RNA id: XM_043234849.1


Basic Information

Item Value
RNA id XM_043234849.1
length 1015
RNA type mRNA
GC content 0.45
exon number 6
gene id ccdc137
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6299826 ~ 6303823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGCGCTGCCGAGCCGCTGATCTCCGCAGCGTAGAAGAAGACAAGCAGGCGAAACACGCCGTACGAGTTTACTGTCAACTGGGGGGGAAAACTATCTacttaaacaatgaaaacatcaaaacagcTGAAACAGAAGATGAACGAGAAACATTCCAGTAAAAAGAAGTTAAAGAAAAATGATGACCCTGCATCAGATGATCACCTCCAGCAGATTCCCCGTCGATTGCGTGAAATCATGGAGAGTATGAAAGAGGGTCCccaaaagaggaaaagagCCTTTAAGCCGAAGGTGGACTCGGGAGATATTCCTATCCCACACTTCGGCCGAGGGCGACGGGAGACGGAGAAGCATTATGTGCAGCGCATGAATAACGAGAGCATGCACGTCCTCTTCCTCACGAACAACCAGGTGGATCGACAGCCGGAGGTCGAGCTTAAGAAAGAGACTGAGCAGAATAAATCTGTCAAGAAAAATAGaCTCCATAAAGGCAAACTTCTGCAGCAGAAAAAGAAGCTAAACCAGCAAGAGGATCGTGTGGAGGAGGAGATGTTTAAAGATGAGGTACCGTTTGGAGAAGTTGCCATGGCGCCTCCATCACTGAGTGTTAAACCAAGGAAAGCCATAGATAAACCCCAGGGGGCTACCAAAGGTCTTCTACTGAACTCCCTCCTGGGTCACAGTCCTGTGTCGGTCGGAAAACCCTCAATGGCGAGGAAGAGGATAATGGAGGAAGAGCGTGAGAGAGTGGTGCAACTGTACAGACAGATGAAGCAGAAGCAGAGAGACAAACACGAGCAGGACAAGGCTGCCAAGACCTCCACATGATGCTCTGCTCTCtgtattatatagtattatattatatctcaatgtataattcatttttctgtacatttttgctACCTCTGCTGGTCGACAATACAAGTGAttgattttatgattaaatattaacaagTGGATGTAGCAGGACTGtgtaaaaggcaaaaaaataaatgttcacacTTTTATATAATGCA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0051129 negative regulation of cellular component organization biological_process
GO:0051983 regulation of chromosome segregation biological_process
GO:0051985 negative regulation of chromosome segregation biological_process
GO:0010639 negative regulation of organelle organization biological_process
GO:2001251 negative regulation of chromosome organization biological_process
GO:0000075 cell cycle checkpoint biological_process
GO:1905818 regulation of chromosome separation biological_process
GO:1905819 negative regulation of chromosome separation biological_process
GO:1902099 regulation of metaphase/anaphase transition of cell cycle biological_process
GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle biological_process
GO:0031577 spindle checkpoint biological_process
GO:0010965 regulation of mitotic sister chromatid separation biological_process
GO:0044770 cell cycle phase transition biological_process
GO:0051783 regulation of nuclear division biological_process
GO:0051784 negative regulation of nuclear division biological_process
GO:0044784 metaphase/anaphase transition of cell cycle biological_process
GO:0045839 negative regulation of mitotic nuclear division biological_process
GO:0045841 negative regulation of mitotic metaphase/anaphase transition biological_process
GO:2000816 negative regulation of mitotic sister chromatid separation biological_process
GO:0007049 cell cycle biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0071173 spindle assembly checkpoint biological_process
GO:0071174 mitotic spindle checkpoint biological_process
GO:0051304 chromosome separation biological_process
GO:0051306 mitotic sister chromatid separation biological_process
GO:0007088 regulation of mitotic nuclear division biological_process
GO:0007091 metaphase/anaphase transition of mitotic cell cycle biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process
GO:0007094 mitotic spindle assembly checkpoint biological_process
GO:0009987 cellular process biological_process
GO:0033045 regulation of sister chromatid segregation biological_process
GO:0033046 negative regulation of sister chromatid segregation biological_process
GO:0033047 regulation of mitotic sister chromatid segregation biological_process
GO:0033048 negative regulation of mitotic sister chromatid segregation biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0006259 DNA metabolic process biological_process
GO:0030071 regulation of mitotic metaphase/anaphase transition biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0098687 chromosomal region cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005694 chromosome cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26066 lncRNA upstream 32130 6267397 ~ 6267696 (+) True G17449
TU25997 lncRNA upstream 183734 6115704 ~ 6116092 (+) True G17414
TU25995 lncRNA upstream 186220 6113206 ~ 6113606 (+) True G17412
TU25990 lncRNA upstream 336938 5960536 ~ 5962888 (+) True LOC122341474
TU25984 lncRNA upstream 352118 5945293 ~ 5947708 (+) True G17405
TU26183 lncRNA downstream 12445 6316268 ~ 6316621 (+) True G17521
TU26190 lncRNA downstream 42713 6346536 ~ 6353825 (+) True G17528
TU26186 lncRNA downstream 113839 6417662 ~ 6418363 (+) True G17524
TU26226 lncRNA downstream 132909 6436732 ~ 6436968 (+) True G17560
TU26258 lncRNA downstream 171276 6475099 ~ 6475619 (+) True G17584
XM_043234852.1 mRNA upstream 6432 6275898 ~ 6293394 (+) False pdgfab
XM_043234850.1 mRNA upstream 6432 6275901 ~ 6293394 (+) True pdgfab
XM_043234851.1 mRNA upstream 6432 6275903 ~ 6293394 (+) False pdgfab
XM_043234853.1 mRNA upstream 6432 6276469 ~ 6293394 (+) False pdgfab
XM_043234830.1 mRNA upstream 34499 6212591 ~ 6265327 (+) True prkar1b
XM_043234811.1 mRNA downstream 875 6304698 ~ 6308852 (+) True btbd17b
XM_043231787.1 mRNA downstream 25051 6328874 ~ 6339401 (+) True LOC122333921
XM_043234839.1 mRNA downstream 139034 6442857 ~ 6444787 (+) True LOC122341451
XM_043234838.1 mRNA downstream 142126 6445949 ~ 6449763 (+) True si:dkey-120c6.5
XM_043234825.1 mRNA downstream 146072 6449895 ~ 6455698 (+) True btr02
TU26034 other upstream 104804 6192740 ~ 6195022 (+) False LOC122341437
TU26037 other upstream 104804 6192740 ~ 6195022 (+) False LOC122341437
TU26040 other upstream 104804 6192740 ~ 6195022 (+) False LOC122341437
TU26041 other upstream 104804 6192740 ~ 6195022 (+) False LOC122341437
TU25994 other upstream 200674 6098201 ~ 6099152 (+) False fbxw9
TU26266 other downstream 201092 6504915 ~ 6556750 (+) False G17590
TU26270 other downstream 201092 6504915 ~ 6556750 (+) True G17590
XR_006250506.1 other downstream 1352209 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 1645938 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 1645981 7949804 ~ 7950310 (+) False LOC122331768

Expression Profile