RNA id: XM_043234922.1


Basic Information

Item Value
RNA id XM_043234922.1
length 3590
RNA type mRNA
GC content 0.49
exon number 22
gene id si:dkeyp-72e1.9
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14157724 ~ 14195322 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTGTCTTACAGATTAGAAACTGGCATAGTTGAGTCTCTCTCTCGCCTGGCAGTTGAGGTATCATTGATTTAATGCTGAATGAACGCTGACTCTTGAGCGAGGCGGCGGACCACGAGCGTGACACGAAACCGCGGCGATGTGCGTGATGCTAATATTTGGAGGCAGCATTTAAGTCCGTTTCCAGAGCAGACTATTTTTATCCTTAACGTTTCTGTTGGATGCAATGTCCTATCTGAACCCCCGGGGAAGAGAGCTCGAGCGTTTTGATGGACTTTCGCTCATTTACTGGACACTGATGGGTCCGTATGGAGTAGATCGAGCAGTGCATTCTATGGAGTTTACAGACTGTGAGAATGGATTAGGAATCAAAGTGATCGGTGGTGTGAAAGAACTAACAGGAGAAGAATATGGTGTTTATGTGAAAAGGATCTTACCTGGTGGCCTTGCTTCCAGTGATggaAACCTGCAGCCTGGAGACCAAATCTTGGAAGTTAATGGTGAAAGCTTGATTGGCGTGACAAGTGAACGAGCGGTGGACATTCTTAGAGCAGCATCCTCAACCAATCACATGCGCCTTCTCATAGCCAGAGATGAGGAAGCCAGGAGAGAATTTGCAGAGCTCCTTGAAAAATACGGCTCAAACGGAAGCACAGGATCTACCAGGAATTCACCTATTCAGCATAGCAGATACTTGGACAGCACATCATCAGGGTCTTCATCCAGATCTCAAAGTCCTCTATTGCTCAGTCCAGCTGGGTCTCAGAGTAACTACAACACTACTGGACCTTTGCTACGCTCCCTAAGTCACCCAGGTGAGGGGGTGATTCAGCTGATATCAATCGCTCGCTCCTGCAGTCTGGGTATTACCATCGGCGGTGGCTCCAACAGACCTGATGGCCCTGCAGTTTTCATCCAGGAAGTGCTGTCTGGAGGAGATTGTCATCGGGATGGACGGCTcagacccggagatcagctTATCGCCATTAACAAGGAGTCATTGATAGGAGTCACGTATGAGGAGGCCAAAAGTGTGCTGAATAAAGTCAAATTCAGTCAGGAACCAGTGGTGGATGTTGCCTTCATCCCAGGAAAAGGACCTTTTTCCAACAGCCCATCGTTGCATAATGGAGTTCAGAGGGGGGTTGGAAACGGATACAACTCCAGCCGGTTAAAAGTTCATGTCCGATCTCCTGAGATGCAACGAGAGGAAACAGCTCCAGTGCTTTCCTCCTCCCCGGATATCTGCCCTCCAGACATACAGGTTTCAGCCTCCACCGTGCAGAGACAAACCACTGTTTCCAAACCCAAGATCTCGCTGGACCCCCACATACGGCTCAAATCAGAGAAGCTCGATCTGgcTCTGTCGTATCTGGGTCTGGATGTAACAGAGGAGAAGCGGCGGCAGCTCAGAGAGAGTCTCACTACAGACCCTCAGGGCACCGTCTCGTATGGAGACTTTGTGGAAGCCACCCGCAGCGTTTATCAGGAGAAGCTGGAGGAGGCGGGACTGGGACAGGGTCCCTTCATGTTCTCCTATCAGGAAGCAGCCAGTTTGATGGACACCTCTGCCTTTCATTCCCCAACATATGAGTCGGAGTGCAGCTACAGCAGCGAGGAACTCGAGGAGTTTCAGACTGAGGTCAAACAACTCCAGCTGCAAATGAAACAGCTGAAGGTGTTACTGAAAGACACAGAAGACAGCAAGAAGACTCTGGAGGAGGAACTGCAGAAGACGGCGGAGAAGGCCACAGCCACGGTGGAGGAGAACAAGTCTCTGAAGAGTAAGCTGCAGGTAGCGGAGGCTGTTCAGAGGCAGACTAACAGTGCCGAGCAAGACTACGAGGAGGTCATTCAGCTCCTGGAGGCTGAAATCAAAGATCTGAAGAACCAGCTCGCTGGGAAGAAACAGAGAGGACTGGAGGCTACTAAGGAGGATGTGTTGGAGCTGAACAGGAGGCTCACCACCACTGATAGTCAGTTAAGAAAGTCTGAACTCACACGAAAACACCTGGAGATTTCCAACAAAAAGCTCCTTGGCTTTGCACAGAATGTCCACAAAGTTCTCACTAACACCAGCTTATTTGGGATTGAAAGTGGGTGCGCTCGAGCGTCTCCAGTGACCGACAGCCCCGACACACCATCCCCGATCCCTGACAGCGCCTGCCAGCTCGCGGCTGAGGCCAAAGAGCTCGTGGACGGTGTCTGCTCGCTCTGCACTGAGGATCACACGTTAGTGCAGTACGTAGAGGGAGACGTTGTGAAGGCTGAAGAGGACTGTGATTCAGACCTCGTTCAGTGGCCACAACCTCCTGTCCTCGGGGCTCCTGCGGGAGAGCGGAGAGGTCAGTAGAGCATCTGGGATGGACAGACGAACCGGGCTCAATCAGAACAACGAGGCTGAACTGCAGCTCTCCTGTGGAAAATAAGAGACTGTGAAGATTTGCGGTGCGGTTTGTACTCTTTCAAGCAGTTATCAGAGGCCTGAGCTCTACTGATCAAACTCATACTCGTTTTTTCAACACAGTCCGTGTACATATTTAACACGTAGCAGTACTGAGTGTTATAACATAAAGGCAGAAACCAACCGAGGGAATAGAAATCTGAAACACCGACGTCACTCTTAACAGCAGAGGCGACTTTATGATGCTCGAATGTGACTTATAATACATACCGCATAGTTATGAAGACGATTTCATTCAGATGCGGTATATTTCCCCATTTCAACTGTAATGAAAACACATGTGGCTGTGCAGCTGACCTCTCTATTAGAGTTAGGCGTATTATACAGTACATGTATTACATTTCACCTAGGGATCTTTGGGACAGTCCCCACTCGTCATCATTTGATATGATGCTTATTTGTATCCGTTCTGAGAAGTGCTATgatgttttaaagattttatattttcggtccaaatcttttattattcataGACACGTAGACACGCTCGCTTGTAAGTACGTGCGCGGTTGCCGTCAGAAACCTTGTAAATCTAGCCGCCGACCCCTTCGATGTCCTCTTCATGTCTTTGCCGATCATGTCAGTCTACACTGGGACGCATTTGCGGTGCAGGTCAGTCCAATGtcacccagcatgcactgcgTTACGATCAGTTATGGTCCGTTGAGTCCTTTGGGGGGAATCTTTCGTGGTTCGTTGGGTTGATGGACGTTGATTGCTCCATCTCGGAATCTTTGGGACTATGCTGATTGTTCTGGGGGGGGATTTGGCTCGTCACGGCGCTGGTGTGGAGTAATGGGAGTCATATTGCAGCGTTCCACCCCGAATGCATCCATTCAGCTGAACAATGCACATGGTTCGGGTTACTGTTTTCATAAGCACACTGTATTCGGCTGTTTTGTCTTGCCGTATAGGATCTACAGTCACTTATATCAATGTGTAATAATAAGCTGGTGTCTTTCATTTCCTGAGGATAGAGGTTTACGGTCATGCAGATggtttgttaatataaataacagcacATGCTCTGCAAATGCTGACACGTAGTCCTGTGATTTAACTAGATTGCATCATATGTGTGGCCTGAATTTCTTtcgtttaatgtttttattaaagtctGAACAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29877 lncRNA upstream 6766 14148464 ~ 14150958 (+) True G20057
TU29727 lncRNA upstream 34596 14120436 ~ 14123128 (+) True smim22
TU29726 lncRNA upstream 35667 14120185 ~ 14122057 (+) False smim22
TU29725 lncRNA upstream 35667 14120436 ~ 14122057 (+) False smim22
TU29788 lncRNA upstream 55820 14100173 ~ 14101904 (+) True G20009
TU29948 lncRNA downstream 107828 14303150 ~ 14304893 (+) True G20113
TU29989 lncRNA downstream 184302 14379624 ~ 14457906 (+) True G20146
TU29987 lncRNA downstream 238383 14433705 ~ 14457906 (+) False G20146
TU30016 lncRNA downstream 421940 14617262 ~ 14618834 (+) True G20166
TU30018 lncRNA downstream 431470 14626792 ~ 14629316 (+) True G20168
XM_043233927.1 mRNA upstream 35670 14120379 ~ 14122054 (+) False smim22
XM_043233924.1 mRNA upstream 46403 14102015 ~ 14111321 (+) True rgs9a
XM_043235112.1 mRNA upstream 73218 14076202 ~ 14084506 (+) True slc16a6b
XM_043234933.1 mRNA upstream 84320 14063275 ~ 14073404 (+) False wipi1
XM_043234912.1 mRNA downstream 14405 14209727 ~ 14221810 (+) True pdxdc1
XM_043234916.1 mRNA downstream 14405 14209727 ~ 14221810 (+) False pdxdc1
XM_043234913.1 mRNA downstream 14405 14209727 ~ 14221810 (+) False pdxdc1
XM_043234917.1 mRNA downstream 14405 14209727 ~ 14221810 (+) False pdxdc1
XM_043234914.1 mRNA downstream 14406 14209728 ~ 14221810 (+) False pdxdc1
TU29797 other upstream 38154 14118467 ~ 14119570 (+) True G20015
TU29734 other upstream 104692 14049490 ~ 14053032 (+) True G19973
unassigned_transcript_286 other upstream 244030 13913623 ~ 13913694 (+) True trnat-cgu
TU29613 other upstream 455371 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_277 other upstream 1269663 12887157 ~ 12888061 (+) False LOC122332158
XR_006248644.1 other downstream 60168 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 339857 14535179 ~ 14615408 (+) True G20148
TU30017 other downstream 423672 14618994 ~ 14622858 (+) True G20167
TU30025 other downstream 469597 14664919 ~ 14671568 (+) True G20172
XR_006250545.1 other downstream 470164 14665486 ~ 14665570 (+) True LOC122342199

Expression Profile