RNA id: XM_043234912.1


Basic Information

Item Value
RNA id XM_043234912.1
length 3800
RNA type mRNA
GC content 0.45
exon number 24
gene id pdxdc1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14209727 ~ 14221810 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGCTGCCAGCGTGGAGCGGCATGACACCAGGAAGTAACACAATTCAATTGACGATACAAACAACGAAGAGAGAGGGTATCCGAGCTGGATTTTGGGGCTTTTTGGATTTGCTTTCCTAAAACACCAAGCACGCCACGACGCACTGGGGGCACGCAGAGTCCCTGCGACTGGGTTTTCAACATTGCATGGATAAGCCGCCTGTGAAGATGATGGACCCTACACTTGCTGAGATGGGAAACCATCTCTCTGATGCCATGAAGATTTTGGAAAGTGGAAAACTGGAATCTGAACAGggcaaagaaagaagaaagttgaGTTGGAAAGACATTCCGGGGCCCTTGCAAGGAGATGGACAGGATGTTGTCAGCATACTCCAGCTTGTCCAGAACCTGATGCACGGAGATGATGACAAGCAGGGTCATCGCAGGATGCAGTATGTCGGAGAGCAGGGACACATGGCTCTATTGGGACACAGTCTGGCTGCATATATTTCTGTCCTGGAACGAGAACGATTGAGAAAGCTGACCACACGCATCCTGTCAGATACCACTCTCTGGCTCTGCAGGCTTTTCAGATATGAAAATGGCTCAGCATATTTTCATGAAGATGACCGCGAGGGGCTGGTGAAGGTGTGTCGGTTGGCTATTAATACTCATTATGAAGACTACGCTACAGAGGGCTTTACGTTGCTCAGCTCTAAACATCCCGTGATTTACCAAAGTGCTGCATGCAGACCTGGCCTGGGACAACATCTCTGCAGCCAGCTGGGACTGCCTCTGTCAAGTCTTTGTATTGTGCCATGTAACACTATGTTTGGCTCCTTGCACCAAATGGATGTCGCATTGCTTGACAAGCTCATCAGAGATGATCGTGAATCAGGGAAGCTTCCGTTGCTGTTGATAGCGAATGCCGGAACGCCAGGTGCGGGTCACACGGACAAACTCAGTCGTCTGAAGGAGCTCTGCGTTCAGTACAGTATGTGGCTCCATGTGGAGGGGGTGAATTTGGCAACGCTTGTTCTCGGTCAGGTCTCTTCTACTGTCACGGCGGCCACAAAATGTGATAGTATGACATTAACTCCAGGCCCGTGGTTGGGTCTGCCGGCTGTGCCTGCTGTCACCCTTTACAGACATGAAGATCCGGCCCTATCTCTCACAGCAGGCCTGACGTCTAGCCAACCAGTGGAGAAGCTTCGGGCTTTGCCTCTCTGGCTGTCCCTTCAGTACCTTGGGCATGATGGGATTGTACAGAGGATTAAGCATGCCTCGGAGCTAAGTCAACAGCTGTTGGAGCATTTGAAGACACTGGCTTCGATAAAAACCTCGGATATCCTTGACAGTGAGGTGTCTCTCATCGAGGCTTTGCGCATGGTGGAGGATGAACTGAACTCCCCTGTAGTGGTGTTCAGGTTTTCACAAGACAACAGCACTCCCTCAAGTGGTGGCTCAGTAGAAGGCTATCTTACGGGGGAAAGGGATATCCTTGATGCCTTTAACAGATGGTTGGGTGAACAGTTGGCGCAGCAGGTTGCCCTAAGTGGTGTGGATGTGGTTGAGCTGGAAGATGAAGGCACATGTGTTCGCTTCAGCCCCCTCATGACCGCTGCAGcTCTTGGCACTCAGGAGAATGACGTGGCTGCACTGGTGGAAAAGCTGGGAGAGATGATTCCAGTGCTGAGCTGCACCCTACGCTTCAGACAGGACTTCAAGGATGAGGTTCTACAACAAGCTTCACTCACGTACATTGAAGACCAGAGCTGGCCTGGTCTTGGAAGTGTGAGGTTTGAGCCCAGAATCACAGACCTGGATGAAGACAAGAGACAACAGAGGGTGGAGAAGATCAACAGTGACTTGCTTAAGAGACTGATGGAGCTGGATACTGACCTCTACTTCTCTGATGGTCCTGAGTTTTGTGAGGACAAAAACTGCATATTCATTGGTATGGCAACAGAAGACCTGGATGTGGCAGAGTTGGTGGAAACTATAGTATCTATTGGAAGAGACATTGAAGAAAGTGGAAAGTTGTTTGAGAACATGACCGAGGTTGTGAGAAGAGGCATACAGGAAGCTGAGCAGCAGCTTCTGAAAGCGAATGAAGAAAAACTTATGGAGGAGGGTGTACTTCGACAGATCCCTCTGGTGGGCTCTGTGCTTAACTGGTTCTCCCCAGTTCAGTCCTCTGTCAAAGGAAGAACTTTCAACCTAGCTGAAGGTTGTCTGGACAGCACGGAGCCTGTTTATTCTATTAAAGCACAGATGAATAAAGAAGCTTCCCTCGATTCCCCCAAGTCCGTCACCAAACGGTTTCCAGGCCAAAAACTCTTCCGTCGGCACGGAGCCGGCTCAGACTCTGTCAGTGATACCAGCTCCGTCAGCCAGCTAGATGAATCATTCAGGGAAACGGCACCCGTTCAGGCCAGTGATGCAGAGGAGGCAGAGGTCCCTCAGGAGCGTCATGTCCACATAGAGGAGGAAACGGTTTTGTCAGACCAGCGTGTACCAGAGGGacaagagacagagagtgtAGACACCCTTAGATAAGACCACTCCTAAAGGGatgtccaggaggttggctttGTTTCATGGAGCGATATGCATCCGTGACCTTGATGCCTTGAGCAAACCACTCTTGAAATTAGGGAAAGAAGCAGCTTTAAATGCAAGTAACAAAAACACTGGAATTTCACTGAAATAATGTCTGAATACACATccctttttttatgtaatcagTTGCACATTTTTAAGGTTTGGATAATCGTATGTTATAGGGTCTCCTCACAGTTCTTTATGTGCACTGCCAGTATATCCTTCCATAATAGGTGACACAGCCATTAcgtttaggttttgaacgcttatcTTTGTCATCTATAGGCTTGTCTGACAGGTTTTTCTGATCCATTTCCACACATTATTTACACAACGAAAGGGCTATTGTGGCCTTACCGTCATGTACATTAATGTCAGAATGTCTTGTTTGCCAAAAGTTGGTGTGGCTTTATGTAGTCTCCACAGGCAGACGTGTGAGAAGGAAAGTTGATGCTTGACTCATGCAGCAGTTTCTAATCAAATGATAGCCTTATTGCACTTTTATGTACAGAATGTCACACTTTAATCAGAACagcagaatatttatttattctataaatAATTATCTTGGAGGACATTAGGCTATTTAGAGATGAGTAACATTTGCTATATAAAGTCTAAAGTATGTTTAAATCAAACAGATATCCATCCAGAACTTTTGGCTTTACCAATAGTGAAATGATGATAATTATATACTGTTCTCACTGTGAAGAATGTTTCAGAGATGTCTCTTTTgaataattgttacatttttggatgTGTATGAAGGCTAAAAATAATGTACTGAGATGAAGATCCTTATTTGTTGTTTACACCAATGTTAATTGTTTTagcacatacaaaaaaaagctttgctaCTGGGGAATTTATGTAGTTTCATTTAGCATATGAATATTGTGTGAATTATTAATGAGAAGTAAATTCATTACAGTTAGAACACGTCCATCCATATTTTTGGGGGTGCGTAAAGTGCTCTTTTCGTAACTGTGCTTCCTTACTGAATAATGTAATTGTAGATCTGCTCATCTTTTCAAAATTATTCTGTCTTAACTGGTGCAATAAATCATTGGGGGTTTTCTTTGGGGAGATGAGTGCTGACTTGAAATGTGTCAAAAGTAagaatagtgttttttttttttaatataattacagttttattttacaatgagCAGTTATgtaaatgacaataaagaaaatggtcctaaaacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29877 lncRNA upstream 58769 14148464 ~ 14150958 (+) True G20057
TU29727 lncRNA upstream 86599 14120436 ~ 14123128 (+) True smim22
TU29726 lncRNA upstream 87670 14120185 ~ 14122057 (+) False smim22
TU29725 lncRNA upstream 87670 14120436 ~ 14122057 (+) False smim22
TU29788 lncRNA upstream 107823 14100173 ~ 14101904 (+) True G20009
TU29948 lncRNA downstream 81340 14303150 ~ 14304893 (+) True G20113
TU29989 lncRNA downstream 157814 14379624 ~ 14457906 (+) True G20146
TU29987 lncRNA downstream 211895 14433705 ~ 14457906 (+) False G20146
TU30016 lncRNA downstream 395452 14617262 ~ 14618834 (+) True G20166
TU30018 lncRNA downstream 404982 14626792 ~ 14629316 (+) True G20168
XM_043234922.1 mRNA upstream 14405 14157724 ~ 14195322 (+) False si:dkeyp-72e1.9
XM_043234920.1 mRNA upstream 14405 14157726 ~ 14195322 (+) True si:dkeyp-72e1.9
XM_043234918.1 mRNA upstream 14405 14166409 ~ 14195322 (+) False si:dkeyp-72e1.9
XM_043234921.1 mRNA upstream 14405 14166409 ~ 14195322 (+) False si:dkeyp-72e1.9
XM_043233927.1 mRNA upstream 87673 14120379 ~ 14122054 (+) False smim22
XM_043234925.1 mRNA downstream 341 14222151 ~ 14229310 (+) True gspt1l
XM_043234926.1 mRNA downstream 10081 14231891 ~ 14239115 (+) True nde1
XM_043231272.1 mRNA downstream 33680 14255490 ~ 14273309 (+) True abcc1
XM_043231284.1 mRNA downstream 33680 14255490 ~ 14273309 (+) False abcc1
XM_043231276.1 mRNA downstream 33680 14255490 ~ 14273309 (+) False abcc1
TU29797 other upstream 90157 14118467 ~ 14119570 (+) True G20015
TU29734 other upstream 156695 14049490 ~ 14053032 (+) True G19973
unassigned_transcript_286 other upstream 296033 13913623 ~ 13913694 (+) True trnat-cgu
TU29613 other upstream 507374 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_277 other upstream 1321666 12887157 ~ 12888061 (+) False LOC122332158
XR_006248644.1 other downstream 33680 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 313369 14535179 ~ 14615408 (+) True G20148
TU30017 other downstream 397184 14618994 ~ 14622858 (+) True G20167
TU30025 other downstream 443109 14664919 ~ 14671568 (+) True G20172
XR_006250545.1 other downstream 443676 14665486 ~ 14665570 (+) True LOC122342199

Expression Profile