RNA id: XM_043235022.1


Basic Information

Item Value
RNA id XM_043235022.1
length 4166
RNA type mRNA
GC content 0.50
exon number 22
gene id LOC122341568
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2323700 ~ 2340093 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agTCGTCTCTTGTGTGTCATGTAGAGATTAACAGGAAGCTGTTGCTGTGGCTCTCTGTGAGCGGAAGCCATCGCAGTACGTGGTGTCAGTGCCTCTAAAAACAGACAGAAGCGTGTTTGATCTGAGAGGAGAGGAGCTGATGGACAGTGAAGGAGACGCTGGAGATTGTTCGCTGGAGGAGTTTCCCTCGAGCCCAGCGGAGGCCGAGCATGTGGATTCGGATGGTTTTTCCGTCCTGGAGCAGCTGGGACTGGACCAGAACTCAGATTTGTCAGACTCCTGCGTGCAGCAGCGGTTGGACGAGCAGCGAGAGAAGATCCGGAGGGAGATCCGTAAGGAGCTGAAGATAAAAGCGGGCGCGGAGAACCTGCGACGGGCCACCACCGACAAACGCAACGCCCAGCAGGTGGAGAGCCAGTTACGCAGCTCCAGCCGCAAACTAGACACGCTCCACGCTCAACTGCAAGAGCTGGATGCCCACATCGTGGTCAAGGGTCACGACGACAGCAAAGATGACCTTCAGTCTCTCGGGACGCCAGGTCGCTCCTCAGCCAATCAGGACAGGATTAAAGCTCTGGAGCGACAGCTCAACATTGAACTCAAGGTCAAACAGGGGGCAGAGAACATGATCCCCATCTACGCCAATGGGGTTACCAAGGATAAAAAGCTGCTCCAGTCAGCTCAGCAGATGCTGCAGGACAGTAAAACGAAGATCGACATCATCCGTATGCAGATTCGTAAAGCCATGCAGGCCACCGAACAGACAGAAGACACTCAGGgtAAGCCGGATCTGTGTGGGGTGGAGCTCCGTATCGAGGAGCTCTGGCATCATTACCGTGTTGAACATGCCATGGCCGAGGGCGCCAAAAACATGCTGAGGCTTCTGGGAGCTGGAAAAGCACAGGACAAGAAGGCCATTGCTGAGGCTCAGTCTCGCCTCAGCGAAGCGTCCCAGCGCCTAGATCTTCTGCGGGTGTCGTTAGAGCAGCGTTTGGTCAGTCTGCCGGAAGACCATCCCAAAGTGTGTCTGATCAAGGAGGAGTTAGTGCTGGCCTCGTCGTCGGCCTTCAGCTCTCGTCACAGCGCCCCCTATGTCCACAATCAGTACAGCACCCTCAGCAAACCGTCGCCGCTCACCGGGACGCTGCAGGTGCGTCTGCTGGGGTGCGTGGGCTTGCTGGAGGTGGTCCCGGGCCGCAGTCGCACCTCTCCGCTGGTCTTACCTCACAGTCCCGGGGACGGACGGCCCTTCAAGCTCACTCTGAGCAGCAGAAACAGCAGCTTCAGCCTGAAGATTCCCAGCAAGAGCGAAGAGCTGTCCTCGGAGGTGAGCGCCGTGTTGAAGCTGGAGAACTGTGTGGTGGGACAGACGTGCTGGAAGAGTGTGGGGGAACAGACCTGGGATCAGACCTTCACTCTGGAGCTGGAGAGATCCAGAGAGATGGAGATCGCCGTGTACTGGAGAGATTATCGATCTCTGTGTGCCCTGAAATTTCTCAAGTTGGAGGATTTCCTGGACAACCAGAAACACAGAGTGCAGCTGGAGCTGGAGCCGCAGGGGCTGCTGCTGGCGGagGTTACTTTCTTCAACCCCGTGATCGAGAGAGCTCCGCGGCTAAAACGACAGAAGAAAGTTTTCTCCAAACAGCAGGGAAAAGCGTTCTTGCGAGCTCGGCAGATGAACGTCGATATCGGCACATGGGTGAGGCTATTGAGGAATGCCATACCAACCGTCAATAACACAGGAACCTACAGCCCTCACGCACACACAGTACAGACAGgGGAGATATCAGTGGAGAAGTTGAGTTTAGACTATGACTCGCCGATGAAGGTGGACATTCGTCGAGATGTGCCGGATACAAGCACTCCAGAGCGTCAACCCGCCACTGATCCAGTCTCCGCCCCGGACGTCACCACACCTGAACGCCAAATCAGAACACATTCACTGAGCAGcaaaCAGAAGAAGACTCCTTTGAGCCTGCAGGACTTCCGACTAATAGCTGTTCTTGGCAGAGGCCATTTTGGAAAGGTGCTTTTGGCGGAATACAAGAAGTCAGGTAATATGTACGCCATTAAAGNNATGACATTTTTCtcgtttctctctcttttctccctTAGTTTGATGTGCGAGAAGCGTATTTTCGAGACGGTGAACAGTACGCAGCACCCCTTCCTCGTGAACCTGTTTGCGTGTTTCCAGACCCCAGAAcatgtgtgttttgtcatgGAGTACACGGCAGGCGGCGATCTGATGATGCACATACACGCAGACGTCTTCACCGAGCCCCGGGCTGTgttctATGCCGCTTGTGTAGTTTTAGGGCTTCAGTTTTTACACGATAACAAGATTGTGTACCGAGATCTTAAATTGGACAACTTGCTGCTTGACACAGAGGGTTACGTGAAGATTGCAGACTTTGGGTTGTGTAAAGAAGGTATGGGTTTCGGGGACCGGACCAGTACGTTCTGTGGGACTCCCGAGTTCCTGGCTCCAGAGGTCTTAACAGACACGTCGTACACACGGGCCGTGGACTGGTGGGGACTCGGAGTGCTTATATACGAGATGTTAGTGGGAGAGTCTCCGTTTCCAggtgatgatgaagaggaggttTTTGACAGCATAGTGAATGATGAAGTTCGTTATCCACGGTTTCTTTCCTCGGAGGCCATTGGCATCATGAGGAGGTTGCTAAGGAGAAACCCAGAAAGACGTCTGGGTTCCAGTGAGAAAGACGCAGAGGATGTAAAGAAACAGCCTTTCTTCAGGAATATGGACTGGGAGGCTCTTCTCCTCCGTAAACTCCCTCCTCCCTTCCTTCCGACTATCGGGAACAAAGAGGACGTCAGCAACTTCGATGAGGAATTCACAACAGAAGCTCCGGCTCTCACACCGCCCCGTGAACCCCGGGTGCTCTCGCGCAAGGACCAGGACAGCTTCCGGGACTTTGACTATGTGTCCGACCTCTGCTGAGAGCGCCCTTCGCTGTGATAGTGCTGTAGAGAGACCTTTCTGCTCCGTCACTCAGCCACGACGAGGTCAAGAGCGGCCAATCCGAGTGTTTCGCCTCAATTATGAATGTGCTGGACCTGAGAACACTGTGATGGAAAAAACAGAGGAGTCCGAAAACAGTTAGAACCGGGTTAAAGACAGAAATCTTTTCCGCCAGCAGGTTTAAAGGtgcatttgatcattttatttttttatagcgCTTCAGCTCAGACTGACACCTAGTGGATTGGATGAAGCATCACACTAAAGTGGTCAGGTACTGATACCATGGTAGAAAAGCATTATTCACAGTTAGccatgattcatttattcaacTAGTCACGTGTGTTACTGAAACAGCTGGGTAGCATTCACCCGGTCACGTGATCTCAAAATAGCCTCTTCATGCAGAATAATACAGGCTACTTATATGAATAGAGGCTTCATCCCACATGAACTTTATTTAGAAGTGCTATTTATTGCGTTAGGCATAACGCATGTtttaacaaagagaaaaaatggTCGAGTGCACCGATAAACTTGCTGAAATTTTTGGCTTGTCTTCTACTTTTGAAAAATGCGCCTTTGTCTTAGTAAAGGTAACGTGAAGGTCATTTTTTAAACTCGAAGCAAATCAATAAAGGTCGCACTGAAGCATCTCGGTGAACTTTTGCAAGCGATACGACCaagagcatgctgggaaatgcatttctgttcaGTCTCACATTTAGGAACTGGTAACCACTGCAAAATCTTCCTTCCATTTCTCGTATCATGTCCAGTCAAACGGGACGATGCTGTCTGAATTATTTGCCATTCTCTAAGGAACTAGATTAAGAGACACTTTTCTGCAGACACCGTGGCATTTGATGGAAAAAGAGAGTTGTTTAATTAGGCTTGAATATTAATGAACGTGTACTTGGAGCTAAAGACCTCTTTAGACTCGTTCATCCTGGGTGTTTTCTCATACTTCAAGCCCATCGTCTCTTACGTGTTACTTGTGAAAGTGAAGCATATTGAAGTAGGACAGCTTGTTCTCCATTCATTAAGTGCACTTTAAGTATGGTCACCTTAATGAAtttttacaaaagcaaacaaacaaccTTGTATATAAAGCTGGTCTGAAGAAAAAATGCCTTAAAATATCGTTCCTTTCCGCCCTACCGTTGGCGTTTTT

