RNA id: XM_043234940.1


Basic Information

Item Value
RNA id XM_043234940.1
length 2337
RNA type mRNA
GC content 0.47
exon number 14
gene id wipi1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14063273 ~ 14073404 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTATGTGATGTTGATGTGACGCAACAACGATCAgctggttttgttttgcttcattCTCTCTGCTCCGCTTGAAGTCGTAAATGTACGAAAAACTCGcgttttaattcattaatgtgAGGCGGAAGAACAGTCGAAGCGTCGGAGTATTCGTCTTCCACTTTATCCGGACCATCCAGTTTTTCCTCAGTAGGTCTACGCTTTGCCACTATCTTTCCGAGCGGTCCAGCCGATCCCAGGCCTCCGATCCAGGGCGGAGGGAGGGAAGGAGGTCGTTGGGAATCGGGATGGAGACCGGAGATGTTGGGCCGGGGCTGTGCTGCGCCTCCTTCAACCAGGACTCCACCAGCGTGGTCAGTGACGGTGGAGACGTACTTATGTTCTTCAATAAAAGTAGGAAAGGACATGCTAAGCACAAGATCTGACATGAACAACTTCGTCTAAAGGAATGAGGAGCCTGCGAAACAGATGTGGATCTTATTTCCTTAACTAAATAGGTCTCTGGCCGTGGGCACTAAAACTGGATACAGACTATTCTCTGTGACCTCAGTGGACAAACTGGACTGCATTCATGAGAGCACAGAAACTCCAGACGTGTATATCGTGGAAAGGCTTTTCTCCAGCAGCCTGGTTGTGGTGGTGAGTCAGTCCATGCCACGTCGCATGAATGTCTACCACTTCAAAAAGGGCACCGAGATCTGCAACTACAGCTACTCGAACAACATTCTTGCAGTGCGTCTAAACAGACAGAGACTGGTTGTCTGTCTGGAGGAATCCATTTATATCCACAATATAAAAGACATGAAACTCCTGAAGACCCTTCTCAACACGCCATCCAACCCATCAGGTCTCTGTGCTCTCTCCATCAACCATTCCAACTCTTTTTTGGCATATCCAGGAAGTGACACCATCGGAGAAATTATTGTCTATGATGCCAACAATCTGAGCACTGTGACCATGATTCCAGCTCATGACAGTCCACTCGCTGCCATCACCTTCAGTGCTTCCGGCACCAAACTGGCCAGTGCTTCTGAAAGGGGCACAGTGATTCGAGTCTTCTCCGTTCCAGAGGGACTGCGCTTGTTTGAGTTTCGCCGTGGAATGAAAAGGTATGTCAACATCAGCTCCCTTTCCTTCAGCCCGGATGCTCAGTTCCTCTGCGCCTCAAGCAATACAGAGACGGTGCACATTTTCAAGCTTGAACAGCACAGCCCAAGTGGGGAGGAGGAAGCTCCCTCTTGGTCAGCGTATGTAGGTAAGATGTTCACAGCAGCCAGTAGCTACCTCCCAGCACAGGTATCAGGCATGATGAGTCAAGACCGAGCCTTCGCCACCGTCCGACTCCAGATGGCGGGTCAGAAAAATGTCTGTGCCCTGGCAACaatccagaaGCTTCCACGTTTGCTTGTGGCGTCCTCTGATGGGCAGCTATTCATCTATAATATTGATCCTCAAGATGGGGGTGAATGCACTCTGGTGCAGAAGCACAGGTTGTTTGGATCAGATAAGGACTGGGAGGAGACTGAGAAATCCGAACTCACAGAGCCACCGCAAGCATGCCAGTCCTATGCTGCCACCGTGGCCATCCCCACCTCTGGACCCGTTACAGCCACTCTCACAGGCTACTCAGAGGATGGGGGAGCTAAGAAGGGCGAAGTGATTCCCGAGCACGAGTTTGCAGCAGGGCCTGTGTGTCTGGACGACGAAACTGAATTTCCTCCCATAAATTGGTGCCGTGACGGATCTGGGAGAGGCAAGGGGAGACGACCGTGAGAGGGTAGAGAACAGGTGGAGGCTGCAACTGTCACAGGAGGATCCTCAGTGCATGAGCAAGGACAaacgaataaaaaaataaataaattaactaactTCAGGGTGCTAAATTATTACAGGAACGGTTTGAAATGATAATATCTTACACATGAGTTGATCAGGGATTTGGGTCGTTGTCGCTCAGACCCCTGAAGGGTGTGTTATAAATGAGGTGCATGACTGAAATATAACCACATATTGTTCTAGTTACGTAAACACATCGTATTAATTCAGTCGTAATACTGtagcattttattcttttaatttataacaCCATCATATTGAATCATAAGAGAAGAggaattacttttttatatatgtgttttgcTGTATTGATACTTAATATGTTTACATGTTACCATCCTGAATACTAATACAACGGGATGTTTTGTATGTACGTGCCTATGATATTACTTGTAAGAGTGCAAAGTATTTTGCTGGATTGCTCAAGAccaaaagctaaaaaaaacaaacaaaaaaaagaaattatgtaGGAAATCTATTAGGAATGAAATTATGCAAAACA

