RNA id: XM_043235088.1


Basic Information

Item Value
RNA id XM_043235088.1
length 4003
RNA type mRNA
GC content 0.54
exon number 25
gene id xpo6
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4963561 ~ 4983738 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACTTCCGTTAGTTTAATGGGCAGAGGAGAGGAAGCTGCGAGAGGCCTGCACGCAAACAGCGATCCCACCAACCCAAGGAGTGGCTCTGTCAGTCTTCCGAGGGCTCAAAATAAAGCACCGAGCCCCGCACAGGGCTCCCGCCGCGCGAGACGTAAACAACAGAGTCGCGACATTTTTTTTAACGCCGCTGTTGCGTTGCTCTTCTCTCCGTTTCGCAGTAGTTTTGTGCGGTTTGCCGCCGCGTATCCGGCCAGCGTCGGCTCCAGCCTCTGTCCCTTTAGGCTCTCGCTAGATCGACAGTAATAACAAGTGTTCCGGAGCCAGTGACCGGGGTCCGCCGGTTGCGTGCGGGACAGCGATGCGGAATTTCGGTGCTTCCAGATGAAACGCAGAGGCCCCAGAGGAAGCATGAGCGAGCAGAACCAGATTCATCTCATAGTATAGCCGCATAAAAGCTCAGAGGCCTGGCATGGCGTCAGAGGAGGCCTCCTTACGGGCCCTGGAGAGTCTTATGACAGAGTTTTTCCACAGCTGCACCACCAATGACCGCAAGAGAGAGATTGaAGAGCTGCTGAACAGTTTTGCGGGTCAGCCCGGCTCGTGGAGGCACTGCCTCTACTTCCTCTCCAACAGCAGAAATGAATACGTCATGATGTACAGCCTTACTGTGTTTGAGAATCTTGTGAACAAGATGTGGGTCGGTGTAGCCAGTGAGGACAAAGCAGAGCTCCGTAGCTGTTTGCCCAAGCTTCTgctttcccagcatgctctgcTGCCTTTCTTCATCAGAAACAAGCTGTGCAAAGTCATCGTGGACATCGGACGCCAGGACTGGCCGATGTTCTACCATGACTTCTTCAGCAACACCTTACAGTTGGTGCAGTCACCGTCTCTCGCGCCGCTGGGGTTAGTTCTGCTCAAGATGACCTCAGAAGAGCTGGTCTGTCCGAGAGAAGACTTGAGCGTTTCTCGTAAAGAGGAGCTGAAGAAACTCCTGCTGGATCAGATCCCCACCGTGCTGAACCTTCTGACTGGTATTTTGGAGACGGTATGGGACAAACACAGTGTTACGGTCACCACTCCCCCTCCGTCCCCTACGTCTAGAGAGTCAGGCATTCTTTCAGGCGACAGCACACCGATGGTTCTGGAAGCTGAAAGTGCCGCTCTGTGTCTGCTAGCGTTGGAATGCTTGGCTCATCTCTTCAGCTGGATCCCTCTCTCCTCTTCCATCACTCCATCCCTCCTCGCTTCGATTTTCCACTTCGCCCGCTTCGGATGCCAGCAGCCAATCAAAACGAAACCTCTGCCCACTTCCAACGGAGACTCCGCCCCCGGAAGCCTCCCGGCCAATGGCGGCGGCGGCGGGGGCCACGGCAGGACTGGTCAGATGGTGGGCCACGCCGAGCGCGCCAGGCTGGGCGTCATGGCCATGAACTGTATTAACGAGTTAATGTGCAAAAACTGCGTCCCGGTGGACTTCGAGGAGTTTCTGCTCCGCATGTTTCAACAGACTTTCTACCTGCTGCAAAGACTCACAAACACGCACTCGCACACCAACACGCACACTATCAAAAGCAGGTTGCAGGAATTAGACGAAAGCTATGTGGAAAAGTTCACAGATTTCCTCAGGCTGTTTGTTAGTGTTCATCTGCGGAGGATCGAATCTAACGCCCAGTTTCCTCTAGTGGAATTTCTAGCTTTGCTCTTCAAATACACCTTTAACCAGCCGAATCATGAGGGTTATCTGGCCTGTCTGGATATCTGGAGCATATTCCTGGACTACCTGACCACCAAGATCAGAAGCCGATTGGCTGACAGCGACAGTGTCATTAACAGGTATAAAGACGCTCTAGTTCTGCTGCTTCGTGAAGTTCTTAACAGGATCCAGTTCAGGTTAAACCAGAGTCAGCTAGAAGAACTCGACGACGAGACCCTTGACGATGATCAACAGACGGAATGGCAGCGATACCTGCGTCAGAGTTTGGAAGTGGTTGCCAGGGTAATGGAGCTGCTGCCATCCCAGACCTTTTCAGTTCTGtttccTGTGCTGCAGGAGGATCTGGACATTTATCTTGGGCTGCAGCAGTTTATCGTGAGATCAGGAACAAGTCGCAGGCTGAACATTACAGCGGAGGCCGACTGCAGAAAGCTGCACTGCGCTCTCAGAGACCTGAGCTCTCTTCTGCAGGCCGTGGGACGTCTGGCCGAGTTCTTCACAGGGGACGTTTTCACCGCTCGCTCTAACGACGCCCTCGCCATCGTACGGAGATTAGTGGAAGTGTCTTGTTACGGTTCTCAGATCAGCCTGTATGATGTAGAAATGGCTGTACCTTCAGTGCTCAAACCGGACCTTATAGACGTCCATGCGCAGTCATTGGCTGCTCTGCAGGCGTACTCTCATTGGCTGGCACAGTTTTGCGGCGAGGTGCAGCGACAACAGGATCAAACGCAATTTGTGGACCTCATCACGTCGAGCATGGCCGCCACGACCCCTCTCATCAATGCCAAGGTTCCAGAGAAACTCCTCTTATCTGCGTGTCATCTCCTGGTCTCCATGGCGACCACCGTGCGGCCGGTGTTCCTGGTGTCGCTGCCGGCGGTGCAGAACATCTTCAACCTGATCACAGAGAATCATAACCACAGATTACCTCAGGAGGCTCACGTCCTCGTGTGTCGAGCTCTGTCAAACATGTTGCTGCTGCCGTGGCCCAGTCTGCCGGAGGCGGAGCAGCAGTGGCAGAGCCGCTCAGCCAATCATGCGCGGCTTCTCAGCAGTCTCACGCAGCAGTACCGCCTCCTGCCCCGCCCACCCAGCCATCACCCCAACAGTAAAGCGGTCATCCAgcagactctgtgtgtgttgaGGGATCTGGTGGACAGTATATCAGGAGAGGCCACCAAATCACGTCAGATCTGTTACCACAGTCTGCAGGAGTCTGTCCAGGTCACGCTCGCGCTCTTCCCTCTCTTCATCCAGCAGCCAGATGTGACGGATGAGATGCTGAGTTTCTTCCTCACGCTGTTTCAAGCGCTGCGTGTGCAGATGGGTGTGGCCTTCACGGAGCAGATCATCCAGACCTTCCTCAGCATGTTCACCAGGGAGCAGCTGGCGGTGAGCATCTTACAGGAGGGCAGCTCTGGCTCCAAAGTGGTTCAGAAGTTTCTCAAGATTCTGCAGGTGGTGGTTCAAGAACCTGGTCAGACTTTCAAACCTCTGTTACCCAGCATCCTCAGCCTTTGTTTGGATCAGGTTTACCCAATAGTGGCAGAGCGCTCCTGTCCAGATGTGAAAGCAGAGATGTTCGAGCTGCTCTTCCAGATTCTCCATCAGAACTGGAGGTTCTTCTTCAAGAGCTCAGTGTTGAGCAGCATTCAGAGAACCGGAGCCGAAGAGCTGATGGAGAACCAAGCGCAGTTCATTGCTGCCATGCAGGCCTTCGGTCAGTCTTTTCTGCAACCAGACATTCACATCTTCAAGCAAAATTTGAGTTACCTCGAGGTCCTGAACACCAAACACAAGCTGTACCACAGgAAGCTGTTCCGGAACGCCATGCTGTTCCACTTCATAAATGTTCTCCTTCAAGTTCTCCTGCACAAGAGCCACGACCTTCTCCAGGACGACATCACGCTGGCGCTCTACAACATGGCGGCTGTGGATTTCTCAGCGTTTTACTCTTCCTTCTTGCCAGAGTTCCTCAATGGCTGCCAAGGCCTCGACCCTCACCAACGCACAACGCTTGCCCGAAACTTCACGCCAGAGAGGGACCTGCCGTCGTTTTCTCAAGGAGTGTATCGTATCGTGAACGACCTGCGCTTCTACAGACTGTGCAATGGAAGCCTTCCTCCGGGAACCTTGAAGCTATAGCAGCGCTCAGCCAAACCGCGGCCCATCCCTCTCCGGGACGCCGACCGCTGCTTCGGCGCTCATGCCTTTCGCCCGAGACCTCGGCGGTGGTGGTGGCGGCGCGATCCGAGAGCAGCTTCTTCTATGTTTATCTCAGC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K25204 XPO6, RANBP20; exportin-6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250507.1 lncRNA upstream 49068 4912694 ~ 4914493 (+) True LOC122341984