Function

GO: NA

KEGG:

id description
K06071 PKN1; serine/threonine-protein kinase N1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24127 lncRNA upstream 3562 2024348 ~ 2320138 (+) False G16222
TU24129 lncRNA upstream 3562 2056681 ~ 2320138 (+) False G16222
TU24158 lncRNA upstream 21572 2242286 ~ 2302128 (+) True G16240
TU24227 lncRNA upstream 69045 2253829 ~ 2254655 (+) True LOC122341670
XR_006250483.1 lncRNA upstream 69229 2253835 ~ 2254471 (+) False LOC122341670
TU24270 lncRNA downstream 86315 2426408 ~ 2429562 (+) True G16327
TU24271 lncRNA downstream 86315 2426408 ~ 2434512 (+) False G16327
TU24283 lncRNA downstream 176419 2516512 ~ 2546903 (+) True G16337
TU24291 lncRNA downstream 224395 2564488 ~ 2565843 (+) True G16344
TU24312 lncRNA downstream 261745 2601838 ~ 2602340 (+) False G16358
XM_043230952.1 mRNA upstream 27655 2293303 ~ 2296045 (+) True LOC122333376
XM_043235186.1 mRNA upstream 53236 2267588 ~ 2270464 (+) True LOC122341669
XM_043235185.1 mRNA upstream 56192 2261610 ~ 2267508 (+) True LOC122341668
XM_043230556.1 mRNA upstream 158007 2160346 ~ 2165693 (+) True LOC122333054
XM_043235918.1 mRNA upstream 182879 2131218 ~ 2140821 (+) True si:ch211-106h11.3
XM_043235064.1 mRNA downstream 1438 2341531 ~ 2349689 (+) True LOC122341598
XM_043235031.1 mRNA downstream 9682 2349775 ~ 2691512 (+) True LOC122341572
XM_043235020.1 mRNA downstream 17593 2357686 ~ 2370636 (+) True LOC122341566
XM_043235048.1 mRNA downstream 81978 2422071 ~ 2423550 (+) True junbb
XM_043235017.1 mRNA downstream 109382 2449475 ~ 2474998 (+) True mast1b
TU24191 other upstream 158086 2160845 ~ 2165614 (+) False LOC122333054
TU24133 other upstream 209361 2112037 ~ 2114339 (+) True G16223
TU24128 other upstream 259916 2056681 ~ 2063784 (+) False G16222
XR_006250539.1 other downstream 224794 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 227991 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 301119 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 301119 2641212 ~ 2646750 (+) False sumo2b
TU24591 other downstream 942897 3282990 ~ 3283656 (+) True G16530

Expression Profile