Function

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0005829 cytosol cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0034045 phagophore assembly site membrane cellular_component
GO:0050681 androgen receptor binding molecular_function
GO:0030331 estrogen receptor binding molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
K17908 WIPI1_2, ATG18; autophagy-related protein 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29750 lncRNA upstream 66194 13996470 ~ 13997081 (+) False slc16a3a
TU29717 lncRNA upstream 119784 13940616 ~ 13943491 (+) True G19963
XR_006250533.1 lncRNA upstream 143006 13913926 ~ 13920269 (+) True LOC122342149
TU29625 lncRNA upstream 245053 13815353 ~ 13818222 (+) True G19891
TU29624 lncRNA upstream 270720 13787833 ~ 13792555 (+) True G19890
TU29788 lncRNA downstream 26769 14100173 ~ 14101904 (+) True G20009
TU29726 lncRNA downstream 46781 14120185 ~ 14122057 (+) False smim22
TU29725 lncRNA downstream 47032 14120436 ~ 14122057 (+) False smim22
TU29727 lncRNA downstream 47032 14120436 ~ 14123128 (+) True smim22
TU29877 lncRNA downstream 75060 14148464 ~ 14150958 (+) True G20057
XM_043234945.1 mRNA upstream 821 14057644 ~ 14062454 (+) False zgc:86896
XM_043234944.1 mRNA upstream 821 14057652 ~ 14062454 (+) True zgc:86896
XM_043235003.1 mRNA upstream 27250 14029505 ~ 14036025 (+) False dus1l
XM_043235002.1 mRNA upstream 27250 14029545 ~ 14036025 (+) True dus1l
XM_043228897.1 mRNA upstream 60897 13996886 ~ 14002378 (+) True slc16a3a
XM_043235112.1 mRNA downstream 2798 14076202 ~ 14084506 (+) True slc16a6b
XM_043233924.1 mRNA downstream 28611 14102015 ~ 14111321 (+) True rgs9a
XM_043233927.1 mRNA downstream 46975 14120379 ~ 14122054 (+) False smim22
XM_043234922.1 mRNA downstream 84320 14157724 ~ 14195322 (+) False si:dkeyp-72e1.9
XM_043234920.1 mRNA downstream 84322 14157726 ~ 14195322 (+) True si:dkeyp-72e1.9
TU29734 other upstream 10243 14049490 ~ 14053032 (+) True G19973
unassigned_transcript_286 other upstream 149581 13913623 ~ 13913694 (+) True trnat-cgu
TU29613 other upstream 360922 13698574 ~ 13702353 (+) False rbbp6
TU29192 other upstream 1075362 12835381 ~ 12987913 (+) True LOC122332158
TU29797 other downstream 45063 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 182086 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 461775 14535179 ~ 14615408 (+) True G20148
TU30017 other downstream 545590 14618994 ~ 14622858 (+) True G20167
TU30025 other downstream 591515 14664919 ~ 14671568 (+) True G20172

Expression Profile