RNA id: XM_043234816.1


Basic Information

Item Value
RNA id XM_043234816.1
length 4370
RNA type mRNA
GC content 0.44
exon number 13
gene id gcgra
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6519336 ~ 6570690 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCAGGCTGATGATGCAGGCGCGCGCTGAGGCGGCTTCACTTTGAGCGCTTCATTGTGCGCGTGAGCCGAAACTCGTGAGTGTCCCTCGCCGCGGACCGGTCACGAAGAACCCGAAGCGCACGCTGAGAGCCGCAGAAGGATTCGTCTCGCATCAGTCCATCCGGGATTGGATTACGCGTTAAAATCCCCACCCCTCCCACCCACCCCAGCGCTGGGATTCAGTTCCGTTCCCCCGAAGATGCCCGTTTGCGGATCGCCGATCAGGGACTTTCGCGGAATTAAACGAGCAAAAGGCTGTGTGGTGATAGCTGAAGCCTTCCTATGAGGTGAGCGTATCGGTGCGGACCCCCGGCTCCCCTCGCAgcgacagcagcagcagcaggactAAGGGATGTCACAAGTATTCCTCCTTCTGACCCTGCTCAGTTCCTCCTCCTGCATCCAGGTGTCATCTGCTGCATCCCTCAAAACTTTGATGGCAAGATGGATGATGTACAGAGAGGAATGTTTTCGAAATATTAGCAGAGAACCACCGATGTCAGtccaACATGGCTTCGTGTATCTGGAGTGTGATGCAGAAGGACAGTATAGCAAACAGAAAAATGCCAGCGAATGTCAATCACATGACCCCACGCAAATCAACATGCAACACTACGGACGGATCCTCAGTCAGTTCTGGACCATGTACACCATCGGATATTCCCTGTCTCTCGCGGCTCTGGTGCTGGCGTTGGGCATCCTGGTGGCCTTTAGGAAGCTGCACTGCATGAGAAACAACATCCACATGAACTTGTTTGCCTCCTTCATCCTGCGAGCCTCTTCTATTCTCATCAAAGACGCCATGTTGGAAAGGCCTGATGACTTCCATGTTGGTCAGGACATCACCACTGAACTGGAGGTGGAGTGGCTGGTTAAAAACGAGACGGCGGTCGGCTGCAGGGTTGCAATGGTGATGATGCAGTACAGCATTCTGGCCAACAACTACTGGCTGCTGGTGGAGGGCATCTACCTGCACAGCCTTCTGGTCGTCACAGTCCTGACGGAGAGGAATTACTACGGCATCTACCAGTGTATCGGCTGGGGTGCCCCTCTGATATTTGTGTTGCCGTGGGTGATCGTGAAGTACCTGTACGAGAATGAAGAATGCTGGTTGCAGAATATTAACATGAAGTACTGGTGGATTATTCGTTCACCAATCCTGCTGGCCGTGTTGATTAACTTTTTCATCTTCATACACATCATCAAGATCCTCGTGTCGAAACTGAGGGCACACCAAATGAGATATTCCGACTACAAGTTCCGGCTTGCTAAGTCAACCCTCACCCTGATTCCGTTACTGGGGATCCATTCAGTCCTGTTTTCGTTTGTTACTGATGAGTCTACCTCACATGGTGCTCTGTCTCTGCGCCTCACAAAGCTATTCATCGACCTCTTCTTCAACTCCTTCCAGggGCTGTTGGTAGCCATCTTATATTGCTTTGTCAACAAGGAGGTTCAGTCTGAGATTCTGAAAAAATGGAGACGTTGGAAGCTTGGGCGGGACATAGAGGAGGAGTACCGTCACACCTACAGCCAGTCCCTTCAGATGAAGAGTGGCAGCATCATGGTCCCTCCTAACAACCTCTCGCGGCTGCCTGATATCGCTACCACTACTTCACGGCTCGGCAGTCCGGAAGAGAAGCAGATGTTGGTGTCCAACAGTCAGAACGGTATAGGTACTGGATTGCAGTTCACTTCCACACCACAAGATAGTTCCACCTGCAGTTCGATAACAGAGGACATAGTGATGGTGGACAGAGTAAAGGTTTGTAACGTTCAACAGGACAATGTCTAGAGCAACCTGGGAGCTCCAGATGTCTCGCAGAAGAAGACCTTTAACCCAACCACCCTCGCTTCTTCTGGCTGAGGGCCCTGAAGCAAGGAGCAGGAGacgtgtgaatgