RNA id: XM_043235039.1


Basic Information

Item Value
RNA id XM_043235039.1
length 2208
RNA type mRNA
GC content 0.53
exon number 12
gene id atg4db
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2501588 ~ 2509106 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCGGAGTTAAAGCCAGGCAGCGACATCTATTCGGTGGCGTCGCGGTGTGTTTGTACTGCGCAAAGTTTCCAGCCAAATATTGCCATATTCACAATGACATGACAGTTAGAGCACCCTTTAAGCTTCTCTGGCAGTCCAGAAGAGTCACAGCGGCTCGCTTCCCTTCTCTGATTGGACAGCGGGGATTCATCGCCATGGCAaccgtatcctgatcatcccATCATGGATGTGAGTGATGAGCGTGACGGCGCGACGGAGGCCGCAGATGACCTCGCGTCGTTTGAGGTGGTCAACCTGTCGAACCCGGGCCCGCGGGATCTGGGCTCAGACGTCGACGGACGCCTCCAGGAGCCAAAGGACAAGACCAAACTCAAAACCAAACTCATTTCAGCGTGGAACAACGTCAAATATGGAGGCTGGTCTCTGAAGAGCAagcgtgtgtgtctgctgggaCAGTGCTATCAGCTGAGCTACAGTGgAGAGCGGGAGAGCTTCCGGCGGGCgttctcctctcttctctggatGACCTACAGGAGAGGTTTCCCGCCGCTGGACGGCACGGTCCTCACGTCTGACGCGGGATGGGGCTGCATGCTCCGCAGCGCACAGATGCTGTTAGCTCACGGGCTGATGCTGCACACGATGCCCGCGGGCTGGACGTGGCCTGCGGCGCACCATCAGACCAAAGACGACCTGGAGGTGCTGGACGCTCACATGCTGGAGGACTCCTTCAGAGAGGGCAAGGCTCGCAGATGCAGCCTGGGAACGGCTCTGGACTGCCCTGCTCAGGAGGAGCGCTCTCACAGGAGGGTGGTGTCCTGGTTCGGTGACCTGTCCTCCGCTCCGTTCGGTCTGCACCGGCTGGTGGAGCTGGGCAGGGCCTCGGGGAAGAGAGCGGGCGACTGGTACGGACCGGCCATCGCTGCTCACATACTGCAGAAGGCCGTGGCAGCGTCCGAGGTGTCCGATCTGGCGGTGTACGTGGCACAGAACTGCACAGTGTATGTGGGAGACGTGTTGGACCTGTGCGGGACGCCCCGTACCGACCTCTCCGCGAGGCGCAGGTCCGGCTGGAGGTCGCTGGTTCTGCTGGTGCCTGTGCGTTTGGGCTCGGATGTGTTGAATCGGGCCTACACCGGGTGTGTGAAGAGGCTGCTGGAGCTGCGGTGCTGCGTGGGGATCATCGGAGGGAAACCCAAACACTCGCTGTTTTTCGTGGGATTCCAGGGCGATCAGCTGATTTATTTGGATCCTCATTACTGTCAGGCCGCTGTTGATGTCCAGCAAGACAACTTCCCTTTAGAGTCGTTCCACTGTAAAACGGTCAGGAAGATGCCGTTTAGCCGCATGGACCCGAGCTGCGCCGTGGGTTTCTACGCCGGAAGCAGAGAGGACTTCCAGGCTCTGTGTTCAGACGTCACCAAGGCTCTGACGTCATCCGAGGAGAAGTACCCCATCTTCACGTTTGTGGAGGGTCGCAGCGAGGAGGAAATGAGCTTCACGTCAGACTCGGCCGCTCGTGTACAAAAAATAGATGGACCGGGCCGAACCAAAAACAAGAGCAGTTTGGAGGAGTTTGTGCTCTTGTGACTTCCTCCAGTTACAGTCATCTGATCATGAATGTAGGTGCTGTTGCTCTTTGTGGGTCTTTTTTAAAGACGgctgctgttgttttcttgtcTGTGTGTAAGGAGAACGCGAGGAGCTCGCTGAGCAGGTGGCTAAGCATATTACATGCGTCTGGTGTGACGCTAATGACAGCAGACAGGACAGATGAGAGGCGCAGACGTTACTCTTTGACAGGCTAACATGGGATTAGGCTGCTGTTAACACTGTGATTTAGTCGCCGTTTATCCGTTTGGCTGTTCGGACTGTTATATAAATggagagcttttattttgatgttaatgTTTCGTAGATAAAGCAAAAAGTGTACCGTCACACACATTTCTATCCAAGTTCTTATGACGTACGCTTCCATTACCAGTACTTTTGAGGTGTTTAATTtcctgtttttcagtgttttgttttttggaagtATTGACgttttttttagatgtatgATGACCAATAAAACTTTTCTGGTTAGGCAACATATCCGCTGTTTACACACGCGATTACTGACAATCAATATCAATTtcttttatgaatattaattccTTAATGGtcttattataaatatgcaaataaagtttatttgtttttta

Function

GO: NA

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24271 lncRNA upstream 67076 2426408 ~ 2434512 (+) False G16327
TU24270 lncRNA upstream 72026 2426408 ~ 2429562 (+) True G16327
TU24142 lncRNA upstream 127510 2314300 ~ 2374078 (+) True G16227
TU24241 lncRNA upstream 145517 2296867 ~ 2356071 (+) True G16310
TU24239 lncRNA upstream 145658 2296867 ~ 2355930 (+) False G16310
TU24283 lncRNA downstream 7406 2516512 ~ 2546903 (+) True G16337
TU24291 lncRNA downstream 55382 2564488 ~ 2565843 (+) True G16344
TU24312 lncRNA downstream 92732 2601838 ~ 2602340 (+) False G16358
TU24311 lncRNA downstream 93088 2602194 ~ 2602537 (+) True G16358
TU24310 lncRNA downstream 122689 2631795 ~ 2634380 (+) True G16357
XM_043235060.1 mRNA upstream 572 2497983 ~ 2501016 (+) True LOC122341595
XM_043235017.1 mRNA upstream 26590 2449475 ~ 2474998 (+) True mast1b
XM_043235048.1 mRNA upstream 78038 2422071 ~ 2423550 (+) True junbb
XM_043235020.1 mRNA upstream 130952 2357686 ~ 2370636 (+) True LOC122341566
XM_043235064.1 mRNA upstream 151899 2341531 ~ 2349689 (+) True LOC122341598
XM_043235015.1 mRNA downstream 4115 2513221 ~ 2542538 (+) True evplb
XM_043235016.1 mRNA downstream 4115 2513221 ~ 2542538 (+) False evplb
XM_043231017.1 mRNA downstream 70436 2579542 ~ 2584978 (+) True LOC122333418
XM_043235018.1 mRNA downstream 100133 2609239 ~ 2615973 (+) True LOC122341564
XM_043235025.1 mRNA downstream 108166 2617272 ~ 2627120 (+) True gga3b
TU24191 other upstream 335974 2160845 ~ 2165614 (+) False LOC122333054
TU24133 other upstream 387249 2112037 ~ 2114339 (+) True G16223
TU24128 other upstream 437804 2056681 ~ 2063784 (+) False G16222
XR_006250539.1 other downstream 55781 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 58978 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 132106 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 132106 2641212 ~ 2646750 (+) False sumo2b
TU24591 other downstream 773884 3282990 ~ 3283656 (+) True G16530

Expression Profile