RNA id: XM_043234887.1


Basic Information

Item Value
RNA id XM_043234887.1
length 2186
RNA type mRNA
GC content 0.48
exon number 18
gene id prkcsh
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9909976 ~ 9917069 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGAATTAATGTTGTACAATGGATTATTTTAGATGTCTTTGACTAATTTTTTACAAGCGCACATATAGTTTGCGTGGTGTTTATTGAAACATAGCACCTGCTATCTTGACGCTGTACTGTTTATCTCTTCTGCTCGGTCACCCGCCTCTAGTGGGAGTTCGCGTTTGTCCCTGCGTTTCCTGAGGCATCATGACCTGCCTGCACCTGCTGTTAACATTGGCCTTTGCTGTCAGTTTGGGGACACCTGTGGAGATTCAGCGACCACGAGGAGTGCCACTGACAAAGAAACCGTTTTATGAGGAGAACAAGCCTTTCACCTGTCTCGATGGATCCCGGACCATTCCTTTTGACCGAGTGAATGATGACTACTGTGACTGCAAGGATGGTTCAGATGAGCCAGGCACCGCTGCTTGTCCAAATGGCAGCTTCCATTGCACCAATGCTGGTTACCGGCCCATGTTTATCCCATCCTCCCGTATTAATGACGGCATCTGTGACTGCTGCGATACTACTGATGAGTACAACAGCGGagccaaatgtgaaaataccTGCAAGGAATTGGGACGTAAAGAGCGGGAAGTTTTGCAAAAGATGGCTGAGATCACCAAAGAGGGATTTCTCCTGAAACAGCAGCTCATTGAGGAAGCCAAGAAAGGACGACAAGAAAAGCAGGGTACGGTTACCAACATGCAGGAAAATAAGAAACAGCTCGAGGAGAAAGTTGAAGCGCTTAGGACGGTGAAAGAAACAGCAGAGCAGCCTGAGAAGGAAGCTAAAGAGCGCCACCTCAAGGCCTGGGAAGAGCAAAAGGCAGCTATTCACTTGGAGAAGGACAAAGCCAAAATGGCAGAAGCCTTTTTGGAGCTGGATGACAATGCAGATGGCTTTGTGTCTGTTTCTGAGCTTCAGTCTCACGCTGAATTGGATCCAGATGCTGATGGCACACTTACTGAAACTGAGATCCAGGGACTGATGGGAGGAGCTGAGCAGGTGGACACGGCAACATTTGAGAGTGTTTGGACCAACATTAAAGACAAGTACCACTCAGAGTCCCAGCCCGAGGAACCTGCCCCAGTGGAAACGCCTCCAGATGAAGTCAAGGAACCAGTGGTAGACAATGAATCCGAGCCGTACCCAGAAGATGACATCTCTGAGGAAGAGGACGAGGACgacgatgatgaagatgattATCACGAAGAAGATGAAAAGGCTCCGCCCACCGTTAAGACCCCCGAGAAGAGTCATGAAGATGAGGAAGCCATGCCGCCCTATGATTCAGACACTCAGACCCTCATCGACGCCGCTCAGAAGGCCAGAGATGATTTTGAGGAGGCTGAAAAAGCTCTTCGGGAGATGGACGATCAAATCAGAAATATTGAAAAAGAGCTGTCTTTTGATTTCGGCCCTCATGCTGAGTTCACTTACCTGTACAGCCAGTGCTACGAACTCGCCACTAGCGAGTACATCTACAGACTCTGTCCTTTCAACCGGGTTTCACAGAAGCCCAAGTACGGGGGCTCAGAGACCAACCTTGGGACGTGGGGAAGCTGGTCAGGGCCTGAAAATAATAAGTACTTGGTGATGAAATACGAGCACGGCACCGGGTGCTGGCAAGGTCCAAACAGATCAACTACAGTGAAGCTGACTTGTGGGAAGGAGACTGTGGTGACCTCGACATCGGAGCCGAGTCGCTGTGAATACCTGATGGAATTCACCACTCCTGCGGTGTGCCAAGAGCCGGCCGGCGCTGACCCCTCGCCACACGTGCACCCGGAGCTCTAGACTCCACGCTCTCCGCCCGTCGACGCATGGTTGTTGCTCTGTGGGAACATTAGCTTCATTTCCTGTTCAGGCTGTTTAAGAACCTCTTCCATTAGTTTTGAATCGGCTAAATGAGGCTGGAAGTTGGGAGAGCATGACATTCGGTaaactgtaatgttttgttgttgtttttactggGGGGGGGGGATCTGATCTCTTCACATTCCATAGATAAATTTGGGAATAAAATGTGACTTGTTCAAAAAAGGCCTTAGTTAATTTCACACTATTAATCTTTTGCACTGTGTACTCTTATTTTCACACATTACAGTCGGATAGCCCTTTTCCGTTTGGGTACATAAGAAAAATTGTGGCAGTTGAGCACTgttgaaataaattcatattaaaatgtatatttcaaaaa

