RNA id: XM_043234974.1


Basic Information

Item Value
RNA id XM_043234974.1
length 6687
RNA type mRNA
GC content 0.53
exon number 31
gene id spag9a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25455160 ~ 25484444 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttaattttctttgtcgGCTGAACACTAACCCTCATGATTCGGATCCCGCAATCTCGCCGAGGAGGCTAGTTATCAAACCAATTGATGAAACGCTTCGTCCCGTAATGTGAAGCGTGCCATTTCAATAAACAGCACCGCGGAGAAACACGACAACGCCAGATATGAATATGATCACGTGAGCTGGTGTTGTGGCGCGGCTCCTGCCCGTTAATACTTGTGACGGCGCGCGGCGCGGCGCGTTACGGTACGGCGCGTGACGTCACCGCGCGAGCGTCTGGTCCACGGCTCCGCTGTTGTGTGGCGACCGCGGGAAGAAAAACACATCGGCCGGTTCCAGGGAGGGACGCTGGACTTCCGCGGGGTCACTGCGGCCGTGTCTCGGACAAGATAACGGAAATACACCGGCTTTTCGTCCCTCGGACACAAACCGAGACTCGTTGGTCCGGAACGGCGGAGGTCTGGATCTAGGACGGTCTCTCTGGAGAGGAAGGAAAATGGAGCTGGATGACGGAGTTGTGTACCAGGACGATCCGGGCACGTCGGCGATCATGTCGGAGAGGGTCTCGGGCCTGGCCAACTCCATCTACCGCGAGTTCGAGAGGCTCATCCGCAAATACGACGAGGACGTGGTGAAGGAGCTGATGCCGCTGGTGGTGGCGGTGCTGGAGAACCTCGACTCGGTGTTCGCCGAGAACCAGGAGCACGAGGTGGAGCTGGAGCTGCTCAAGGAGGACAACGAGCAGCTCATCACTCAGTACGAGCGCGAGAAAGCGCTCAGGAAGCACGCCGAGGAGAAGTTCATTGAATTTGAAGATTCCCAAGAGCAAGAGAAGAAGGATTTGCAGAACCATCTGGAAAGCCTTTCATCACATTCCCGTCAGCTGGAGCTGAAGATCAAAAACTATGCTGACCAGATAAGTCGATTAGAGGAGCGAGAGGCCGAACTGAAGCGCGAGTATAATTCCCTTCACCTGCGGCACACAGAGATGATCCACAACTACATGGAGCACGTGGAACGGATCCGGATGCAGCAGACGGGAGGAGAGAGCTCTGACACGGGAACAATTGGCCGAGTTCGgAAAGAGCGGCCCTTGTCTCTGGGAATCTTCCCCATGTCCGGCGGTGGCCCTTCACTGACGCCTGACATCCAGGGCAGAGCTGAGACTCCTGGGATGGAGGGCTGGAGATTTAATAACCTCAGTCATCAGCGCTCTAATGCCAGCCTCAAGCAGTTGGAGGCGGAGGACACTCCAAAGAAAAGGGATGGTAAGGATGTTCTGGAAGCTTGGGACTCGCTGGCAAACGACTGCAAGGAGGAGCTGTCTGACCTCAGCCAGGGAGGCTCAAAGTCTGTCACTCCCATGTCCACCACTGCCTCAGATCTGGCCCTGGACTCGCACAGAGAGGACGGAGAAGGATTCTGGAAGAACACCGAGGTTCAGGCCGTTCCTGGGACCAGGAGCGTCTCTGCGGGCCTGGCTGATGATGAGGAAAAGTCAGATGTTCAGGCCATTATTGAGTCCACGCCGGAGCTCGACATGGACCTCGGCTATAAAGGTTCAAGCACCCCGACCCGAGGGATTGAGAACATGGCGTTCGACCGAAATACAGAGTCTCTCTTTGAAGAAGTGTCTTCAGCAGGCACGGGTTTAATTGGAGACGTGGACGAAGGAGCGGATCTGCTGGTGGAGTACTCCGGCATGGGCCGCGAGGTGGAGAATCTCATTCAGGAGAACGTGCAGCTGCTCGAAACAAAAAATGCACTGAACGTGGTGAAGAACGACCTGATCGCTCGCGTGGACGAGCTCTCCTGCGAGAAGGAGGTTCTTCACGGCGAGCTGGATGCGGTTTTGCAGGCCAAAGCCAAACTGGAGGAGAGATACAAGGAGCTGGAGGATGAGCTCAAAAAAGTGAAAGCAGAGGCAGAGGTGGCCAAACAGAGCAATAATAAAGAGGAAGACGAGAGCGACGTGCCCACAGCTCAGAGGAGGAGGTTCACTCGGGTGGAGATGGCTCGGGTCCTGATGGAGCGAAACCAGTACAAGGAGAGACTGATGGAGCTGCAGGAGGCCGTCAGGTGGACAGAAATGATCCGAGCATCGAGGGAAAACTCTGAAGTTGCAGAGAAGAAGAGGTCAAGCATCAGGCAATTCTTCAGTCGCCTGTTCAGTTCCTCCAGTTCCTCAGCGTCCAGCAACACAGCGAGAGGGTTGCCGTCCAACGTCAAGTACAACCCACCCAGCATCATGAAAAAGAGCAACACCTTCTCCCAGTTCCCAAGAGAAAAGTCCAAAGCGTTCGACTTCCTCAAAGAAGAGGTGGACTCGAGCGGCTCTCTGTCGCGCCGGGAGCAGAAGCGCGCTCAGTACGAGCATGTGAAAGCCCACGTGCAGAAGGAGGACGGCAGGGTCACAGCACATGGCTGGAGTCTCCCTGGAAAATACAAGGTTGCTAATGGTGGCCacgcagaaaataaaataaacctccCTGTTCCTGTGTGTCTCAGGCCGCTGGAGCAGAAAGATGCTTCTATGAAGCTCTTGTGTGCGGCTGGAGTGAACCTGTCCGGTGGACGCTCGTGTGAGGGAAGCTCGGGCGCCTCTGGAGAAGAGTCTGCAGGCGAAACGGACGCCTCTAAACAGAGCAAAGGCTCCCAGAGCAGTCTCGATCAGCCGGAGCAGGAACCTAAGGAGCAGGAGCGGGAGCAGACGGTGCATGTGGAGATGTCCAGTCGTGTTTGGATCTGTACGAGCACACACTCCTCCACTAAGGTGATGATCATGGATGTGACGAGGCCCGACGACCTGCTGGACAGCTTCTACGTCTGTAACTCGTGTGTGCTGTGCATCGCCAGCGTACCAGGGGTCTTGGAGACGGACTATCCTGCAGGGGAGGAGATTCCTCAGGACCTGGAGGCGGGGCCGGACGCTCTACTGGCCAGCAGCAGCTCTCAGGGCAGCGAGGGAGCGTTGAGTGACGTGTCGGCGGTGGGCTGCAGCGTCGAAGAGTCCAGCACGGGGTCTCAGACGGGCAGCACAGGCGCCAACGAACAGTCAGCAGAGCACAGTCCAGCCAGAGCCAGTGATCTCTCCAGAGCTCCCAGCGAAGATGGGCTCCCTGCAGCAGAGGAGGCGATGGAGGCCACGGAGGAAGAGCAGGAGAGCCCGGGACAGGACACCAGCCAGCCAGGGATCTACACGGAGCACGTGTTTACAGACCCTCTGGGAACAGAGTCCTCCGGAGCTCCGGCGGGCAGCGACAGCCACAGGGAGTCTGTTCAGGACCGGGACGATAGGGCCTCAGCTAGTGGAAAGACGAATCTGGCAAAAGAAGAGAATCAGCGGATGAGCAGCGAGCTGCCCACCATGTGGCTGGGGGCGCAGAACGGctgTTTATACGTGCACTCGTCCGTGGCTCGATGGAGGAAGTGCCTCCACGCTGTCAAGCTGAAAGATTCCATCTTGAACATCGTACATGTGAAAGGCCGTGTTTTGGTGGCTCTGGCTGACGGTACACTGGCCATCTTTCACAGAGGTCTCGACAGCCAGTGGGATTTGACCAACTACCACCTCTTGGACCTTGGCCGGCCTCATCACTCGATCCGCTGCATGACCGTGGTGCACGACAAAGTGTGGTGCGGCTACAGAAACAGGATCTACGTCATTCAGCCCAAAGCGATGAAGATAGAGAAGTCTTTTGACGCCCACCCGCGTAAGGAGAGCCAGGTGCGTCAGCTGGCCTGGGTGGGGGACGGCATCTGGGTGTCCATCCGGCTCGACTCCACCCTCCGCCTCTTCCACGCTCACACCTTCCAGCACCTCCAGGACGTGGACATCGAACCTTATGTCAGCAAAATGTTGGGAACGGGAAAACTGGGCTTCTCTTTTGTGAGGATCACGGCTCTAATGGTTTCCTGTAACCGGCTGTGGGTGGGAACAGGAAATGGTGTCATCATCTCCATCCCTTTATCAGACTCAGCTCATAAGTCCGTGGGAGCGATCGCCTGCCGCCCGGGCGGGGCGGTGCGGGTGTACGGCGATGACCCGGTGGACGGGACGGTGACCGGCTCGTATGTGCCCTACTGCTCCATGGCACACGCTCAGCTCTGCTTCCACGGCCACAGAGACGCTGTTAAATTCTTCGCCACCGTTCCAGGTCAGGTTATTGTGCCCGGAGCTGAAGGTATGACTGAGAACTCGGACCCTTCAGCCCCGGACGGCAAGAGCATGCTCATCATGAGCGGAGGAGAGGGATACATCGACTTTAGGATCGgtgATGAGGATGGTGGTTTGGGTCGAGATGAAGATGACGAATCAGCCGAACCCACTCTGAAGCTGCAGTCGGCTCCTGCTAAACCCGAGCGCAGTTATGTTATAGTCTGGCAGGTCGCTGTAGGCAGTGAGGGATAAATCAGTGCTGGAGGAGCAGCGGAGAACTCTAGGTCAACCTCACACAAGCTTGTTATTTTACTACACGCTACTCTTCTTattaatgctattattattgttattattattaataatgttcttCTTACCTACATCACAATGAGTTCTAATATTCGTGACtagatgtttatttaatttattgttttataggAATCTGGCAATTGACAGAAAATAGAGATGAAATGAAGGGACAAAACGTTGACTTGAAGCCGTCCACAAGTAGATGAAACTCCTGCGCTAGAGGtcttagataaataaatgaagatttGTTACAAATGCACTCGCCCTCAGGCCATCGAAGACgtatagatgagtttgtttcttgatCAGAACAGATCTGGAAAAATGCTAGTTACTTcagtcctctgcagtgaatgggtgccgtcgcaacgagagtccaaaaagcggaaaaataaaaggtaaaaagcTGTGTGTAAGAAATAAGTCCATCATTAAAGGCCCGGTTTCATAGACGGGGCTTACCTTGAGCCAGGATTAGGCCGTAGTTCAGTTAGGACGTTTGAGTGAACATACGGtaagaaaaacaatacaaaacaaagtctcacaaacagctcagatttagaTGTCAGTCTGGGACAGGCTCAAGCCCTGCCTGCGAAACCAGGGGTAAAGAGTCTCAACTCTAAACCATTAAAGCTTCTGGTCAAAATATCCATACTTCCAATAAAAAAGTTGTGGATTATTATGGGCCCTTTCTTGTGTCGGAAGCAACCGTTTGAAGTTAAAGACGACTTAAATGATAGTTTATGCAGCTCTACGAGAGAGAGACTGGATTTAACAATGTTTCGATCGAATGCGTGGACTCtggttctgacggcacccattcactcacCGCAGAGGGGGTCCCAGCGACGCCATGCCGAACTTCGCCAAATccgttctgatgaagaaacgaacTCATCTCGGATGACCCCGGGGCCAGTGCGTCCTCACGACCAGTTTACAGAGGTTTCCTCTTTAGGTCAGCCGCTCGAgacggttttttttttgttcttcacagAGCCGATCGGAGGTTTCCCCGCGCGCTGTGGCGGCGGTAGCATCGTGTAGTTCATGTACATAGAAACTCAGAGAGCTATTTTTGCTATCCGTACGGCGTAGGGCCCGCGCGGCACGGTATGTGGCGCTCACACGGGTCCTGTATCGTTCCCGCACCGAACCCCCCGGAGCTCCAGGGATTCGGGCTTCCTTCGCGCTAGAGCTTTGCTGGCACTTTAAAAGACGACGAAGCTAACTTCTAGAAAGTACAACACGCGGTAGTGTTCACAGCAGCCGAGAAGAGCCAAAGGACGAAGCGCAGAACAGATAACCGGCGCTGAACGGCCTAGTTGTCCAATCTTTTGGCTTTTCGGTGTTCTGTGGTTCTCTCGAACGGATAATAacgttgaattaaaaaaaaaaaaagattaaaaaaagcgaCAGGGATTGTGTAATAAATGATTCGTATTCCTTGCGTCGGGTTTAGTTTGGTCTGCTTCAGCACTAAGCATCTCAGATAACTAACGTGGGTTTCGTCCGTGTCGTACGTCCCAGGCTTGGGTTCGAGTGTGTCGACTTTTCTAATTCTAATCAGAGAATCAGCTCCTTTTTGTATCCGGTCCGTAACGACACTTTTATTGTACCTCGATGTCCGTTAAAACAGATGCAAGgtgtttgactttttatgtgTAACCGGGGGGGAACGGGAAGTCGGGTTCGGGGCGCATTTCGTTTCCTTTTTCGATCCCGACACGATAAGGGAATCTTTACGTCATTGTCGTCGCCATTCcaagtatttattttcacaatgaaCTTTGCCGTTCAGAATGTAACTTTTTACACGTCTGCGAAGCAAGGCGACGTCGTTTAGTTTTACACCCGACACCTGTTAGAAGCGATCCGACTAATAGCGCTGACAGTATTAGGCCTCCGTGGGTCACGTTTATTGTATGAAgctatgcatgttttttttaaagtacacaCTGCAGTCTGTTCGTTCGACTTTGTTTATCGCCACCTTTTTGGGTGGTTTTGTGTATacgtgtgagtgtttgtgtgtggagaCGGGTGAGAAATATtagcgcgcgcgtgtgtgttgTCGCTGTTTCCCTTAAATCTTACTGGActggctgtgtgtgtgatacAGCTTGTCATTACTGTGTTTTTCTCGTCAGAAGTTTGCTAAAACTGCATCATAGCCTTATTTTTAAACTCTATTAAACTCAATTTCATGGGGAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34262 lncRNA upstream 7893 25445299 ~ 25447270 (+) False G23061
