RNA id: XM_043234944.1


Basic Information

Item Value
RNA id XM_043234944.1
length 1941
RNA type mRNA
GC content 0.42
exon number 10
gene id zgc:86896
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14057644 ~ 14062454 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCTTACAACAGCTCAGCCTCATTCGTGTCGACTGCCCAGAGTCCACGAACATAGCCTTCCAACAACTCTCCAGCACAAGGATATAGGAAATATCACTATCTAgcaaaagagaggaagagattaAGTCACATTCATTTTCCTGATTGCATGCTCTTCTTAACATCTGCGGTGCATTCCAGGGTTTCCCTGTTGAAACATGTCCCTCTATAGCTTTGGATTGGAGCCTCTGTCTTGTCATGCCTGGAACAAGGACCGGACACaaattgCAATAAGTCCCAACAGCAACATTGTGCACATTTaccaaaagaaaggaaaggaatGGACTAAGATTCATGAACTGACGGAACACAGTGGGCGAATCACAGggATTGACTGGGCCCCAGAGTCCAACCGTATAGTGACCTGTGCCTCAGATAGGAATGCCTATGTATGGACACTTAAGGATGGGGTTTGGAAGCCGACTTTGGTCCTGGTTCGCATTAATCGAGCTGCCACATGTGTCAAGTGGTCACCACTCGAGAACAAGTTTGCTCTTGGAAGTGGGGCTAAACTTATTTCAGTATGCTACTTTGAAAAAGAGAATGACTGGTGGCTAAGTAAGCATATCAAGAAACCCATTAACTCCACTGTTCTGAGTCTAGACTGGCATCCCAATAATGTTCTGCTGGCAGCTGGCTCAGCTGATCTGAACTGCAGAATTTTTTCTGCATATATCAAGGACATCGAGGACAAGCCTGGACCAACACCCTGGGGGTCGAAAATGCCCTTTGGAGAGGTGCTTCTGGAGTATAAAGAGTGTGGCGGCTGGGTACACAGCGTCTGTTTCTCCCCGTCTGGTGATGCTCTGGCCTGGGTTAGCCACAACAGCGCCATCAGTGTAGCAGATGCCACACAGGGAAAGGAGGTTACTCAGCTGACAACAGGACATCTTCCTTTGCTGAGCGTGCTGTATGTGAGTGAGACAGAGATTGTAGCTGCGGGCCACGACTGTTGCCCTTATCAGTTCTCATACAAGGGTCTTGGATGCCTGGAGTTTGTGAAGAAAGTGGACATTCCCAAGCAGAGCTCCAAGGGTAACATGTCAGCCATGCAGCATTTCCGTAATTTGGACAAAAAAGCAACTACTGAGGAGGAGGAAACTGGGTTGGGCAGTCTGCATCAGAACAGCATCACTCAGCTGTGTACTCTGGAAGGGCCGAAAGCCAAGGTGGAGAAATTCAGCAGTGTGGGCTTAGATGGTGCCATGGTTGTCTGGGATTTTAAGcaCTGAAACACCATGGGATCTGGAAAGAGcagaaaacaacaataataattgagGATCATCTTTataagtttgtttgtttctcagaaACCTCTTAGCCTTTACTACAAAAGTTACACATTAAAGTGATTAAAGCCGGttgattttattatgattaatatGATATTTCATTGCTATGGAATGTTAGATGGCCGATCCCAAATGTGTGGTATGCAGTAGTTTTTGTCATGCAGTATTAATTCATCTTAACACTGAACCCAGGTTTTCGAAAAtaagcaaacataaaaatgattatttagcACCAAAAAGAGAATTAACAGTGTATGCAATgactataataattttttttttacaccaaatGTGCTgctattgtaataaaaatttagatttgaccaaaaaaaaaaaaaaatcaacaaacaaataaagaaatcattctttaaaaagttGGGTGAATTCGTTTCGCTCTCTCTTGTTGCAGTACTGCAGAAGATTGTTAGATACAAATAACTATGAGTGAGCCATCAGAGCCGATGTAGTGAGGAGAAAGTTCAAAGCggaaataagaataaaacattCCAAAATTACTTGACTGTATTACAGTTACGCATTTTGTAatgaaaagacattaaaattgtgaaaaactgagagacacaaataaaatttgtgttatgtttctga

Function

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29750 lncRNA upstream 60571 13996470 ~ 13997081 (+) False slc16a3a
TU29717 lncRNA upstream 114161 13940616 ~ 13943491 (+) True G19963
XR_006250533.1 lncRNA upstream 137383 13913926 ~ 13920269 (+) True LOC122342149
TU29625 lncRNA upstream 239430 13815353 ~ 13818222 (+) True G19891
TU29624 lncRNA upstream 265097 13787833 ~ 13792555 (+) True G19890
TU29788 lncRNA downstream 37719 14100173 ~ 14101904 (+) True G20009
TU29726 lncRNA downstream 57731 14120185 ~ 14122057 (+) False smim22
TU29725 lncRNA downstream 57982 14120436 ~ 14122057 (+) False smim22
TU29727 lncRNA downstream 57982 14120436 ~ 14123128 (+) True smim22
TU29877 lncRNA downstream 86010 14148464 ~ 14150958 (+) True G20057
XM_043235003.1 mRNA upstream 21627 14029505 ~ 14036025 (+) False dus1l
XM_043235002.1 mRNA upstream 21627 14029545 ~ 14036025 (+) True dus1l
XM_043228898.1 mRNA upstream 55274 13995961 ~ 14002378 (+) False slc16a3a
XM_043228897.1 mRNA upstream 55274 13996886 ~ 14002378 (+) True slc16a3a
XM_043235136.1 mRNA upstream 70880 13982254 ~ 13986772 (+) True scpep1
XM_043234938.1 mRNA downstream 819 14063273 ~ 14073404 (+) False wipi1
XM_043234935.1 mRNA downstream 819 14063273 ~ 14073404 (+) False wipi1
XM_043234939.1 mRNA downstream 819 14063273 ~ 14073404 (+) False wipi1
XM_043234936.1 mRNA downstream 820 14063274 ~ 14073404 (+) False wipi1
XM_043234940.1 mRNA downstream 821 14063275 ~ 14073404 (+) True wipi1
TU29734 other upstream 4620 14049490 ~ 14053032 (+) True G19973
unassigned_transcript_286 other upstream 143958 13913623 ~ 13913694 (+) True trnat-cgu
TU29613 other upstream 355299 13698574 ~ 13702353 (+) False rbbp6
TU29192 other upstream 1069739 12835381 ~ 12987913 (+) True LOC122332158
TU29797 other downstream 56013 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 193036 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 472725 14535179 ~ 14615408 (+) True G20148
TU30017 other downstream 556540 14618994 ~ 14622858 (+) True G20167
TU30025 other downstream 602465 14664919 ~ 14671568 (+) True G20172

Expression Profile