RNA id: XM_043234776.1


Basic Information

Item Value
RNA id XM_043234776.1
length 1537
RNA type mRNA
GC content 0.42
exon number 2
gene id timm29
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13134670 ~ 13136750 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTATATctaagacaaaaacattttttctctttgtaaatAAAAGACCCTTTGTATCGttcttatttttagttgttgtaAGTACGTTTCTTTGGTAAAACAATTTATTGACCGTTATctaatagtttaatatatttgacaTCATATTCATGAATACATACGcgtttaatatttaagaatataagAAAATTTGCTTGCCGCATATCACATTCACCGATCTAAATATTtgatacaaataattacaaacctctctttttttgattaaaatagaaacgttaaaaacattgtttcctgtgtcatttcctgttttagtAACTTACTGTTTTAGTATGAATGCATGGTGGAACCGACAATTGAGTATTTTGTTTCCCCACCGGACTAATAACATTACACGTGCTGTGCTCTTCGCCATTTTAGCTCAGCAGTTTCACCAGCCTCCGCTGTAACGTTGAGCCGATGTTGGTAACTGTCGACCGGAAGCTCTTCCTGTCCTATATTCACCGTGAACTGTGAACTCTTACCGTTCGTGAGTTCATTTGTTAACATGGCCGCCTCGTGGCTGCTGAAGAGATGGTGCTCCACAGCAGCTACAGAGACAACCAAGGGCACAAGGTGGCAAAGACTGATAAAGAGTCGCGCAGGTGTATGGTGCCGAAGTCTTTTAACTGATTATAAGGAGGCTTGTCGTGAGACCGTGCTGGGGGCCCGAGAGCGACCCCTTAAAGCCACAGTCTACTTGGGTCTTCTGGGAGGAGTGTACGCCTGCTATTACACCAACCCTGATGATGCCTCCTTTGAGACCAGCCTTCTAGAAACTTCCAACCGCCTGGCTCTGCTGTCACCATGGATACGCAGTGGCACCTCAGATGGACACGTCCAGACCCTTGTGAAACTGCGAAACGAGGGCAGGCTGCGCTATGCCAGCCTGGGCATCGTATCTTTGACTTATTACACGGACTATGACCCCAAGTCCAGCCTGTATGAGGCACGGTGCTCGGCCATCTCTGTGCCCTGGGCAGAATTTCCAGAACGCGTCCTGGATGTGGGTTTTGCAGGACGCTGGTGGGTGCTTGATCGTAAAATGAAGGATTTTGATATAAATGAGGAGGAGTTCAAATATCTTCCACCTGCTTTAGTGGCAACGGTCCCACCGTCATCCCAGATAACGGAAAGGAACGAAAAGCTGCATGAGGAATCATGGAAAGCTGTGGTCATGGAAGACGAGAGCAATGAATTAGATGGTATACAAAAAGATCTGGACACACCCGTTAAAGAAATAGAGAGCAACACGTCATACAAAGTACAGACTTCAACATAGCTCAAATATAGAtgactctaaaaaaaaaaaaaaaaaacatgcttgcaATCAGCAGTCAGCTGTtgataagaaataaaaagtaaaaaaatatgtacagcaTTATTATATTGTGATCATGGAAATAAGCAACATGATAATGTAGTCtgttatttttactgaaaataaattgtgCGAATAAGTGTTATTGGTtgactgtaaatattaaaacctCTGTAGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29256 lncRNA upstream 20031 13112520 ~ 13114849 (+) False si:dkey-204f11.64
TU29201 lncRNA upstream 42240 13088254 ~ 13092640 (+) True G19626
TU29203 lncRNA upstream 52726 13077933 ~ 13082154 (+) True G19628
TU29199 lncRNA upstream 58186 13072133 ~ 13076694 (+) True G19624
TU29211 lncRNA upstream 62281 13061117 ~ 13072599 (+) True G19636
XR_006248092.1 lncRNA downstream 3532 13140282 ~ 13152319 (+) True LOC122330830
XR_006250467.1 lncRNA downstream 35289 13172039 ~ 13173224 (+) True LOC122341519
TU29398 lncRNA downstream 89809 13226559 ~ 13227185 (+) True G19722
TU29447 lncRNA downstream 207745 13344495 ~ 13351575 (+) True G19757
TU29446 lncRNA downstream 219466 13356216 ~ 13357051 (+) True G19756
XM_043234772.1 mRNA upstream 5272 13116031 ~ 13129608 (+) False carm1
XM_043234771.1 mRNA upstream 5272 13116033 ~ 13129608 (+) True carm1
XM_043234628.1 mRNA upstream 20024 13112477 ~ 13114856 (+) True si:dkey-204f11.64
XM_043234624.1 mRNA upstream 27033 13103276 ~ 13107847 (+) True aldh3b1
XM_043229415.1 mRNA upstream 160253 12972477 ~ 12974627 (+) True LOC122332118
XM_043229861.1 mRNA downstream 17757 13154507 ~ 13162307 (+) True slc25a23b
XM_043229869.1 mRNA downstream 17757 13154507 ~ 13162307 (+) False slc25a23b
XM_043235227.1 mRNA downstream 27246 13163996 ~ 13170254 (+) True znf207a
XM_043235228.1 mRNA downstream 27246 13163996 ~ 13170254 (+) False znf207a
XM_043235229.1 mRNA downstream 27246 13163996 ~ 13170254 (+) False znf207a
TU29192 other upstream 146967 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 246819 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 606077 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 621159 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 621159 12511926 ~ 12513721 (+) False G19326
TU29613 other downstream 561824 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 776873 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 912740 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 981717 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 1118740 14255490 ~ 14267791 (+) False abcc1

Expression Profile