RNA id: XM_043234875.1


Basic Information

Item Value
RNA id XM_043234875.1
length 1753
RNA type mRNA
GC content 0.58
exon number 4
gene id tubb4bl
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6614524 ~ 6618353 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCGACAGAGACGGGCAGAAACGAGCAGCTCCTCCGTCAGCGCGCGGCAGAAGACAGCCCTCGGTTCCTGCGTCCCCGCCATCGTCCTTCCTGCGGCACCATGCGCGAGATTGTGCACCTGCAAGCCGGCCAGTGCGGCAACCAGATCGGGgccaagtTCTGGGAAGTTATCAGCGATGAACACGGCATCGATCCAACCGGAACATATCATGGAGACAGCGACCTGCAGCTAGACAGGATCAGTGTTTACTACAATGAAGCgacagGTGGGAAGTATGTTCCCCGTGCCATCTTGGTGGATCTGGAGCCTGGCACAATGGATTCAGTTCGTTCTGGACCCTTCGGACAGATATTTAGACCTGACAACTTTGTGTTTGGTCAGAGCGGAGCTGGAAACAACTGGGCCAAAGGTCACTACACAGAAGGAGCGGAGCTGGTGGACTCGGTACTGGATGTTGTTCGTAAGGAAGCAGAAAGCTGCGATTGCCTGCAAGGCTTCCAGCTCACCCACTCTCTCGGCGGAGGCACCGGCTCAGGCATGGGCACCCTCCTCATCAGCAAGATCCGCGAGGAGTATCCCGACCGCATCATGAACACCTTCAGCGTGGTGCCCTCGCCCAAAGTCTCCGACACCGTGGTGGAGCCGTACAACGCCACGCTATCCGTCCACCAGCTGGTGGAGAACACCGACGAGACCTACTGCATCGACAACGAGGCCCTCTACGACATCTGCTTCCGCACGCTCAAGCTCACCACGCCGACTTACGGAGACCTCAACCACCTCGTCTCGGCCACCATGAGCGGAGTCACCACCTGCCTGCGCTTCCCCGGCCAGCTCAACGCCGACCTGCGCAAACTGGCCGTCAACATGGTGCCCTTCCCCCGTCTGCACTTCTTCATGCCCGGCTTCGCTCCCCTCACCAGCCGGGGCAGCCAGCAGTACCGCTCGCTCTCCGTCCCAGAGCTCACCCAGCAGATGTTTGACGCCAAGAACATGATGGCCGCCTGCGACCCGCGTCACGGGCGCTACCTGACGGTGGCCGCCGTCTTCCGCGGACGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTGAACGTCCAGaacaagaacagcagctacTTCGTCGAGTGGATCCCCAACAACGTCAAGACAGCCGTCTGCGACATCCCGCCCCGCGGCCTCAAGATGGCCGCCACCTTCATCGGCAACAGCACCGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCACCGCTATGTTCAGGCGCAAGGCTTTCCTGCATTGGTACACCGGCGAGGGCATGGACGAGATGGAGTTCACTGAGGCCGAGAGCAACATGAACGACCTGGTGTCCGAGTACCAGCAGTACCAAGACGCCACCGCCGAAGAGGGCGAGTTCGAAGAGGAGGGCGAGGAGGAGGTCGCTTAAATCGCAACCACCCGGCGAAATAGTGTCCCTGCCACTCCATCCCATGTATTTCATCTTTCTCGCCACAAACCGATGCTCTCCAGAACAATGAATGGGTTTTCGCATTCAGTGTCCATCAATGACAGCAACCCTGACCCACCCACCAGTGACATTTTGAGGAATTGTGAACTTTTGGTTCggttttgtgtttctgaatgTTGTCAATGCACGCCATCAGCTCCCCCTCACATCCACGTTTAACTGTGAAGCCTTCAGATTCGAGAACGATGTAACTGGTGTCAGTGTCAATCTGAATAAAGGCTACTACTACATCTGAA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26258 lncRNA upstream 138905 6475099 ~ 6475619 (+) True G17584
TU26226 lncRNA upstream 177556 6436732 ~ 6436968 (+) True G17560
TU26186 lncRNA upstream 196161 6417662 ~ 6418363 (+) True G17524
TU26190 lncRNA upstream 260699 6346536 ~ 6353825 (+) True G17528
TU26183 lncRNA upstream 297903 6316268 ~ 6316621 (+) True G17521
TU26329 lncRNA downstream 5335 6623688 ~ 6625296 (+) True G17630
TU26379 lncRNA downstream 86061 6704414 ~ 6704702 (+) True G17662
TU26380 lncRNA downstream 86842 6705195 ~ 6705405 (+) True G17663
TU26412 lncRNA downstream 228585 6846938 ~ 6847606 (+) True G17683
TU26442 lncRNA downstream 284393 6902746 ~ 6903161 (+) True G17699
XM_043234876.1 mRNA upstream 6855 6606688 ~ 6607669 (+) True LOC122341485
XM_043235678.1 mRNA upstream 15442 6584504 ~ 6599082 (+) True LOC122341958
XM_043235679.1 mRNA upstream 15442 6594985 ~ 6599082 (+) False LOC122341958
XM_043234816.1 mRNA upstream 43834 6519337 ~ 6570690 (+) False gcgra
XM_043235364.1 mRNA downstream 8014 6626367 ~ 6630437 (+) True asf1ba
XM_043235358.1 mRNA downstream 12644 6630997 ~ 6646901 (+) True prkacaa
XM_043235357.1 mRNA downstream 17607 6635960 ~ 6646901 (+) False prkacaa
XM_043235356.1 mRNA downstream 19842 6638195 ~ 6646901 (+) False prkacaa
XM_043235360.1 mRNA downstream 31320 6649673 ~ 6656616 (+) True samd1a
TU26266 other upstream 57774 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 57774 6504915 ~ 6556750 (+) True G17590
TU26037 other upstream 419502 6192740 ~ 6195022 (+) False LOC122341437
XR_006250506.1 other downstream 1037679 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 1331408 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 1331451 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 1332501 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 1341718 7960071 ~ 7962295 (+) False LOC122341279

Expression Profile