RNA id: XM_043234802.1


Basic Information

Item Value
RNA id XM_043234802.1
length 4236
RNA type mRNA
GC content 0.48
exon number 21
gene id hgs
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6460745 ~ 6473566 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gacatttgcGTCATGTCGTCCGCGCATGCGCGTGTCACCCGGCAGTGAAACTCGCTTTTTTTCCACACAGGTGAACAACAGCAAAACAGACACCGAGCGTCAGAGATCAGAAATGGGCAAAGGCGGCGGAACATTTGAGAGACTGTTGGATAAGGCTACCAGTCAGCTGCTGCTGGAGACGGACTGGGAGTCTATTCTGCAGATATGTGACCTCATTCGGCAAGGCGATACCCAAGCAAAATATGCAATTGTTGCCAtcaagaaaaaactaaatgacaaaaatccACATGTTGCGCTTTATGCTCTTGAGGTCCTGGAGTCGGTGGTGAAGAACTGTGGCCAGACGGTTCATGATGAAGTGGCAAGTAAACAAACGATGGAAGAGCTGAAGGAGCTGTTCAAGAAACAACCCGAACCGAACGTGAAGAACAAGATCCTTTATCTGATCCAGGCCTGGGCCCACGCCTTCCGCAACGAGCCCAAGTACAAAGTCGTCCAGGACACCTATCAGATCATGAAGGTGGAAGGCCACGTCTTCCCAGAATTCAAGGAGAGTGATGCCATGTTTGCAGCGGAAAGGGCCCCTGATTGGGTGGATGCTGAGGAGTGTCACAGATGTAGGGTCCAGTTTGGTGTTATGACCCGAAAGCACCACTGCAGGGCATGTGGCCAGATTTTCTGCGGGAAGTGCTCTTCGAAGTACTCTACCATTCCCAAATTTGGCATTGAGAAGGAGGTGCGCGTGTGTGAGCCCTGCTTCGAGATTCTCAACAACcacccctccctctctccccctCCTAGGAAAGCCGAAGGGAAGGCCGCCAGCACTGGGCAGTCCGAGCTTCCCCCTGAGTACCTGACCAGCCCTCTGTCCCAGCAGTCTCAGGTAGTGCCCACCGAATCAATGCCTCCTAAGAGAGACGAGGCCGCGctgcaggaggaagaggagctgCAGCTGGCCATCGCGCTGTCTCAGAGTGAGGCAGAGGAGAAGGAGAGGATGagacagaaaaacacttaCTCTGCGTACCCCAAAGCCGATCCGACCCCTGTGACTTCCTCTGCTCCTCCTGTCAGCACTCTCTACTCCTCTCCCGTGAACTCATCAGCTCCATCGGCTGAAGACGTGGATCCAGAGctgGCCCGTTACCTAAACAGAACTTACTGGGAGAAGAAACAGGAAGAGGTTCGCAAGAGTCCCACCCCCTCCGCTCCTGCTCCGGTTTCACTGGCTGAGCCCGTGCCAATTAGCCAACCGGTAGAAAGCCACGCTCCAGTCCAGCCCATCAACATAGTGGAGCAGCAGTATCAGAATGGAGAATCTGAGGAGAATCACGAGCAGTTCCTGAAGGCCTTGCAGAACGCCGTCACCACCTTCCTTAACCGCATGAAGAGCAACCACATGCGCGGCCGCAGCATCACCAACGACAGcgctgttctctctctcttccagtcCATCAACAACATGCACCCGCAGTTGCTGGAAATACTCAACCAGCTAGATGAAAAGAGACTGTACTACGAGGGTCTTCAGGACAAACTGGCACAAGTGCGTGACGCGCGGGCGGCACTCAACGCTCTGAGAGAGGAGCACAGGGAGAAACTGAGACGGGCTGCCGAggaggcagagagacagagacaaataCAGCTCGCCCAGAAACTGGAGATCATGAGGCAGAAGAAACAGGAGTACCTGGAGATGCAAAGACAGCTCGCAATCCAGCGTCTGCAGGAGCAGGAGAAGGAGAGACAGATGCGTCTGGAGCAGCAGAAACACACCATTCAGATGAGAGCACAGATGCCTGCGTTCTCTCTGCCTTACGCCCAGATGCAGTCGCTGCCTCCTAACGTGGCAGGAGGGGTGGTGTATCCCCCCGCTGGCCCACCCAGCTATCCTGGCACGTTCAGTCCCGCTGGCTCAGTGGAGGGGTCGCCAATGCATGGGGTTTACATGAATCAGCCCGGACAGACGGGTGCCGGTGGCCCGTACCAGGCCATGCCTGTGTCAGCTACAGATCCCAACATGGTGAACGCTTACATGTATCAGACTGCAGGCACCAGTGGGCAGCCAGCCGCCCCGGGACAAGCCCCTCCCACAACCACCCCTGCCTACACTAACTACCAGCCCACACCTACACAGGGCTACCAGAACGTGGTCTCTCAAGCTCAGAGTTTGCCCCCGATGTCCCAGACTGCACCCACCAATGGTATTGCCTACATGGGCTACCAGCCGTACAACATGCAGAATATGATGACCGCTCTTCCAGGACAAGACCCCAACATGCCTCCCCAACAGCCCTACATGCCCGGGCAGCAGCCTATGTACCAGCAGATGGCTCCCCCCGGCGGTCCACAGCAGTCACAACAGCATCCGCCGCAGGCTCCTCCGGGCAGTGCAGAGGCTCAGCTCATTTCATTTGACTGATCATAGCTCATCACATGCCTTTACCCACCAGGTCCAGCACACTACATTCAACTCTCCCTTACCCTGCTGTTTCTGGGTTTATGGCCCTGCACCTGCTCTCGCTTCACTATGCTCCGCAGATACTGAAGGTGTACAAATATCGTGAAAGCATTTGAGTCCCCCTCCTCTCTCCGTTTCTTTAAATGAAGGAGGAGAGGCTACAAATGGAGCTGGTGGGGAACCTTTGTCTCTTAACTGGATGGATCTCATGAAACTCCGTGTCTAGATCATATTTTACccctaaacaataaaaaaaccttttctcacgcttataaaataaacttatcTTAGACCGTTGCATTGGTTTTGCATCATGATATCAGTTATGACCGTTAAACGATTACTTTCTCTGTTCTCGTTATTGTAAAGCAGAAAAATGGTATTTCGTTTAAATTGCGTAGTAGTTACATGGTAATATTTGTTGTACTGCCTTTTAATCCTGAtatcatgatttaaaaatgactgtataTCATTATTGTGATTCACCGTTGACaattataaatactaaaaaactCATTAAACATGAGAGTTTTGTTGGAAATATGATTTATGATGATGCAAGTATCTCAAtggacaaaattttttttttttgtgtgtgtgtggaaaagcCCATTTCTGCAAGATATGTGCGgtaaagttaaaatatattttcaaaattatacaaGCGATAACTGACAGTATTTCCGTTGTCTCAAGATTAAAAAGTTTTGTCGTAAGGCTTTCATATCTCAAATTTGAAATACTAAGGCATTATGACGGTTCTGCTTTGTCGTAATTGTGTTTTGATGTCAATTATGACaaagtaattatataaaagtCATGCTTCTTAAAGTCAAAATAATATAACCAAGTCATATATAAAAGTTTCACTAAAGCTTAGGTGGTAGAAATCAGattctataaaaaatatgttctaGACATGCGAGATTCATCCTCTAACTCTAACCGTAGTTTTTCCTTCTAAAACTAAACCGATGCGAAGTTAGTCATCGTACTATAGAGACACAAACACGATACGACATAACCATCTTTTGTGTCATATTTTTCTAAGATGTGTTTGCATGAGTGAATATGtaacagccttttttttttcctctctctcttcggGTGAGAGACTTGCCGTCTTCAGCGAGGCATCATAGCAGTTATTCAGCTCCGGTTTGCTGTAAGATCTAGAGATGTTGTGGAATCCTCGCTAATGATTTACGCGGTGGACGGCGCGAACGCCTTGTATAATTAACAGCCAGTGAGGTGTCAACTTTAACGCCGTTTGCATATATCGCCGATCTGTTTCGAAAGGAATAGGCTGGCGTTTCCAGATACTGCGTGTAGGTCAGCCAGACGTCGCGTGTGTTTGTGGGGTTCGGACCTAGAACTAGACCAGTCGTTCGATCTCAAAGCCGCGGTTTCATTACCAATTAATTACACTGAAACACTGAGCACCGGATCAATGACGGGCAGAGGAAGTCTATTTTTAGACAGCAGTTGTAAAAACTGTCGACGGCCTATGGGATGGTTTTGATGGATGAGGGGAACGCTGCATGcttgtaacacacacacacacacacacacacacacaactgaacTGGTGACATCTGTAACCCCTTTAATATCATCTTTATTCCATACTGATCCGCCTCAtgttaaaaagtcattttaagatCATATTTAATAAGTATCTTGTTCTTTTATCGGTCATACATtagtggaaatgtttttttttttttttcttgtctctgAAAGTATGtgcacaataaaacaatgtcaatctg

