RNA id: XM_043234892.1


Basic Information

Item Value
RNA id XM_043234892.1
length 6297
RNA type mRNA
GC content 0.42
exon number 7
gene id elavl3
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9892533 ~ 9908575 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAAGAACATTGCAGCAGAGGCACAGAAGGAGCCTGCGAGGAGCTgggaaatacacacacaacagcAGAACCACAACACCCTCCCCTGGACACACCCTACTGGGGATCactgcttctctttttttctgaaccATCGCCCACGCCACACGGAGAGAAATCTCTCTCTCATCATCATCCTGAAGAAAACCCCCTTCTCCTCATTTTCACACTGCTGAGGAAACCTACAATCGCACGGGCTGAGCTTCCCTGCCGAAGACTGtcgtttttcctttttctttttttttcttttcgtttgGAACCTGACATTTGCCTTCCTCGAGCCACGCCACGGCGTAACATCTGCAAGACGGCCTGAAGACCTGCGACTTGAAGGACCTAGATCGCTATCATCTTTGTGCATCAAGAATGGTTACTATAATTAGCACCATGGAAACTCAGGTGTCCAATGGTCCGAGCGGAACCAGCCTGCCTAACGGCCCTGTCATTAGCACTAACGGTGCCACGGACGACAGCAAAACCAACCTGATCGTCAACTACCTGCCTCAGAACATGACCCAGGAGGAGTTCAAGAGCCTTTTCGGCAGTATCGGAGAAATCGAGTCCTGCAAATTAGTCAGAGACAAGATCACAGGCCAGAGTTTGGGCTACGGCTTCGTAAACTACGTGGATCCCAATGATGCCGACAAGGCCATCAACACACTCAACGGTCTCAAACTGCAGACCAAAACAATCAAGgtGTCCTATGCCAGACCAAGCTCGGCTTCCATACGCGATGCCAACCTGTACGTGAGCGGCCTGCCCAAAACAATGAGTCAGAAAGACATGGAGCAGTTGTTTTCCCAGTATGGAAGAATCATCACCTCACGCATCCTGGTAGACCAGGTCACAGGTATATCGCGCGGAGTAGGATTCATTCGGTTCGACAAAAGAAATGAGGCAGAGGAAGCCATCAAAGGCCTGAACGGACAAAAGCCGCTGGGCGCCGCAGAGCCCATCACCGTGAAGTTCGCCAACAACCCCAGTCAGAAGACGGGACAGGCCCTGCTCACCCAGCTTTACCAGACAGCTGCTCGCCGCTTCACCGGCCCTCTGCACCACCAGACTCAGCGTTTCAGACTCGACAATTTACTAAACGCCAGCTACGGAGTCAAGAGATTCTCCCCCATAACCATTGACAGCATGACCAGTCTAGCCGGCGTCAACCTGACCGGACCCACCGGAGCCGGCTGGTGCATCTTTGTCTACAACCTGTCCCCAGAAGCCGATGAAAGCGTCCTGTGGCAGCTCTTTGGGCCGTTTGGCGCCGTCACAAACGTCAAGGTCATCCGTGACTTCACCACCAACAAATGTAAGGGCTTTGGCTTTGTCACCATGACCAACTACGACGAGGCGGCCATGGCTATCGCCAGCCTGAACGGCTACCGCCTGGGCGACCGCGTGCTGCAGGTCTCCTTCAAGACCAGCAAGCAACACAAGGCCTGAAGGAAGGCCTAGTCACTACTGCTCTTTAACATGCAGGGGGAGCTACTGAGCTCCCTGTACATTCACTCTACATGGGCCTGGACTGAgtctctctctaacacacattctacacacacacatacacacacacacacacacacacacgtttagtTGTTtcgaacaaaaatacacaagtagagtcgtttttcttttctctttacaCAACATGCTAGTCCTTCCCAACATTTGCCTGTATTGAATTAGCAGAGTTGTGAGGCGGTGCTGGGGAAATCCACGAGGAGGGACAGTCTAATGAATGTGACAGAGAATGTCTGcagagatttaatttaattcaggcAAAGTAAGAGAACTGGTCAATGAacgacgaaaaaaaaaaaaagaaaagttaatcGAATATGTGCAATTTACCCGAAATCTTGCCCCGGTAACTCTCCCTTCTGGCTTCAGAGGATGTAGTCACTTTTTTACACTTGGGCATTTTGAATCAGTGattttttagagaaaaatgattaaaacagtgttctcttatatatattatgatataactatatatattcaACATTTAAGGTGGTTATAATAGCCAAATATGTAAGCATTTTCTAGAACTTTGATTACGGTTTCCTGGCTCTACATTAGGTTGCAACCTTGCCTTATGGCACCACACACACCTTACTCGAGGTCCAAACCAACAGCCACTGAACAAACTGTGGATGGTAGTCACAAATCGAGAGGTCACCCGGGGGTCATCACAATCACCTCAGCACACCGAAAGACAACGTTCATCACATGAGACACtcgtgcgcgcacacacacacacacacacacacacagacgcacatgCACACGCGCACCTCCGTCGGAGGGCGTAGCGAAACATCACAAAACATGGCAACCAAGAATCTCCTCGTACCTTTCCACTCTGAGTTGTAGAGTTAGAATTTAGAATCGATTCCACCACATGCAGTTGTCTGTGTAACTAGGGGCATTTCGACAGTGTTCCCATGGCGATGGCATTTGGAATTCTTTTGAAAGTCTTTCAAACCAATTATGAAGGCCGACTGCGGAATCCAGAACCAtattagatcattttaaaacaagtttgaaTGGCTCGGGAGTAGGAAAGGCCGTTTTGCCAGCTCTTTGAGAAAATCTGAGCTGTTATGAAGGTCAGGGGACACTGGGATCGGTCGCCCTTGGCCTTCATAAATTCTCAGATACATTTAGCTCCATTCACTAAACAGAATCGCGTTATAATTCGCTTTCCCGAACTGGTTTTAGCAGCCCCAGCATATCTAAACAGCTACATATCAAATCAAAATGTCCTCAAGGCCCTTTAAAGCGAGTCGCAGCCACACAaaaatttatctttttaaaataaataaataaatactcataTCATAACTGAAAAAATCCCTAGATACGTTAAAGACAATGCCCAAGCTGTCCACAGTCCTGCGATAAAACAAACGAAACTGTTCCATGGGGAGAGACATTGCTGTAAAATCGCAAAACTTCACATTATTACGAAGAAAAGAACTGAAAgatgtaaatgtgtgttcaaATCAAGTGACATTTTGCTTTTCTAAATAACGCTGTGTTAGCCAAAGAGGACAATGATCTCTTTGAAAGGATTACATTAgagattaatatatttttatatctacgaagaaaaaacacaagacCTTGTgcaacatttttacagattCTTAAATCGTGGAAATCTTTGGACACACCGCATGGCTTTATTTTCAGAGTTTTCAACTTTGGGGAGAGAGAGCCAGTCTGCGGTGTAAGGGAGGGGATCGGAGGGTTGGGGACTAAGACTTACATGCAGTGAAaccatttcattttcaaaaatacaaaaaaaaaaagagaaacatacgaaacgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaatcagcaGACAGGTACATGTATGCATTacgcaggaaaaaaaaaacaaaacaactttacGGTTTCTCTAAAGTGTTGAAAAGAATCAAGCGTTGCTTCAATGACGGTGCAGTGAAGCTCGAAATGGCGTCGCATCGAACACCCAGAGCATCTCATCTTGTATCGGCAGAAACGAACGAGAAGAAATCACCATAACGCTTCAGCATGTTTggtgcaccaaaaaaaaaaagttggaaatTGACTTAACGTAATGTAGCTGCACTTATCGATGTAATCAGTTCTCACACAATAATCCATAGTGAATTATATTCGCCAGTATGTCAACGCAACAAGCAAAATGTCTATCATTGTGCTGTCTAGATTTGttcgtttttaatttaatttccgCTCCGCATATCTTATGTATTCCACCTTCATATCGTCGACACCTAATTTTGCTCCTTTGCACAAGCACTAACCAACCAAGGGATCTTTAGCTTTGTCACTGATGAAGGGAAAAAAGTCAGTCCGAAACATTTAGAGCGTGAACgcacacacatctacacacacacacacacacacacacacacacacacacacacacatatcaaaGTGTCTCTAGGCCCTCCACAGCATTCCCATTGTATCAAAAAACTGTGATACACCTTGAACTAACCCCCCTCAGCTTTCGCCACATTAACATCGCAATGCATTTTCTTTCGCTAACGCTAACGCTAACGCAACTCATCCCGGAACTCATCGGTGGTGTGCCCTAGAGGGGACAAAAACCTTAGACGTAAAGATTGGTCCGCCCTCTAAAACGAGCAATGGGGTACACATAGCGACCGAGGCAACCCTGCAGTGCACCCGGTGACCATAGGGAGGTTTTAGCGTCGTCCCTCGGAGCCGAGTGTCCCAACGAACCCTTTAGCTACACCGCTCCCCATCCCCTCAGAGAGCCAAGGACAATGGCAGGAAACAAACATACTGCACCGCTTGAGCaactacaataataatcattaaaaaaaaaagacaaaaaaaactttcctaTGGAACAGTAAGTGCAATGTGCTTCGTTTTTATATTGACTGAGaacaaaagatatatatattttttaaaaaagaaattaaacgtCACACTGAAATGGTTTGCAGAATAGTGAAAGGATCAAATGTAacgaacaacaacaaaatggaaaaaaaaaaaaaaaaagtgttaactAACAGATTCATTAGAAGAATCAAACAAGCACCAAGAGCTCTGGTCTCTAAAAACGTCCATTATCCCTTCCTCCACCCCCTTAATAGTGCTCTGACCATGCAAGCTAAAACAAACAGCCGTCTATGGTACCGAAAAGAGCAAATCTAAAAGACCGTGAATGGAATACTGTCTAAAATATCATCGGTTTTAGCCCATGTTGATTTCAGAGTATCATTTTTCCtgtaatttattgatttactttACATATCAGAATCACACGTTAACTTAGCGTATTTGTGTTGTTGATGTTGCCATAGAGGACACACGTGGGTCGAATATTTCGTTTTGGTTCCTTTTATTGGGTACGGTTTCTTATATTTGTTTccattatttataattagttGCTGTTCTTACAGTGTATGcaggttttagaattagttagaattatttcttttcaatcaaaatgtgtttaattgtgtttgtAAAAGTCTGTGGTAGCTTTTGTTGcaacataaataatttaaactgaaaaaaaaaaaaatcaatatagcGCCAATGAACTTGTATTATTTGGGCGACTTTAAGCTTGTAGTTTTAACTTATTGTTaacttaaaaactatttattatcattattatgattattattattattgcctcgtatgaaagtatgttttgtgtatatttatggtttatttcattatatttgcAAGTTTAAATACTTTTCATTTTGCCAAAATGTGGTTACACCTTTTTCGTTTTTCTTTAAAGGGaacaaatagatttaaaaaaaaaaaaaaaaaacaaaacagaaaaaaaaactgctttagaATTACAATTTGGAAAAGTTCTCCATAGGCAAAGAATGCACTGCTATATTAAACTAATTGAAGTGTATAAACATACATGCTGTGTGCTAGATGTTATGCCTTTAATGcctgtgttttgtttgtcttgttaaatgaaaaccttttgattatttaatctAATCACAGTCTTGTTTTTCCAACCACGTTCAGAACCCCATAGCGAGTCAGGGCCCGGGGCGAGGCCTGGGGCCGGGGGGGGGCGGGCCGAGGCGGTGGTCCGGTCTACAGTTCGGACCCGCAGCCAGGCCTTAGGCTCAGCGTCCCTCGCCAAAAACCTCTCACCCGCTGCCTTACAGCCGCCAAACCAGACCGAGAGAGCTctctagaaaataaaaagagtcaGTGGGAGGGCTCGAGAGCAACGATTAGCAGACGTGGGCGAAGAAAGCGCAGCGGGGGAGACGGGGCCAGGCGAGGCGCTGAGATAGATAAAGGGGTCAGTGGTCACTCTGTTTCTCAACCAGTTGTATTTTGTGTCAGTTAATTTAGGAGGGACACAGAGTTACTTAGCAACGTTCTTCTGAAACCATTTTCCAGGAATAACAGAACaataacagaacaaaacaaacgaACAATAACGAGAATAAtacgaataataataaaaaaaaagatcaaaagcaGAACTCCTGATCTCAGTGTCTGTGTGTCACGAAAGAAAAATCTCATACTTccaaacatgaacaaacaaagacaaacacataaaggggaaaaaaataaataaacctttcagTTTAGTTTAGGATATTTATTACTGGGATTTCAGCTGAAGACGCTTGAGGACTTTTTCATggaattgtttaattatttgtactttacatgccagaaaaaataaaagatatgaaTCTCA

