RNA id: XM_043234852.1


Basic Information

Item Value
RNA id XM_043234852.1
length 2342
RNA type mRNA
GC content 0.44
exon number 6
gene id pdgfab
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6275898 ~ 6293394 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATATATTCCGCAGATCAGACGTGCATGAGACAGCATTCAGTGCACGAACTCTAGAGAACAAGACCAACTCTGAGCTCTTCCCTTCTGCTTTATTCATGGATACTAACCTGGGATTGTACTTTCACTGCGTGACGGCAAACTCCTCCTCGAAGACCCGGTGCTGAATTTCTCTCTGAGGCGCACGGACTCATTTCTAAGCTCTTGCGAAGCTATTTCTCTTTGAGCTTTAATCTATATACACCGACCCAGGCGATGCAAAAGGGTTTCTGTCTTGGGATTGTTCAGGCTTGGACAGCCATGACGACCTTTTGCGAGTCGAATCACTTTTGAGATTGAGTGCAGGGCGCGTTTGGACCAGCACCAGCACCTGGAGCACCAGGGCAGTTTGGATTCTCCTCCGTAGACTTGAGCTGGCGCTTCGGGTCATTTAAAGGGAGATCTCTTCAAGGTATGGTTCTGGACTCTCTGCGCTCAGGAGCGGTCCCGAGGCTCCTACAGTCTGCGTCTTTCTTATTAGGTGGGAAATTGACATCGGAAGGAGATGAGAACCTTATTCTGCTGCTTTCTGCTCCTCACCTCGCAACTTCTGCTGGCAACCGCTGAGAAGGAGTTCGCAATCCCTCAAGACTTCATCGACAGGCTGTCTCACAGCGAAATCAACAGCATCAGCGACCTCCAGCGGCTACTGGAGGTAAATTCTCCAGTAGAGGAAGCAGTGCCAGCCATGTGCAAGACACGGACAGTGATCTACGAGATCCCGCGCAGTCAAGTGGATCCCACCGCTGCAAACTTCCTAATATGGCCTCCGTGTGTGGAGGTGAAACGCTGTACAGGCTGCTGCAACACCGGCAACATGCGCTGTCACCCCTCCAAAAAACAGCACCGTACTGTCAAGGTGGCAAAGGTAGAGTTTGCATCGCGCAAGAAAGCAAAATTGAAGGAGGTGCTTGTCCGGTTAGAGGATCATGTGGAGTGCGTGTGCACGTCACAGCATCATGTGATTGAGCATGCGGAAGCAGACACAGGCCCACGCACagttaaaaaaggtaaaaagcgGAAACACAGAAAGCAAGCAGTGGCTGTACAGATCAACAAGGATATTCAATAAAAGGCAAACATTTCCTAATACTCAGCGGACCAAAATATCCTGCAGTGGACATGAGGTGAAACCACATAAAACGAGCGATTGAAGGACAACAGTGGCTACGTAACGCTCCAGCAGCACTGGgactttgacctctgaccctacTGACCCcattgctgttaaaaaaaaaaaagatactgtaTCCAGAGGAAcattatacacaaacacaacaccaAAGGTGCTTTCTACGTACTCTGTCAAACACTGAAGACAAACAAGATTGGTATTCAGTTAATTATTAAGTGGTCAAACACTGGGCGGAAACGAAACTGAAAAGGACGATGTTTGTGTCGATTCTCTGTTGTTTATGTATATGACTCTCGTAAAGGTCAAAGATGAGGAGAAAGTCTTTTGGAGAACACTAAGTTTGTAGAGACCATGAACTTCACATGCTTGTGTTTGGATCCGCTCAAGCAGGACTCTAGATGCCCGTGAAGGGTGGACTAACTAATGGACTCCAGTCGTTTAAAAAGAGGATGAACATATTAAAGGATGTGCTGTCATATAACCTTGCTAACTGCCTTAGTCCTCTTGGGTCCAGAACATTGAAACTGCTCTTTCCAATGTGCCTCTAGAAAGCTTTGTCCTTCCGAAGAGAACTGCCTGTCCGTGAACAAAGACGTACGGAAGGCAGTGTAATGCAGTCATTATGCCAGAATAAAGTATTTATGTATGCGATCTCTTTCTCACACTTTTCGTTTCTCAGTCCAATGTAAGAAGAGCTCATCTTCATTGATCTGGAAGTATTATTAGTGATATTTTCTCAACATTTCAATTCATTCTTGCTTATATCTTACAGCAGAAATACTAGGTTTTTGTCCTGGAAATGTGTGTCATAGGAAGACATGTAAGAGACAGCTGTCgaaagatgctttatttttgttaaaaaatatatttataatgctaaTGTAGAATCAAGCAGGaagtatgtttatgtattgtgTTTTCTGTTATTGTGGTGTAATGGTTGTATGATGGGATAAGATCAAACATTGAGAGTAAATGCTATACAGTATCAACAGGTTGGCCATGACACAAGCATCATTAGTCATCAGTTGTTGGTTCATAATTTGCTTCTTTGCTCAATGAACAATATTTAATGCTAACATACAAATAGAGAAAAAGATAATTCAAATAGTCAATAAACAATTACCTTAGGTATGAAGCTTTGTTATAAATAAAGATATCAAAACTAA

