RNA id: XM_043235020.1


Basic Information

Item Value
RNA id XM_043235020.1
length 3857
RNA type mRNA
GC content 0.59
exon number 16
gene id LOC122341566
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2357686 ~ 2370636 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGGATTGTCATATAACGCCGAGCGGAGTTCGTTTCGTCCCGAGCCGTCGCCGGAGCGCTGATTAACGGCGTAAGCGCTAATTTTAGCTCAAGCTAACAGCCAGGAGCGCCCGTGTGTCCGGGCTCGAGCAGAACCGGAGAGAGTCGGTCCGATGGCGGACCCGAGAAAAGTTCCGTTCGTCACGCTCGCCTCGTTCAGCAGCACGCCGGCGGCGCCAGAGTCAAAGAAGCGTCGGCGGGAGGACGAAGAGAATCAACCGAGTCCCGGGATCACCGGCGGCGGAGGGGGCTGTTCGGTACCGGGAAACCCATCGGACCCCGGCGAACCCAAACCCACCGTCCGCCTCAACCTGAGTCTCTCAGAACCGAGCGAGCAGAGATCCGCCGAGTTCAACTACAGCGAGATGGTCCAGTCCAACCTGCAGGTGAGGAAGGCTCCTCGGGGTCTCACTCCGGCTCTGGACCCCGCCGACCCGTTCGCAGATGAAGACAAAGAGCGGCAAGAAGTCGAGGCGCTCGCCAGGAAGTTTGAGAGCAAATACGGAGGCACCGTCAAGAAGAAGCGGCGGGACCGGATGCAGGATCTCATCGATATCGGTTACGGCTACGATGAAACTGATCCGTTTATCGACAACTCTGAGGcttacgATGAGCTGGTTCCTGCGTCTCTCACCACTAAACTGGGTGGTTTCTACATCAACACGGGTACGCTGCAGTTCAGGGCGGCGTCTGAGTCTGAGGGAGAGGACGGAGGAAAATACACCAACCACTTCAAGaaagatggagaggaGCGGGTGATCAAGAGAAGGAAGAAGAAGCAGGACGGTGGCCTGGAGGAGAAGAAACCCAGGAAGTTCAAAGTACCCAAACCAGGgGTTTCGGCTCTGAACCGGccggagaagaagaagaggaagaagctGATGAAGGACTCTCTGTCTCTGGCGGCCATGATTCGCCGCTTCAaccgagagaaagaggagatCCGCAAGAAGACCCCGGTCAAACTCGTGCGCGCTCCGCCGAACGCCGCCTCCGCCGCGGTCGCCCCCGGCAACGACCTGTCCATGGCCGACCTGACCTCTGACCCGGCGGTGATGTCGCTGCTGGGCGGAGCTACGGAGAACGACATGCTGCAGGAGCTGATGGGCGACCTGGACTTCGGGCTGCTGGACTCTCCGGGGCCGTCCAGTCCGGGGCAGGGCGAGAACGGACAGAAGGCGGGCGCCGTGGGGCGGGTGCAGAAGGCGGGGCTGGTGCCGCCCCCTCCTCTTCCCAGCAGCCTCCCCGCGCCGCTGCTGAAGCGCATCGAGGACCTGCGCGCCGCGTCTCGTCAGTTCGACATGGAGGGCAGGAAGAAGTTCTTCACGCTGGACATGAACAACATCCTGCTGGAcatcGAGCTGCAGGTTCAGGAGCAGCCTCCTCCGGTGCGCACCTCCATCTACTCTCACCTGGAGGCCTTCGTTCCTTGCAATAAAGAGGCTCTGCTGAAGCGTCTGAAGAAGCTGAGCCTGAACATCCAGGACGACCGTCTGCGCACGCCGCTGCACAAGCTGAAGCTGGCCGTCTGCAGCGTCATGCCCGAGCAGATCGCTCGATACAACATGGACTGCATGGCCAAAGTCGCCAAGCAGCATACGGAGGATGGTGATAGAAACGGCTcggaggatgatgatgaggagaaGCCAGGAAAAAGAGTGATGGGCCCCAGGAAGAAGTTTGTGTGGGACGACAAACTCAGGTCTCTGCTGTGTAATCTGGTGCAGGTGAAGCTGGGCTGCTACGAGCTGGAGGGTCACAGCTCCCTCTCCCCCGAAGACTACCTGAAGAGCTTCATGGAGACGGAGGTCAAACCTCTCTGGCCCAAAGGATGGATGCAGGCCAGGATGCTGTTCAAAGAGAGCCGCGTGGCTCACAGTCACCTCACGGGGAACACAGTGAAGAAAAGGGTGCTACCGACTCCGAAAGCCAAGCCCAAGCCTCAGGACGGCGGCGTGCTCCAGCGGCTGCCCGTGTCTGTGGACTCCGCCCAGCGCCCGGTGGACCCGGCTCCTCCTGCTTCTGTCCAGCGAGCGCTGTCCCCGCCAGAGCCCATCTGCCTGTCGGACTCTCTGGACGAGGACCTGGCGGCCCCGTCGCTCGACTCCATCTCTCACGCTCTGGCCATGTTGAGCAGCGTCGCCAAAGACCTGGCCCAGTCCAACAGCCCGCCGTGCGCCGAGCTGCCCAAAGCGCCCCAGTCGCTGCTCACGTCTCCACACCTGGTGAAAAAGAGCGCGAGCACCCCGCCTCCGCCTACAGCTCCGCCCGGCGTCCTCTCCTCCACGCCCTCGGCTCCGGTCGTTAAAAACGTGAGCGTCCTGTCCCAGGTTCAGAGACATTCCGTTATTCCAGCTCAGCGACCGTCCGTGGCTCCGCCTGCTAAGATGGGCGTGTCTCCGGCGAAGCCCCGCCCTCCCGCGACGGCGTCGCCTCTTCACGCCCCTCAGAAGATCGTGGCGGGGAAAACGGTGGTCGCCATGCCTACAGGCCTCATCAAAACCAGCAATAACAGCTCTGCGCGCACGCTTCCCGCCACTTCCTCGTCGTCGCATTTAAACGTAAAATCGCCGCAGTGTTTCCACGTGACGCCGCAAGCCAAAAACCACGAGTCGCCCAAACCGGGCTTCATCACGCCCATGCAGGCCACTCTCACCAAGTCTCCCCACAACCCCAGCTCGCCCATCATCAAGCTCACGCCCACCGCCTCGCCCGTCGTTTCCAGGACGCCCACGTTACCCAGCATGCACCAGCACGCCTCCAAGAGCCCGGGCTTCCACGCGGGGTTCGTCGCCGGCGGTTACAGCACCCCCGTGGTGCAGAAGAGTTCATCTCAGGGCAACAGCATCTCTGGACTCGCCACGACGACCGCGTCTGTCGCCAAGCAACCGGCCTCCAGCGCATCGCCGGTGGCGGCCAATCACAGTCAGCGACACAGACAAGTGGGTGGAGCTAATCAGGGAGTGAAAACGATCACGTCTGTGTCTACAGCCACAGCGTCTCCACTCTCACAGGTGTCCTCCTCCAGTGCTCTGCTGGGCTCGGCCGGTCCGTCTCTGCCGCTGGGCTTCGGGATGCTGGGAGGCCTGGTTCCCGTCTCTCTCCCGTTCCAGTTTCCAAACCTGCTGAATCTTCCTTCCTCTGTGGTTTCCACGGCGACCAGCGGTGGCTCGACCAATCCCAGCAGCTCAGGGTTTAACCTTCCCCAGAATGTGTTAAAGGGTCTCATGTCAGGGGCTCAGGCCGCTCTGCCGCCACACTTACAGCTGGCTTTCTCAGATGTCAATCAAACGCAGGGCGGAGACTTGAAGAGGAAGACCTTATGACGTCACAGAGCTCTTATCCGGGACTGACTCCACCCATTTTTATGCATGAAGCGCTGGCCGTCCAATGAGACGGGGCCATTTTTATACGCAATTTGAATATTGATGCTGATGATTAATGTTATTAGTTTGAATGATGATCCGTGGGTTGTACATATGTATCAATGTTTACACAGACGGACCTGATCACTGTGACGGGGAgggaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcatgtcGATTAGCGCGCAGCTTCTGTACATGAGGATGTTTTTTAACGTGTGGATGAGTGAAGGTGTTCCTCCCTCTCTGGTGTGGGTCGGTGTCTCCGGTGCTGTTCACCAACGAAACGCCCCTTTAAATTGTTCAAACCAAATGACGAAGGGCGGGACGGCGGCCATTGTAATATACTTGAACTTTCAGGATTTGTTTACTTGCGTTTCAGGACacgagcaaaataaaaatgcagaagcCTTAGTGAAAA