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016197 endosomal transport biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0016310 phosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K12182 HGS, HRS, VPS27; hepatocyte growth factor-regulated tyrosine kinase substrate

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26226 lncRNA upstream 23777 6436732 ~ 6436968 (+) True G17560
TU26186 lncRNA upstream 42382 6417662 ~ 6418363 (+) True G17524
TU26190 lncRNA upstream 106920 6346536 ~ 6353825 (+) True G17528
TU26183 lncRNA upstream 144124 6316268 ~ 6316621 (+) True G17521
TU26066 lncRNA upstream 193049 6267397 ~ 6267696 (+) True G17449
TU26258 lncRNA downstream 1533 6475099 ~ 6475619 (+) True G17584
TU26329 lncRNA downstream 150122 6623688 ~ 6625296 (+) True G17630
TU26379 lncRNA downstream 230848 6704414 ~ 6704702 (+) True G17662
TU26380 lncRNA downstream 231629 6705195 ~ 6705405 (+) True G17663
TU26412 lncRNA downstream 373372 6846938 ~ 6847606 (+) True G17683
XM_043234856.1 mRNA upstream 1764 6455039 ~ 6458981 (+) True cldnk
XM_043234825.1 mRNA upstream 5047 6449895 ~ 6455698 (+) True btr02
XM_043234826.1 mRNA upstream 5047 6449903 ~ 6455698 (+) False btr02
XM_043234838.1 mRNA upstream 10982 6445949 ~ 6449763 (+) True si:dkey-120c6.5
XM_043234839.1 mRNA upstream 15958 6442857 ~ 6444787 (+) True LOC122341451
XM_043234858.1 mRNA downstream 3143 6476709 ~ 6480102 (+) True mrpl12
XM_043234862.1 mRNA downstream 8586 6482152 ~ 6489059 (+) True slc25a10a
XM_043234814.1 mRNA downstream 45770 6519336 ~ 6570690 (+) False gcgra
XM_043234816.1 mRNA downstream 45771 6519337 ~ 6570690 (+) False gcgra
XM_043234813.1 mRNA downstream 45772 6519338 ~ 6570690 (+) True gcgra
TU26034 other upstream 265723 6192740 ~ 6195022 (+) False LOC122341437
TU26037 other upstream 265723 6192740 ~ 6195022 (+) False LOC122341437
TU26040 other upstream 265723 6192740 ~ 6195022 (+) False LOC122341437
TU26041 other upstream 265723 6192740 ~ 6195022 (+) False LOC122341437
TU25994 other upstream 361593 6098201 ~ 6099152 (+) False fbxw9
TU26266 other downstream 31349 6504915 ~ 6556750 (+) False G17590
TU26270 other downstream 31349 6504915 ~ 6556750 (+) True G17590
XR_006250506.1 other downstream 1182466 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 1476195 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 1476238 7949804 ~ 7950310 (+) False LOC122331768

Expression Profile