | 1864346 | 26846723 ~ 26847357 (+) | True | G23695 |
| TU36055 | other | downstream | 129328 | 28843841 ~ 28846292 (+) | False | LOC122335482 |
| TU36269 | other | downstream | 514240 | 29228753 ~ 29230230 (+) | False | cenpx |
| TU36401 | other | downstream | 677405 | 29391918 ~ 29401266 (+) | False | LOC122335632 |
| TU36421 | other | downstream | 725436 | 29439949 ~ 29442655 (+) | False | LOC122335508 |
| TU36431 | other | downstream | 785010 | 29499523 ~ 29500119 (+) | True | G24436 |