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0043406 positive regulation of MAP kinase activity biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0048008 platelet-derived growth factor receptor signaling pathway biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0031954 positive regulation of protein autophosphorylation biological_process
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0005615 extracellular space cellular_component
GO:0005161 platelet-derived growth factor receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26066 lncRNA upstream 8202 6267397 ~ 6267696 (+) True G17449
TU25997 lncRNA upstream 159806 6115704 ~ 6116092 (+) True G17414
TU25995 lncRNA upstream 162292 6113206 ~ 6113606 (+) True G17412
TU25990 lncRNA upstream 313010 5960536 ~ 5962888 (+) True LOC122341474
TU25984 lncRNA upstream 328190 5945293 ~ 5947708 (+) True G17405
TU26183 lncRNA downstream 22874 6316268 ~ 6316621 (+) True G17521
TU26190 lncRNA downstream 53142 6346536 ~ 6353825 (+) True G17528
TU26186 lncRNA downstream 124268 6417662 ~ 6418363 (+) True G17524
TU26226 lncRNA downstream 143338 6436732 ~ 6436968 (+) True G17560
TU26258 lncRNA downstream 181705 6475099 ~ 6475619 (+) True G17584
XM_043234830.1 mRNA upstream 10571 6212591 ~ 6265327 (+) True prkar1b
XM_043234829.1 mRNA upstream 10571 6212591 ~ 6265327 (+) False prkar1b
XM_043234831.1 mRNA upstream 10571 6212591 ~ 6265327 (+) False prkar1b
XM_043234832.1 mRNA upstream 10571 6218321 ~ 6265327 (+) False prkar1b
XM_043234810.1 mRNA upstream 80860 6186808 ~ 6195038 (+) True LOC122341437
XM_043234849.1 mRNA downstream 6432 6299826 ~ 6303823 (+) True ccdc137
XM_043234811.1 mRNA downstream 11304 6304698 ~ 6308852 (+) True btbd17b
XM_043231787.1 mRNA downstream 35480 6328874 ~ 6339401 (+) True LOC122333921
XM_043234839.1 mRNA downstream 149463 6442857 ~ 6444787 (+) True LOC122341451
XM_043234838.1 mRNA downstream 152555 6445949 ~ 6449763 (+) True si:dkey-120c6.5
TU26034 other upstream 80876 6192740 ~ 6195022 (+) False LOC122341437
TU26037 other upstream 80876 6192740 ~ 6195022 (+) False LOC122341437
TU26040 other upstream 80876 6192740 ~ 6195022 (+) False LOC122341437
TU26041 other upstream 80876 6192740 ~ 6195022 (+) False LOC122341437
TU25994 other upstream 176746 6098201 ~ 6099152 (+) False fbxw9
TU26266 other downstream 211521 6504915 ~ 6556750 (+) False G17590
TU26270 other downstream 211521 6504915 ~ 6556750 (+) True G17590
XR_006250506.1 other downstream 1362638 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 1656367 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 1656410 7949804 ~ 7950310 (+) False LOC122331768

Expression Profile