RNA id: XM_043234740.1


Basic Information

Item Value
RNA id XM_043234740.1
length 2865
RNA type mRNA
GC content 0.46
exon number 15
gene id kat7a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12279708 ~ 12287876 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGTGGAGAGTGTAAACAGACTACGCGCGCAGTCATGACCCGTGACTGTCAGTGATGAAGCAGTGTGTCCTTGTACCACACGAATGTTTCCCTCACGTCCACAGGGATGCATCACTTAAGCGGCCTTCGACAGCTTTCGGCGATCTAAGTGCGTTCAGAAATCCATCAGAGACCCAGCCCCGTGAATCGTCTGCAGCGGAGAAGCGCTATGCCGCGGCGGAAGAGGAACGCGGGCAGCAGCTCTGAAGGGACCGAGGATTCAGACTTCTCCGCTGAGCACACGGACAGCTCAGAGAGTGACGTCCACACGGCGAGAAACACGCGCCTCACTCGCTCCTCGCTGCGCCTCAGCCGCAACTCGCAGGATTCCAGTCCCGTGAGGAACCCGTCTGCTCCGGTTTCAGAGGAGGTGGTGAATTATTCCACCCGTCGGGTGACTCGTAGTCAGCAGCAGGGGGTGACGGTCCTGCCCAAGAAGTACCCCCTGCGGCAGAGTCGCTCTTCTGGCTCAGACACGGAGCAGCATGGGGAAATCTCAGAGAGGGACATTAAACAAAGTGCAGAGCATGACGAATCCCCAACCCGGACACCCACAGGCAACGCTCCTTCCTCTGAGTCTGACATCGACATGTCCAGCCCAAACGTGTCTCACGATGAGAGTCTGGCAAAGGAGCTGTCGCTGAAAGAATCCAGCCTTGCTCACCGGCCCAAACGACGACGCTTTCACGAGAGCTACAACTTTAACATGAAGTGCCCCACACCTGGTTGTAATTCACTTGGACATTTGACAGGGAAACACGAAAGGCACTTTTCAATATCTGGATGCCCACTGTACCATAACCTTTCAGCGGATGAGTGCAAGGTGAAGGCAAGCTCTCGAGACAAACACGTGGAGGAGAGGACACTCTCACAGCGGCAGGATGAGAATCGGCATTCTGCTCGGCAACAGGCCCAAACGGAGCGACAGCTGCGGTATAAAGAGAAGGTGACGGAGAtgaggagaaagagaaactCTGTTCCTCTTAAAGAGCAAAAAGACAAGTACACGgagcacAAGCAGACCCATGGTAGCAGTCGTGAGCCTCTGCTGGAGAACATCACAAGTGACTATGACCTGGAGCTGTTCAGAAAAGCCCAGGAAAAACTTCGGCTGCAGGGACAGGTCACAGAGGGCGGTAACATGATAAAGACCATTGTGTTCGGCCGCTACGAGCTGGACACCTGGTACCACTCGCCATACCCCGAAGAGTACGCCCGCCTCGGTCGCCTTTACATGTGCGAGTTCTGCCTCAAATACATGAAGAGTCAGACCATTCTGAGACGTCACATGGCCAAATGTGTGTGGAAACATCCACcaggtgatgagatttacagaaAAGGGGCTATATCCGTTTTTGAAGTGGACGGCAAGAAGAACAAGATTTATTGCCAAAACCTGTGCCTGCTTGCCAAACTCtttctggaccacaaaactttGTATTATGATGTAGAGCCGTTCCTCTTCTACGTGATGACTGAAGCTGACAATACCGGCTGCCATCTTGTAGGCTATTTCTCCAAGGAAAAGAATTCATTCCTGAACTACAATGTCTCCTGCATCCTGACCATGCCACAGTATATGAGGCAGGGTTATGGCAAGATGCTGATTGATTTCAGTTATTTATTGTCCAAAGTAGAGGAGAAGGTTGGCTCCCCTGAACGGCCTCTCTCTGACCTGGGACTCATCAGTTACAGGAGTTACTGGAAGGAAGTGCTCCTGCGCTACCTGCACAACTTCCAGGGCAAAGAGATCTCCATTAAAGAAATCAGTCAAGAAACAGCTGTCAATCCTGTAGACATTGTCAGCACTTTACAGTCACTGCAGATGCTGAAGTACTGGAAAGGGAAGCACCTGATCTTAAAAAGACAGGATCTGATTGATGATTGGAAAACCAAAGAGGCAAAACGTGGAAGCAACAAGACTATTGACCCTACGGCCTTGAAGTGGAGCCCACCCAAAGGAACCTAAGACAATAATCTGCATGCTCTTCACTGTTTGCTGTAGATTAGCAGGTCTTGGTCACTGTTAGAATAGCTCAACACATAGGAAAGTGTTACAATACTTTACAAGTAAGTCTGCAATCTTAACTGTTCTGAATGTGTCACATGGGTCATGTAAAACATTTCAAGTTACTATTATAATCTAGATTTTTGAAACATGGTTAACATTTCAACAAACATCGTAGAACTGCTGCGTAGGAGATCCTATCGCCTAGCCTAGTGTTTGATACTCAAATGGAAAttgttttactgttgtttttttaagtcatcTATTGCATCTCTTTATTTTAGAGAAATGACTGTTtgactgttaaatatttatgtggggaaaaaaacattacagtgttTCTTTTATCTAATGGTTTTGTGAGCTAACAagcttcttgtttttcttttctttctttttttgtttcaatttcCTTTAAACCAGATATGTGTTCCCAGCCCTATTTAACATTAGCCAGAGTCATTGCACTAagttaaaagaatattttattagctCAAGTGAGACTATCCTGTATTTTGGAACAGACACATTGCAGTAAATGTGATATATTAACCCttcatcaagttttttttttcttctaaagcCTACAATGGAAACTATTAAGTGGAAGCTTCACTTAGTTTATAGCATGTCTTGCAGCAACTGTAATTTGTGAGCAGCCggaatagttaaaaaaaaaaaaagctcatagAATTACCGTGATGCACTTGTAAACTCCACCTAGTGGATTTAACACAGATTATACTCTTATATGCCAGTAGCATGTGTTGCACTTGAGTTTCTGTCTCCTCTGAAATAAATTTGGTCACTGTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250458.1 lncRNA downstream 8772 12267862 ~ 12270936 (-) False LOC122341243
XR_006250459.1 lncRNA downstream 8774 12267862 ~ 12270934 (-) False LOC122341243
TU28999 lncRNA downstream 8815 12265845 ~ 12270893 (-) True LOC122341243
TU29054 lncRNA downstream 49329 12226575 ~ 12230379 (-) True G19518
TU29033 lncRNA downstream 97224 12182258 ~ 12182484 (-) True G19503
XR_006248508.1 lncRNA upstream 6268 12294140 ~ 12295423 (-) True LOC122332655
TU29090 lncRNA upstream 51830 12339702 ~ 12342331 (-) False LOC122342093
TU29186 lncRNA upstream 401748 12689620 ~ 12691332 (-) False cacna1aa
TU29337 lncRNA upstream 576438 12864310 ~ 12886954 (-) False G19677
TU29341 lncRNA upstream 576438 12864310 ~ 12886207 (-) False G19677
XM_043234746.1 mRNA downstream 279 12276835 ~ 12279429 (-) True zgc:113090
XM_043235472.1 mRNA downstream 23930 12251917 ~ 12255778 (-) True pheta2
XM_043235473.1 mRNA downstream 29778 12246754 ~ 12249930 (-) True mylpfa
XM_043235776.1 mRNA downstream 138942 12136718 ~ 12140766 (-) True si:ch73-248e21.5
XM_043233742.1 mRNA downstream 143495 12132596 ~ 12136213 (-) True si:ch73-248e21.7
XM_043234747.1 mRNA upstream 550 12288422 ~ 12290984 (-) True g6pc1b
XM_043234981.1 mRNA upstream 9182 12297054 ~ 12300573 (-) True aoc2
XM_043233704.1 mRNA upstream 27578 12315450 ~ 12320066 (-) True LOC122336412
XM_043233705.1 mRNA upstream 27578 12315450 ~ 12320021 (-) False LOC122336412
XM_043235875.1 mRNA upstream 34372 12322244 ~ 12332841 (-) False LOC122342092
XR_006250490.1 other downstream 358941 11913002 ~ 11920767 (-) False LOC122341756
TU28873 other downstream 416745 11853748 ~ 11862963 (-) True G19383
TU28829 other downstream 551733 11715722 ~ 11727975 (-) False limd2
TU29176 other upstream 334911 12622783 ~ 12679800 (-) True G19606
unassigned_transcript_278 other upstream 693215 12981087 ~ 12987204 (-) True LOC122331923
unassigned_transcript_279 other upstream 699478 12987350 ~ 12992329 (-) True LOC122331939
TU29331 other upstream 718124 13005996 ~ 13068190 (-) True G19676
TU29371 other upstream 759169 13047041 ~ 13047494 (-) True G19700

Expression Profile