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0006491 N-glycan processing biological_process
GO:0016310 phosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K08288 PRKCSH; protein kinase C substrate 80K-H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27812 lncRNA downstream 1359 9901531 ~ 9908617 (-) True G18638
TU27806 lncRNA downstream 116791 9789616 ~ 9793185 (-) True G18634
TU27798 lncRNA downstream 123852 9785249 ~ 9786124 (-) False G18628
TU27859 lncRNA upstream 76858 9993833 ~ 10039939 (-) False rbfox1
TU27935 lncRNA upstream 484858 10401833 ~ 10402211 (-) True G18717
TU27965 lncRNA upstream 657192 10574167 ~ 10579140 (-) True G18745
TU27991 lncRNA upstream 760482 10677457 ~ 10678580 (-) True G18771
TU28025 lncRNA upstream 772189 10689164 ~ 10697539 (-) True G18795
XM_043233842.1 mRNA downstream 31399 9833670 ~ 9878577 (-) False LOC122338283
XM_043233843.1 mRNA downstream 31399 9833670 ~ 9878577 (-) False LOC122338283
XM_043233841.1 mRNA downstream 31399 9833670 ~ 9878577 (-) False LOC122338283
XM_043233839.1 mRNA downstream 31399 9833670 ~ 9878577 (-) True LOC122338283
XM_043233934.1 mRNA downstream 84171 9811193 ~ 9825805 (-) False kank2
XM_043235242.1 mRNA upstream 24310 9941285 ~ 9963128 (-) True abat
XM_043235244.1 mRNA upstream 47476 9964451 ~ 9974561 (-) False mettl22
XM_043235246.1 mRNA upstream 47476 9964451 ~ 9974554 (-) False mettl22
XM_043235245.1 mRNA upstream 47476 9964451 ~ 9974543 (-) False mettl22
XM_043235243.1 mRNA upstream 47476 9964451 ~ 9974299 (-) True mettl22
TU27537 other downstream 447071 9426572 ~ 9462905 (-) True G18433
TU27085 other downstream 1511148 8309552 ~ 8398828 (-) True fmc1
TU27088 other downstream 1598627 8309552 ~ 8311349 (-) False fmc1
XR_006250544.1 other downstream 1690921 8218902 ~ 8219055 (-) True LOC122342198
TU27061 other downstream 1700883 8207764 ~ 8209093 (-) False LOC122339740
XR_006250486.1 other upstream 477339 10394314 ~ 10396341 (-) True eef2kmt
XR_006250541.1 other upstream 862126 10779101 ~ 10779235 (-) True LOC122342195
XR_006250542.1 other upstream 863127 10780102 ~ 10780196 (-) True LOC122342196
XR_006248663.1 other upstream 1094961 11011936 ~ 11064583 (-) False lrrc4ba
XR_006250462.1 other upstream 1777297 11694272 ~ 11714719 (-) False map3k3

Expression Profile