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgagtttgtgagaGCACTGTCCTCTCTGATGGACACATGATGGACACCCCGTTCATCACATTACATGGTGCTCAGTTGGCACTGTCCCAGTCAGACAGGATCAGCGGTGAGCAGAAGTTGGACACATGTTAGGAAAGATTTGCACAAATGTACATGCTAACAAACTCAGTGATGAAGAACAGAGTCTTACCTCTAGTCTTATATAGCTGTCTGTGATGTTGACAATTTAGTAGAGAAAATCCATTGGGACTGCAAGGTTCAAGAGGAGCCATCGCAAGCAAACATCTACAACCAGCACCTCTAGATGAATAGAAGATTAAGAAAGAGATAGACTTGAACTTGTCAAAAAGTTAACTAAACCGGGTAATGCATTCCAGAGTGCATGAGCTACATTTGAACCGAAGGAACCCCATATGTCCCTGTAGAAAAGACCAACTTGGACCTGAATTTCCATACAGGTTTATGCTAATATGGTGCCGATGGACCAGCAAAGCCAAAAATGGGTGAAGCTGATTGATCAAGGACATTCTGCTGGTTAAATAAGCAAGGATACCTTGTGGTGACACCAACACACcagcatttttgtttgcatatgttTTGGAATCGATTAACGCTTTTGGGTACATGTAACACGTAAAGATGTTTTTGTGTAGTTTCATTAAAACCATCTTTGTCTTTGTTAGAAATTAATTGCTAAGCTAAAGTATAGACATAGAGTGATAAAGTATTGACAGGTATTGCCCGTGTGCCTTTTTCTATAGGTCATAGAAcccattattaaaacaaaaacagaaagtgaAGTGCAAATCAGGCACCCAATCTTCAGAGGTAAAAGTTACTTAAAGCAGATTCTGTATAGCAAACAGGACTTCAGCATTAGATGAATGTGCCACTATTAATCATATGATTTGCTCCCTTCAAGGAAATATGCTTGGTATACTCAAGCATGCAAAATACAGCCATATGTGAATTGCTTCAAAGGGTCTGGGTCAATGCCTTAATGGAGTAGCATGACAGATCTGATTCCCCTGTGTCAATGGTCAGAGGAGATGACTGTCCACAAGACATGTTGATATGTTCAGTATTAGTTAGCAACTGCTTCTTCTCTCACGTACTTCTTATCTCCCAATAGACGTTCAAATCCTTTGCCATAGAGCTTTGAAAGATGCTCAGGAAGTGTAGGAGGAACTGTGGAGACGGGAGCCAGAAAGCAAAGAGAAAATTtagaacaaattaaaacataagaCATCGATCAAAATGGTTCCTCAGTCAGAGGATGTTTGTCATGCTCAGTTCAAATTATGATATgctattaagaaaaaaaaaaaaacatacgcAACCGCAAGACATTGCGACGAAGTGTAGAGGTGAAGTTTGtaattttaacaacattagtgCCACCAAATCTAATTGTTTGAGGTGCCCAGCTGAGCCATAACAATAAAGAGTTTGAGGTGGGACTTTTTCTTTGAACATAAGGGTTAAAGTTTGTCTGGTTAATATTAGCAGTTAATCCCTGCTGGTATTTACTGACTACACCATTACAGTGGCATCTTTTCTTTACTGATGACCTTACATGTCAAACAACTGCATTTAAGTTGAATACGAATgcttacacatttatatttctcAGTTATTGAAATTAACTTGGCCTGGACATTTGGAGCACTGAGagtttgttataaaaaataaatttgtacaATTCTGTTTAGTGTCACTAATGATGTATAAATGACTTACTTCACCTTCAATGACAATGAGCAGCTGATGCCCCATATTGTGGCATTTGTGTGCATTATgatgcacatttatattttctttagaTCATCATTAAACACATGATGATAATGACAATGATTTTAGCTGATAACTATGTGGGGCAATTTgcacaattttaatttataattgttaaatatgtaGATACTGGTAAATGCCTGTTGAGATTTGTAATGACTTTGTTTTGTGATGTCTGTTATTTGTGCACATGGTGTGTATTTTGTGCTTGTGCGTGCTTCGTGGAGAGTGAGAGAAACCTTTAGGTCCTGGTTTAGTGTTCAGGTAACTAAACAGAGAAATTACTGGCATTTTTGACCAATTTTGCCTTTTGAGTGAGAGATATAATTTGGTCCTTCTTTGGGTGAGATGGTAGTGGCtaatttataataactgcagATGAAAGACTCTTTAGTGCTTACAAAGTGCTAAACATTGGACTTTTTCCAAAAAGGGAAATTCTTTATCGCCACAAGGGATCAAAGACCATGAACTTATTTGTCTGAGGTTGTctgccaaaacaaaacatcctgTTGAATATTTCAAACTGATTTTCCAAAACTGGCATCGTGTAATGTTATCCAAGCATAACAGTAATCGTGGAAGTCAATAAATCATGCATACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26258 