Function

GO: NA

KEGG:

id description
K17492 UBN; ubinuclein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24241 lncRNA upstream 1615 2296867 ~ 2356071 (+) True G16310
TU24239 lncRNA upstream 1756 2296867 ~ 2355930 (+) False G16310
TU24127 lncRNA upstream 37548 2024348 ~ 2320138 (+) False G16222
TU24270 lncRNA downstream 55772 2426408 ~ 2429562 (+) True G16327
TU24271 lncRNA downstream 55772 2426408 ~ 2434512 (+) False G16327
TU24283 lncRNA downstream 145876 2516512 ~ 2546903 (+) True G16337
TU24291 lncRNA downstream 193852 2564488 ~ 2565843 (+) True G16344
TU24312 lncRNA downstream 231202 2601838 ~ 2602340 (+) False G16358
XM_043235064.1 mRNA upstream 7997 2341531 ~ 2349689 (+) True LOC122341598
XM_043235022.1 mRNA upstream 17593 2323700 ~ 2340093 (+) True LOC122341568
XM_043230952.1 mRNA upstream 61641 2293303 ~ 2296045 (+) True LOC122333376
XM_043235186.1 mRNA upstream 87222 2267588 ~ 2270464 (+) True LOC122341669
XM_043235185.1 mRNA upstream 90178 2261610 ~ 2267508 (+) True LOC122341668
XM_043235048.1 mRNA downstream 51435 2422071 ~ 2423550 (+) True junbb
XM_043235017.1 mRNA downstream 78839 2449475 ~ 2474998 (+) True mast1b
XM_043235060.1 mRNA downstream 127347 2497983 ~ 2501016 (+) True LOC122341595
XM_043235039.1 mRNA downstream 130952 2501588 ~ 2509106 (+) True atg4db
XM_043235015.1 mRNA downstream 142585 2513221 ~ 2542538 (+) True evplb
TU24191 other upstream 192072 2160845 ~ 2165614 (+) False LOC122333054
TU24133 other upstream 243347 2112037 ~ 2114339 (+) True G16223
TU24128 other upstream 293902 2056681 ~ 2063784 (+) False G16222
XR_006250539.1 other downstream 194251 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 197448 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 270576 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 270576 2641212 ~ 2646750 (+) False sumo2b
TU24591 other downstream 912354 3282990 ~ 3283656 (+) True G16530

Expression Profile