TU34285 lncRNA upstream 20615 25430474 ~ 25434548 (+) True G23069
TU34278 lncRNA upstream 23743 25430474 ~ 25431420 (+) False G23069
TU34317 lncRNA upstream 34033 25420272 ~ 25421130 (+) True G23096
TU34316 lncRNA upstream 35388 25418670 ~ 25419775 (+) True G23095
TU34333 lncRNA downstream 29770 25514214 ~ 25519748 (+) True G23106
TU34339 lncRNA downstream 39882 25524326 ~ 25569403 (+) False tob1a
TU34385 lncRNA downstream 128780 25613224 ~ 25615905 (+) True LOC122336634
TU34412 lncRNA downstream 146695 25631139 ~ 25767050 (+) True G23125
TU34419 lncRNA downstream 150180 25634624 ~ 25727704 (+) True G23127
XM_043233823.1 mRNA upstream 758 25450395 ~ 25454405 (+) True kdelr2a
XM_043233824.1 mRNA upstream 10617 25442610 ~ 25444546 (+) True ndufb10
XM_043234952.1 mRNA upstream 18013 25436163 ~ 25437150 (+) True fahd1
XM_043236009.1 mRNA upstream 25098 25423943 ~ 25430065 (+) True narfl
XM_043234957.1 mRNA downstream 39865 25524309 ~ 25528038 (+) True tob1a
XM_043229171.1 mRNA downstream 89313 25573757 ~ 25577014 (+) True LOC122331665
XM_043233723.1 mRNA downstream 102079 25586523 ~ 25604509 (+) True LOC122336725
XM_043233718.1 mRNA downstream 125036 25609480 ~ 25611691 (+) True LOC122336618
XM_043233719.1 mRNA downstream 128715 25613159 ~ 25615628 (+) False LOC122336634
TU34266 other upstream 7893 25411918 ~ 25447270 (+) False G23061
TU34263 other upstream 7893 25445299 ~ 25447270 (+) False G23061
TU34203 other upstream 469246 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 643586 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 645200 24721526 ~ 24809963 (+) False G23026
TU34364 other downstream 91532 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 128792 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 128830 25613274 ~ 25615293 (+) False LOC122336634
TU34365 other downstream 176604 25661048 ~ 25662317 (+) True G23121
TU34366 other downstream 176604 25661048 ~ 25662317 (+) False G23121

Expression Profile