RNA id: XM_043235080.1


Basic Information

Item Value
RNA id XM_043235080.1
length 1811
RNA type mRNA
GC content 0.43
exon number 12
gene id atf7ip2
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18372757 ~ 18378482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACATAGCGGACATTGCTACCCGCTACCTTTCGTGCCGGGACTTATTCAAAGAACCGGAAATCCCCACTAAGTTACTAAGCTGACCGGCAGTTACGACGCGTTTGGGATTCCGTTTAAGTATGAAAAGGTCCAGACATGAGGACGACTCTGCAACCTTACACTTGGATCAAGAAAGTGGGCAGAATGCAAATAAGCTCCCTCGATCCGAGATTGAAAAGATTATATCAGATAAGGTTGTGACTGCAGTCGAGCAGTCTGACTCCAAGATGAAGAATCTGTTGGAGAGAATCGGTGAAGTGAACAGTGAACCCAGATACGATGCCAGAATCAAGAATCTGGAAgctCATGTAAGGAAGATAAAACGAAGAGGAGATGCAGTATTTGCGTATATCAGAAAGTTCAGATCTTTAGGGATGTCTCAGAATCAGTCTCCTCCTCCTTCAAGTCCTCCTCCTGTGCAGCCACAGAGATGCATCTCTCCAGCTGAACCAGTAACCAATATATCCAGaagTTCAGTCAATGGAGGGTGTTTCAGTGACAACGCTTTAATATCATCAGCAGACAATGATTGTGAGACGACCGCACTGAGAAGACCGAAGAAAGGGTTCTGGCAAAGCTTGCGACCTAAGAATCAGGCTGTTGAGCTTACAGAAGACAGAGgTTCAGCAGCCAGACTGAATGAGGAGAGCCTGGTTACCCAGCCGGCAGATCAGAAATCAGAACCCTTAAAACAGGAACGGTCAAAACGCTCGAGCGCACCACCTGTGGCCAGTAAAGAAGAAAAGCTAAGCGTTACGGAGGAGGACAGTGTCAGTTCTTCAGTACAGCTGCAAGAGGAGGACTGGCACTCTAAACTCCATCCGTTCCCAGACACGCCGTTTCCCAAAGAGCTTCCGGTTGTAGCTGCTTCTTACAACTTGCCCCAGAAGCCGGTGTTGAAACTGGCTCGGATTGGAAGCGCTCAAGAACTAGGCATCGCCTGGACCGTGGACCAGAAAGATCCCCATGCAGCGGAGATGGATTGCTACTTCATTTACGTTTCCCATGAACACAAAAACGGCACTTTTTCAGCATGGAAGTGCCTCGGAGAGATCAAAGCCATGCCTCTTCCCATGGCCTGCAAGGTGTCAGACTGCAAAGGAGATAAACGACTGTGCTTTATCGTTGTGGGGAAGGATATATTTGGCCGGTACGGGCCGTATAGTGACATACGCACTGTTGCATCAGGACAGAAATGATCTCTGCAACATTGCACCAGTGTTGAAACTTTTGTTTGTATAAGGTTAGGAGTATGAATGTGACTCTTTGTACCGGGATTtcaagtatttaattttttttaagatttgaatttctttaaaagatGTTAAGTTGGGTAcaaatgaaagctttttttttttgtttttatttctagtaaaatgtttttttagttgttgttgttgttgttgttgttttttggggttttaagTAACAAAGAGCCCAGAAAGTCATTCCACTAATATGAGTCTTACTAAcatgaaaacattcaaaaagaaGCTGCTgtcttgcattgtttttttataaagttgCAAACTGATTTCATTTGCCTCTGGTCTTCATAATGTGAGGTCTTTTCAGTGGTATGAGTCAAAGCAGTCTCTAGCCATAATAAATGGTGATAGTTAACGTCTAATGTAAGCGACTACAGCAGAAATTACACTCTACTCAAATGGAAATGTAATACTGAATAAGTCGTTCTCAAAAATGTTCACTTCTGACTTTTTTGTGATGAATTCATTCAGTACCATTTTGCCATAAAAGACGGTGGTAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31312 lncRNA upstream 214211 18158171 ~ 18158546 (+) True G21076
TU31309 lncRNA upstream 253331 18116538 ~ 18119426 (+) True G21073
TU31280 lncRNA upstream 330136 18035539 ~ 18042621 (+) True G21049
XR_006250480.1 lncRNA downstream 196205 18574687 ~ 18579704 (+) False LOC122341661
TU31450 lncRNA downstream 197531 18576013 ~ 18744585 (+) True LOC122341661
XR_006248109.1 lncRNA downstream 273879 18652361 ~ 18654715 (+) True LOC122331012
TU31489 lncRNA downstream 324102 18702584 ~ 18703683 (+) True G21180
TU31495 lncRNA downstream 450204 18828686 ~ 18829253 (+) False LOC122341799
XM_043235541.1 mRNA upstream 242946 18124994 ~ 18129811 (+) True c3h16orf72
XM_043232241.1 mRNA upstream 270824 18097645 ~ 18101933 (+) False si:ch211-157c3.4
XM_043233962.1 mRNA downstream 27484 18405966 ~ 18425076 (+) False nubp1
XM_043233963.1 mRNA downstream 27507 18405989 ~ 18425076 (+) False nubp1
XM_043233959.1 mRNA downstream 47878 18426360 ~ 18437883 (+) False ciita
XM_043233960.1 mRNA downstream 48627 18427109 ~ 18437883 (+) True ciita
XM_043233961.1 mRNA downstream 52391 18430873 ~ 18437883 (+) False ciita
TU31277 other upstream 270825 18097645 ~ 18101932 (+) True si:ch211-157c3.4
TU31290 other upstream 297183 18074397 ~ 18075574 (+) False LOC122341796
TU31207 other upstream 466114 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 649334 17719182 ~ 17723423 (+) True G20950
TU31020 other upstream 1176873 17163701 ~ 17195884 (+) False LOC122341316
XR_006250035.1 other downstream 27484 18405966 ~ 18425076 (+) True nubp1
TU31399 other downstream 64908 18443390 ~ 18517665 (+) True G21124
TU31393 other downstream 127648 18506130 ~ 18517665 (+) False G21124
TU31466 other downstream 303872 18682354 ~ 18687853 (+) True G21173
TU31491 other downstream 347479 18725961 ~ 18732098 (+) True G21182

Expression Profile