RNA id: XM_043234964.1


Basic Information

Item Value
RNA id XM_043234964.1
length 5005
RNA type mRNA
GC content 0.49
exon number 23
gene id dnm2a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6796786 ~ 6833224 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCGCGTCACCGGTGGAGGTCGGATGTCGCCTGACCGGATGATAGCgagaagttttgttttgtgagtttACGAATGATTGATCCTCAGATCAGTGCACGGATCTTAACGTATGCGCCCTAATACGCGTTATCTGCCTGTCAGCGAGTGTTTGATCAGTTGTTTGTCTTTGACGGACTGAACTGGAAGTGTTTGAAGGGTGGAAACTGAACACTTGGAAGTAACCCGAGCGCCCTGCTGCCGCGAGCCCGTTCCTGCGCGCTGAGAGACGGTCAGAAACCATGGGCAACCGGGGGATGGAGGATTTGATCCCCCTGATCAATAAACTCCAAGATGCTTTCAGTTCCATTGGCCAAAGTTGTAACTTGGATCTGCCGCAGATAGCCGTGGTTGGAGGACAGAGCGCCGGAAAAAGCTCGGTGCTGGAAAATTTCGTCGGCAGgGATTTCCTTCCCAGAGGCTCTGGCATCGTCACCCGCAGGCCTCTCATTCTGCAGCTAGTTAACAACAAAGCTGAATATGCGGAGTTCTTGCACTGCAAAGGGAGGAAGTTCGTGGACTTTGATGAAGTCCGGCAGGAAATTGAAGCAGAGACGGACAGGATTACGGGGTCCAATAAGGGCATCTCTCCTATTCCCATCAACCTAAGGGTTTACTCCCCGCACGTGTTGAATCTGACTCTCATCGATTTGCCGGGAATGACTAAGGTTGCCGTGGGCGACCAGCCGGTAGACATCGAGCACCAGATTCGAGACATGATTATGCAGTTCATCACTAGGGAAAGCTGCCTGATCCTCGCCGTCACTCCGGCCAACACCGACTTGGCCAACTCCGACGCTCTCAAAGTGGCTAAGGAAGTGGACCCTCAAGGTTTGCGTACCATCGGTGTGATTACTAAACTGGATCTAATGGACGAGGGTACAGACGCCCGGGATATCCTGGAAAATAAACTCTTACCACTGCGTAGAGGTTACATTGGCGTAGTGAACCGAAGTCAGAAAGACATAGATGGCAGGAAGGACATTCGTGCTGCACTGGCAGCAGAAAGGAAGTTCTTCTTGTCCCACCCCAGTTACAGACACATGGCTGAACGAATGGGAACACCACACTTGCAGAAGGCCCTCAACCAGcaattgACCAACCACATCCGGGACACGCTACCCGGCCTGCGCAGCAAACTCCAGTCTCAGCTTCTCTCTCTTGAAAAAGAGGTGGAAGAATACAAGAACTTCCGCCCGGATGACCCTACGCGAAAAACCAAGGCCTTGCTACAGATGGTCCAGCAGTTTGGTGTGGACTTCGAGAAGTGCATCGAGGGGTCCGGAGACCAGGTGGACACGGCCGAGCTGTCCGGAGGTGCTAGGATTAACCGAATTTTCCACGAGCGCTTCCCCTTCGAGCTGGTCAAGattGTGTTCGATGAGAAGGAGCTCCGGCGAGAGATCAGTCATGCCATTAAGAACGTCCATGGTGTCAGAACTGGGCTGTTCACTCCAGATCTGGCGTTTGAAGCCATCGTGAAAAAGCAGATCATTAAGCTGAAAGAGCCCTGTCTGAAATGTATCGATCTGGTTATTCAAGAGCTCATCAACACAGTCAGGCAGTGCACCAACAAGCTAGGCTCTTACCCCAGACTGCGAGAAGAGACCGAGAGGATTGTCACTACTTacgtcagagagagagaaggcaaGACCAAGGACCAGgtCCTTTTGCTGATTGACGTTGAGCTGTCATACATTAACACCAACCACGAGGACTTCATTGGATTTGCAAACGCCCAGCAAAGGAATATCGTCAACAAGAAGAGGGCCATTCCCAACCAGGGTGAAATACTGGTGATCCGCAAAGGCTGGCTAACCCTCAACATCAGCATTATGAAGGGCGGCTCCAAAGAGTACTGGTTCGTCCTGACGGCCGAATCACTATCCTGGTACAAGGACGAGGAGgaaaaagagaagaaatacATGCTTCCTCTGGACAACCTAAAGCTCAGAGATGTAGAGAAAGGCTTCATGTCAACTAAGCATATTTTTGCGATCTTCAACACTGAGCAAAGGAACGTCTATAAGGACTTGCGTCAGATCGAGCTGGCCTGTGATTCGCAGGAGGACATGGACAGCTGGAAAGCCTCTTTTCTCCGAGCAGGAGTTTATCCTGAGAAAGATCAGgtggagTCAGAAGAGGCTGCTCCCGCCGACACCTTCTCCATGGACCCTCAGCTGGAGAGGCAGGTGGAGACCATCCGTAACCTGGTGGACTCTTACATTGGTATCGTCAACAAGACCATCAGAGACCTCATGCCCAAGACTATCATGCACCTCATGATCAACAGCGCTAAAGACTTCATCCACTCGGAGCTGTTGGCGTACCTGTACTCCTCAGGAGATCAGAACAGTCTGATGGAGGAGTCCGCTGACCAGGCCCAGCGCAGAGATGAGATGCTGCGTATGTACCACGCCATAAAAGAGGCCCTCAACATCATCGGTGACATCAGCACCAGCACTGTGTCCACTCCTGTGCCTCCGCCCGTCAACGATACCTGGATTCCAGAGACTAGCCCCACCCCCCAGCGCAGACCGCCTACATCGGCCCCCCCCAGCAGGCCTCCAGCAGTGCGAGGTCCAACACCAGGCCCGCCCTCTCTTAACCCCACCCCTTTTGCAGCCCCACCCATTCCCTCTCGCCCAGGCCAGCCCATTAATGCCTACAGCAACAGCAGCCAGGACCCTTTCAGTGCCCCTCAGATCCTCTCCCGTCCCGCCCGCGTCCCTCCAGGCATCCCCAGCAGAAGACCCCCTGGCGCTCCCAACCGGCCCACCATTATCCGCCCCGCCGAGCCCTCCCTGCTAGACTAGACCCGTGCGCTGGCCACCGTAGgctgacagaaagaaagaaagagagagagagagaggaagggctGGAGAACTGCACTGAAAACATGTGCATGTGTTTCTACACATACAGCCTGACCAATAGACCTAAATAATCCACTCAAACTGTCCTCTGATCAGCGCTGCTAATCTCATCCTTACTTTTAAAGCCCAGAGGTCTAAATTAAGCACATAAATATTCAGTTaagattattattgttgttattattttgtagaGTGAACTAAAGGGTGTAGTGGCCTCCAACTTTCAGTCATTTCATCACTCACATAGGTCAGTTGACCACCAGGGGGTATCCTACTCAACTTGTAGACGAACCAACATTAGCCTCCTCTCTGACTAGTGGTTTAACGTCGGATAAGATGTATACAAGCACTGTGCAAGCTAGTCGCTGTTAAACTAGCCTCTTCTTCCGGTTCTTGGGTAACTTAAGGGTTGTCGAAGACTCTTTCTTGTTATAGACACACTTcttcatgtgtttttgttttcattctgtgttttctctACTCTCTAACTTGATATGCTGAAATAAGACACCACGACCGTTGTTGTTATTGCTGTGTAGGACtggtttctttgtttttcatgttccaTTGGCCGTTTATGTTTGAGATCCTTCAAAACGGCACTTAGCACCAAGCGACTGTTAATTACGACTCGATAGCAGCTAACCGATCAGAGAAATGCAAACAtacaagtcaaaaaaaaaaaaaaaaaaaaaaaagatgttgacGAGCAGCATCCTGTTTCTTTTGCGTTCGGGAAATTTGGTTCTTGAAAAGCACTTCTTGTTCTCGAGTGTTGGGAATTTCTTAGATAGTCAGAAGAGAAGTTGCCGTTTGTATGCAAATCTCTGTAACGACctgtttatacaaataataatctGTGTATGTGAATTTAATCCTGGAAAGCACGGTAACCACTCGCGACGGGCCCCGACCCGTCAGAGCTCAGAGCTCAGGTAACATCCGACTCCAAATCACGTAAACGTTTACGCTAGCTTAGCGCTCCGATCGTTGTAACTTAAATTAATCTGCAAGGCGTTTTTATTTTCGCATTCAGGGATAGTGAGGGCCGGGGGGGAGGGTTAATGAGCGGGAAAAACATCGGGGCGCTACAGGAAGTTGGGAATGCTTTCAGACACGGGGTCACTGAACATGGTACATGCAGGTGCATTTGGGGTCCGGGGGCGTTTGCTTTATGGAATCAATCCGCTCTTGCCTACAAAGACACAGGGAACTTTCTGAACGCAAACAGTGAACCTTTAACGTAGAGATCATAGATGTACTAACACGCATATTTCCGagtgtattatttataaccTGGGCATTTGTCTTTGTGCTGATTTGCATCTTTCACAAACCGTTTGCCTCCGAGTAGAAAGACAGACGCTCTTCGATTCATGCCCCTTCGGTTGCGTTAACGGTAGTTGAACAGAATTCAGAGTGAACGCGGTCCAGCTGTTGATCCTGACTTGATTGCAGAATCTTTCGACGTTTGCTTTTATTGATGTGCGTGCGAGGAAACGGGCTGCGACGAATTTCGTTTTCTTGATTAACTTGAGGATAAGAATAGAGATTTGGCGTAAGTGGGAGCGGGTCTTCGATTTTTAGCATCGATTCGCCTGTAAATAATCGAAGGCTTGGAGTCGGACTTGAGGTGAAACTTAAAAATTAGCTGCAGATTTCAGGGCTGAACGCTCTTTAATCACTCCTCTGTGTTATGGCTACAGTGATGGCAACCGCTGCTCCTCCTTCATCCAGTTCAAGGTTTGAATTAAAATCGCATCCAGCCGTATGTTTTCCGATTTCAAATTACTTCAACATCTGCTAAGAACTGGATAAAGCCCAGATCACTGCAGCCATAACTTTTCCTCTGGTCTTTGGCTGTGGTGACCCCGATCCCCGTCTCTCCCTCTAATAATTGTGTCCTTTTGTATGGAGTGAGGGACGGAGGACATATTTAGCAtcctttttttatgcttttggaATAACAAATCATTGTCAAGTGCCTGTGTAGCAATTAAAATGGACTTGGAGCAAAATGCACAATGAGAATTGGAAGtgagatgatgataataaaaggTGTTGTGTATAATAAAGATCTGGTGCTCTGGT