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27627 lncRNA upstream 33362 9854603 ~ 9859173 (+) True G18507
TU27622 lncRNA upstream 108077 9775320 ~ 9784458 (+) True G18502
TU27582 lncRNA upstream 289471 9602642 ~ 9603064 (+) True G18470
TU27568 lncRNA upstream 316633 9575241 ~ 9575902 (+) False G18458
TU27567 lncRNA upstream 316841 9575241 ~ 9575694 (+) False G18458
TU27691 lncRNA downstream 2382 9910957 ~ 9911612 (+) True G18549
TU27728 lncRNA downstream 125566 10034141 ~ 10103461 (+) False G18574
TU27867 lncRNA downstream 365399 10273974 ~ 10302050 (+) True G18671
TU27964 lncRNA downstream 663244 10571819 ~ 10579144 (+) True G18744
TU27967 lncRNA downstream 680947 10589522 ~ 10589819 (+) True G18747
XM_043233844.1 mRNA upstream 29317 9860538 ~ 9863218 (+) True angptl8
XM_043233845.1 mRNA upstream 29995 9860463 ~ 9862540 (+) False angptl8
XM_043230173.1 mRNA upstream 88149 9803573 ~ 9804386 (+) True LOC122332778
XM_043229722.1 mRNA upstream 92739 9799062 ~ 9799796 (+) False hbbe1.3
XM_043228772.1 mRNA upstream 96003 9795789 ~ 9796532 (+) True LOC122331228
XM_043235248.1 mRNA downstream 12000 9920575 ~ 9927011 (+) False nat15
XM_043235247.1 mRNA downstream 12001 9920576 ~ 9927011 (+) False nat15
XM_043235249.1 mRNA downstream 12229 9920804 ~ 9927011 (+) True nat15
XM_043235251.1 mRNA downstream 18537 9927112 ~ 9941228 (+) True carhsp1
XM_043235480.1 mRNA downstream 66797 9975372 ~ 9982638 (+) True LOC122341833
TU27625 other upstream 92780 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 142655 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 195976 9694632 ~ 9696559 (+) False aanat2
TU27323 other upstream 706875 9184528 ~ 9185660 (+) False LOC122341719
TU27725 other downstream 117243 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 844184 10752759 ~ 10781853 (+) False kcna7
TU28033 other downstream 870231 10778806 ~ 10781853 (+) False kcna7
XR_006250543.1 other downstream 1253779 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 1425184 11333759 ~ 11335825 (+) True LOC122331261

Expression Profile