RNA id: XM_043235048.1


Basic Information

Item Value
RNA id XM_043235048.1
length 1480
RNA type mRNA
GC content 0.59
exon number 1
gene id junbb
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2422071 ~ 2423550 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATTCCGATCCACGCGAACAAGCGCAACAGAGCGAATCAAACGAGCATCGTTCCCAAAGAGCGTTCCCTCGCAACATCGCGCTATTCCTTGGGACGCCTTCGAGAGGAGCATCGAAGCAGAGTTTCGTCTTTTATCTCACGCTCGAACCCCAGAAGAACTCTATGAGCACGAAAATGGAGCAGCCGTTCTACCACGACGACTCGTTTCTGTTGGGTTACGGCCACAGCGACGCGGCACTGCACGACTACAAACTCCAGAAAGCGGGCATGAACTTGAACCTGACCGAGCCCTATCGGAACCTCAAATCGGATCTGTATCAGACCGGCGGCGTCGATATGGGCTCGCTCAAGCTGGCCTCGCCGGAGCTGGAGAGGCTCATCATCCAGAACAGCAACGGGGTGCTGACGACGCCCACCCCGGGCCAGTACCTCTACGGCCGGGGCATCACCGACGAGCAGGAGGGCTTCGCGGAGGGCTTCGTCAAGGCTCTGGACGATCTCCACAAGATGAACCAGATGCCCCCGCCCAACGTGTCGATTGGAGCCGGCGGCGTGACGACGTGCTCGACGACCGCGTCCGTCTTTGGCTCCTCCCTGCAGTCTGAGCCTCCCATTTACACGACGCTGAACGCGTACTGCCCGGCAGCGCCCAGCCACCCGTCCGCCACCATCAGCTACCTGCCGCCGCAGAGCCAGCACCCGGAACCCGCGCAGGCGTTCCAGCACTCCGGCGTCCTCCCGCAGCGCTTCGCGAACTTGAAAGAGGAGCCCCAGACCGTTCCCGACATGCACAGCAGCGACGGCTCGCCGCCCATGTCTCCGATCGACATGGAGAGCCAGGAGCGCATCAAGGCGGAGCGCAAGAGGCTCCGGAACCGACTGGCGGCCACCAAGTGCCGGCGGCGCAAGCTCGAGCGCATCGCGCGGCTGGAGGAGAAGGTCAAGGTGCTCAAGTCCGACAACGCCGGGCTGTCCAACACGGCCTCCGTGCTGCGGGACCAGGTGGCCCAGCTCAAACAGAAGGTCCTGAGGCACATGAACAGCGGCTGTCAGCTGATGTTGACCAGCAAGATGGAAGCGTTTTAAGCGCGCTCGGACCCTTACGCGGATGCAACACTGGAAATCGTTTGTGTTCCTCGGCCGAACGGAAGCCGAGAGCCTTCGGACGCGTTCTGGGTTCCGAATAAAACGAACGGAGCGTGACGGAACGGACTCCGAGCCCCCCGGAGACGGACGGGGGTCACGGGCGAAGCGGGAAGGCCGGTCTCGGTatcaacaatgtgtttttttcgtCATGATCAACTGCATTTGATCACGAGAACGCATCTGATATTGTCGTGCAGTTCCAGAACTCATAACTTATTGTACTGATCGGGTTGATCCCGACGCCGTGTGTTAACGATGTCACATGTTTACAAtgtctctctttatttttttatgtgtgcgatttgtttatttaagtaAAGGTTTTGAAATACGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031101 fin regeneration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09028 JUNB; transcription factor jun-B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24142 lncRNA upstream 47993 2314300 ~ 2374078 (+) True G16227
TU24241 lncRNA upstream 66000 2296867 ~ 2356071 (+) True G16310
TU24239 lncRNA upstream 66141 2296867 ~ 2355930 (+) False G16310
TU24227 lncRNA upstream 167416 2253829 ~ 2254655 (+) True LOC122341670
XR_006250483.1 lncRNA upstream 167600 2253835 ~ 2254471 (+) False LOC122341670
TU24270 lncRNA downstream 2858 2426408 ~ 2429562 (+) True G16327
TU24271 lncRNA downstream 2858 2426408 ~ 2434512 (+) False G16327
TU24283 lncRNA downstream 92962 2516512 ~ 2546903 (+) True G16337
TU24291 lncRNA downstream 140938 2564488 ~ 2565843 (+) True G16344
TU24312 lncRNA downstream 178288 2601838 ~ 2602340 (+) False G16358
XM_043235020.1 mRNA upstream 51435 2357686 ~ 2370636 (+) True LOC122341566
XM_043235064.1 mRNA upstream 72382 2341531 ~ 2349689 (+) True LOC122341598
XM_043235022.1 mRNA upstream 81978 2323700 ~ 2340093 (+) True LOC122341568
XM_043230952.1 mRNA upstream 126026 2293303 ~ 2296045 (+) True LOC122333376
XM_043235186.1 mRNA upstream 151607 2267588 ~ 2270464 (+) True LOC122341669
XM_043235017.1 mRNA downstream 25925 2449475 ~ 2474998 (+) True mast1b
XM_043235060.1 mRNA downstream 74433 2497983 ~ 2501016 (+) True LOC122341595
XM_043235039.1 mRNA downstream 78038 2501588 ~ 2509106 (+) True atg4db
XM_043235015.1 mRNA downstream 89671 2513221 ~ 2542538 (+) True evplb
XM_043235016.1 mRNA downstream 89671 2513221 ~ 2542538 (+) False evplb
TU24191 other upstream 256457 2160845 ~ 2165614 (+) False LOC122333054
TU24133 other upstream 307732 2112037 ~ 2114339 (+) True G16223
TU24128 other upstream 358287 2056681 ~ 2063784 (+) False G16222
XR_006250539.1 other downstream 141337 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 144534 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 217662 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 217662 2641212 ~ 2646750 (+) False sumo2b
TU24591 other downstream 859440 3282990 ~ 3283656 (+) True G16530

Expression Profile