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0061061 muscle structure development biological_process
GO:0060026 convergent extension biological_process
GO:0009790 embryo development biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K23484 DNM2; dynamin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26380 lncRNA upstream 91381 6705195 ~ 6705405 (+) True G17663
TU26379 lncRNA upstream 92084 6704414 ~ 6704702 (+) True G17662
TU26329 lncRNA upstream 171490 6623688 ~ 6625296 (+) True G17630
TU26258 lncRNA upstream 321167 6475099 ~ 6475619 (+) True G17584
TU26226 lncRNA upstream 359818 6436732 ~ 6436968 (+) True G17560
TU26412 lncRNA downstream 13714 6846938 ~ 6847606 (+) True G17683
TU26442 lncRNA downstream 69522 6902746 ~ 6903161 (+) True G17699
TU26448 lncRNA downstream 88972 6922196 ~ 6976265 (+) True G17704
TU26565 lncRNA downstream 361558 7194782 ~ 7266722 (+) True G17791
TU26582 lncRNA downstream 432119 7265343 ~ 7282946 (+) True G17806
XM_043233639.1 mRNA upstream 112588 6679181 ~ 6684198 (+) True trim35-12
XM_043233643.1 mRNA upstream 118069 6670199 ~ 6678717 (+) True gipc1
XM_043233644.1 mRNA upstream 118069 6670199 ~ 6678717 (+) False gipc1
XM_043235363.1 mRNA upstream 126777 6665977 ~ 6670009 (+) True dnajb1a
XM_043235360.1 mRNA upstream 140170 6649673 ~ 6656616 (+) True samd1a
XM_043234966.1 mRNA downstream 7795 6841019 ~ 6846641 (+) True tnfsf14
XM_043233908.1 mRNA downstream 29185 6862409 ~ 6888805 (+) True ppap2d
XM_043235962.1 mRNA downstream 315698 7148922 ~ 7157297 (+) True si:ch211-207b24.4
XM_043225616.1 mRNA downstream 327530 7160754 ~ 7164555 (+) False LOC122329403
XM_043225607.1 mRNA downstream 327530 7160754 ~ 7164555 (+) True LOC122329403
TU26266 other upstream 240036 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 240036 6504915 ~ 6556750 (+) True G17590
TU26037 other upstream 601764 6192740 ~ 6195022 (+) False LOC122341437
XR_006250506.1 other downstream 822808 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 1116537 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 1116580 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 1117630 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 1126847 7960071 ~ 7962295 (+) False LOC122341279

Expression Profile