RNA id: XM_043235064.1


Basic Information

Item Value
RNA id XM_043235064.1
length 2484
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC122341598
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2341531 ~ 2349689 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAGCTGTTGAGTGTCTGTCTCTCCGTGTAAAATGGCAGAAGCCAGAATTTCTCAGGATGAGTTCTTGTGTGCAGTGTGTCTGGATCTCCTGAAGGATCCAGTGACTACTTCCTGTGGACACAGTTACTGTAAGAGCTGTATTACAGACTGCTGGGATCAAGAGGATCAGAAGAGAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTCAGTCCAAGACCTGCTTTAGCTAGAAACACCATGCTGGCTGAAGTGGTGGAGAAACTGAAGAAGACCAAACTCTCTGATGACTGTTACGCCGGAGATGGAGATGTTCAGTGTGACGTCTGTACTGGAAGAAAATACAGAGCCGTCAAGTCCTGTCTGGTGTGTCTGAACTCTTACTGTCAGAATCACCTCGAGCAACGAGGTTGGAAGAAACACAATCTGACCGAAGCCACTGGACAACTGCAGGAGATGATCTGCCAGAAACATCAGAAGATCCTTGAGGTTTTCTGTCGCACTGATCAGAAGTGTATATGTGGGCTGTGTAGGATGGGTGAACATAAAAACCACGACACTGTATCAGCTGCAGACCAGAGGACAGAGAAACAGAAAGAGTTAGAAGCGACAGAGATGTCGTGTCAAAAGCTGATccaggagcgagagagaggtcACCGGGAACTCAGAGAAGCTGTGAAGCTGCTTACAAGTTCAGCGCTAGAGACCATGGAGGACGTCGAGAAGGTCTTCACCGAGCTCATCTGCTCTCTGGAGAAGAAACGCTCTGAAATTAAAGAGCAGATCAGAGTTCAGGAGAAGGCTGAGATCGATCGAGCAGAGGAACTTCACGAACATCTGGATCAAGAGCTGGCAGAACTcagaagaagacaaaaaaagatcAAGGAGCTTCTGACTAGTGATGACCCAATCCAGAATCTGAAGAGCTgccagtctgtgtgtgttttacccaCCTTTGAAGGCGGCATCACTCAACACACTCACctgttttttaaagacatttcagTCACAATGTTTAAGGAGGTTTTGGAGGACGTGTGTCAACAGCAAACTGCCAGAATATTCAGAGAAGtgtcaaatgtcTATGTCACAAACCCTCCAGAGCCAAAGACCGTGCATGATTTTTTGCAATACATCTGCGAGCTTCACTTGGATCTAAACACTGCGCACAGAAACATCAAACTGTCGCAAGACAACAGGAAAATATCATCTACTTTAAAGGCTCAGCAATATCCAGATCAACCAGAGCGGTTTAATGAGCGTCCCTATGTCTTGTCTAGAGACGGTTTGTCTGGTCGCTTTTACTGGGAGGTCAAATGCACAGGGAACGAATGGGCTGTTGGAGTTTGTTACAAAGGAATCAGGCGTAAAGGAAGCACTCTCGACTGCATACTTGGCTTCAACAAAATGTCGTGGAGACTGGGTTATTTTCTGCAGGAATTCGGTTTTTATCACGCTCAACAAAAAGTCCCGGTCCCTGTCGCCTCTAGAATAGGAGTGTATCTGGATCACAGAGCAGGGACTCTGGccttcttcagcgtctctgaTACAATGACTCTCCTTCACAGAGTCCAGACCACTTTCACCGAACCCTTATACCCTGCGTTTAAGGTAGGAGCCGGTTCATCTGCCAGGATCATAGAGCTGAAAAAAGACCAGTTTTGCACTGCGGACGAAAGCTTGTATGCGGACACAACTTTTCTTTACGAACGCATGAGATTTTTTCTTCAAGGGACTTCCTAGTGAAATGAAAATAGCATGATAACAGTAAAAAGTTTGCAATATGAAGCAGGCTAATTTTGTACAAGCTAAGTAAATGGAGCACCAGAAGCCAAGCGCATTTAAgttagaaatgtaataaaataaataaaataggaaaaggtggataaaaaaacaacaccaacaaAGAAATGTATAACGTAATTTAACTgatctaattaaaaaatgcGAAAGGTCATGCAGGGTACCGCTTTTCCTACATTAAatctcttttaataataaaagtttattgTTATTGGTTATGCTAAATCATTAATCATGATGGAAATCAGTATTTGTtagataagtttttttttttttttttaaataacaatgattGGTTTCAGATTTGTgttaataaatttcattttaaatacaaggTTTGTATACAAATAAtggattttgatttaaatgacgAAATGTGATTTTTGGAATTAATGTGCCCATAATTTTGcttgcatttttatcatttagtttttatatcattacaatcatttctttacattttaaacattttaatcattttttattttttcattatttatcacaACATGGAGGTCAGTTCATTTGGACCTCAGCTCATAGTCTCTCTATCATGCTGTTATTATGACATTCCTTCCTATCATCCAGTGATTTACCTAAATGATATATGTTTTAAGatcaataataatagttaaatgATGCTCTGTGATcgattgtataaaataaataaatgaacaaacattt