lncRNA upstream 43718 6475099 ~ 6475619 (+) True G17584
TU26226 lncRNA upstream 82369 6436732 ~ 6436968 (+) True G17560
TU26186 lncRNA upstream 100974 6417662 ~ 6418363 (+) True G17524
TU26190 lncRNA upstream 165512 6346536 ~ 6353825 (+) True G17528
TU26183 lncRNA upstream 202716 6316268 ~ 6316621 (+) True G17521
TU26329 lncRNA downstream 52998 6623688 ~ 6625296 (+) True G17630
TU26379 lncRNA downstream 133724 6704414 ~ 6704702 (+) True G17662
TU26380 lncRNA downstream 134505 6705195 ~ 6705405 (+) True G17663
TU26412 lncRNA downstream 276248 6846938 ~ 6847606 (+) True G17683
TU26442 lncRNA downstream 332056 6902746 ~ 6903161 (+) True G17699
XM_043234862.1 mRNA upstream 30278 6482152 ~ 6489059 (+) True slc25a10a
XM_043234858.1 mRNA upstream 39235 6476709 ~ 6480102 (+) True mrpl12
XM_043234806.1 mRNA upstream 45771 6460745 ~ 6473566 (+) False hgs
XM_043235678.1 mRNA downstream 13814 6584504 ~ 6599082 (+) True LOC122341958
XM_043235679.1 mRNA downstream 24295 6594985 ~ 6599082 (+) False LOC122341958
XM_043234876.1 mRNA downstream 35998 6606688 ~ 6607669 (+) True LOC122341485
XM_043234875.1 mRNA downstream 43834 6614524 ~ 6618353 (+) True tubb4bl
XM_043235364.1 mRNA downstream 55677 6626367 ~ 6630437 (+) True asf1ba
TU26034 other upstream 324315 6192740 ~ 6195022 (+) False LOC122341437
TU26037 other upstream 324315 6192740 ~ 6195022 (+) False LOC122341437
TU26040 other upstream 324315 6192740 ~ 6195022 (+) False LOC122341437
TU26041 other upstream 324315 6192740 ~ 6195022 (+) False LOC122341437
TU25994 other upstream 420185 6098201 ~ 6099152 (+) False fbxw9
XR_006250506.1 other downstream 1085342 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 1379071 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 1379114 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 1380164 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 1389381 7960071 ~ 7962295 (+) False LOC122341279

Expression Profile