TU25293 lncRNA upstream 57241 4905656 ~ 4906320 (+) False G16981
TU25289 lncRNA upstream 60282 4898839 ~ 4903279 (+) True LOC122333539
TU25378 lncRNA downstream 8258 4991996 ~ 5035379 (+) True G17026
TU25379 lncRNA downstream 8258 4991996 ~ 5009423 (+) False G17026
XR_006250492.1 lncRNA downstream 223506 5207244 ~ 5211693 (+) True LOC122341773
TU25426 lncRNA downstream 224918 5208656 ~ 5208867 (+) True G17059
TU25427 lncRNA downstream 227296 5211034 ~ 5211465 (+) False LOC122341773
XM_043235850.1 mRNA upstream 1581 4958012 ~ 4961980 (+) True antkmt
XM_043235851.1 mRNA upstream 5702 4952501 ~ 4957859 (+) True si:dkey-282h22.5
XM_043235852.1 mRNA upstream 5702 4952520 ~ 4957859 (+) False si:dkey-282h22.5
XM_043235744.1 mRNA upstream 26821 4930445 ~ 4936740 (+) False LOC122341982
XM_043235385.1 mRNA downstream 3702 4987440 ~ 4991394 (+) True nme4
XM_043235578.1 mRNA downstream 255835 5239573 ~ 5241326 (+) True gadd45gip1
XM_043235154.1 mRNA downstream 296441 5280179 ~ 5282321 (+) True swsap1
XM_043235847.1 mRNA downstream 326755 5310493 ~ 5312308 (+) False elof1
XM_043235013.1 mRNA downstream 425861 5409599 ~ 5413133 (+) True LOC122341561
TU25292 other upstream 56595 4905656 ~ 4906966 (+) True G16981
TU25278 other upstream 416994 4510737 ~ 4546567 (+) False G16978
TU25277 other upstream 430263 4470732 ~ 4533298 (+) True G16978
TU25283 other upstream 477097 4470732 ~ 4486464 (+) False G16978
TU25288 other upstream 504426 4458698 ~ 4459135 (+) False G16979
XR_006248137.1 other downstream 573270 5557008 ~ 5565974 (+) True LOC122331163
TU25833 other downstream 613361 5597099 ~ 5598232 (+) True G17302
TU25994 other downstream 1114463 6098201 ~ 6099152 (+) False fbxw9
TU26034 other downstream 1209002 6192740 ~ 6195022 (+) False LOC122341437
TU26037 other downstream 1209002 6192740 ~ 6195022 (+) False LOC122341437

Expression Profile