Function

GO:

id name namespace
GO:0042116 macrophage activation biological_process
GO:0002274 myeloid leukocyte activation biological_process
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24127 lncRNA upstream 21393 2024348 ~ 2320138 (+) False G16222
TU24270 lncRNA downstream 76719 2426408 ~ 2429562 (+) True G16327
TU24271 lncRNA downstream 76719 2426408 ~ 2434512 (+) False G16327
TU24283 lncRNA downstream 166823 2516512 ~ 2546903 (+) True G16337
TU24291 lncRNA downstream 214799 2564488 ~ 2565843 (+) True G16344
TU24312 lncRNA downstream 252149 2601838 ~ 2602340 (+) False G16358
XM_043235022.1 mRNA upstream 1438 2323700 ~ 2340093 (+) True LOC122341568
XM_043230952.1 mRNA upstream 45486 2293303 ~ 2296045 (+) True LOC122333376
XM_043235186.1 mRNA upstream 71067 2267588 ~ 2270464 (+) True LOC122341669
XM_043235185.1 mRNA upstream 74023 2261610 ~ 2267508 (+) True LOC122341668
XM_043230556.1 mRNA upstream 175838 2160346 ~ 2165693 (+) True LOC122333054
XM_043235031.1 mRNA downstream 86 2349775 ~ 2691512 (+) True LOC122341572
XM_043235020.1 mRNA downstream 7997 2357686 ~ 2370636 (+) True LOC122341566
XM_043235048.1 mRNA downstream 72382 2422071 ~ 2423550 (+) True junbb
XM_043235017.1 mRNA downstream 99786 2449475 ~ 2474998 (+) True mast1b
XM_043235060.1 mRNA downstream 148294 2497983 ~ 2501016 (+) True LOC122341595
TU24191 other upstream 175917 2160845 ~ 2165614 (+) False LOC122333054
TU24133 other upstream 227192 2112037 ~ 2114339 (+) True G16223
TU24128 other upstream 277747 2056681 ~ 2063784 (+) False G16222
XR_006250539.1 other downstream 215198 2564887 ~ 2564955 (+) True LOC122342193
TU24296 other downstream 218395 2568084 ~ 2568999 (+) True G16347
TU24318 other downstream 291523 2641212 ~ 2646750 (+) False sumo2b
TU24319 other downstream 291523 2641212 ~ 2646750 (+) False sumo2b
TU24591 other downstream 933301 3282990 ~ 3283656 (+) True G16530

Expression Profile