RNA id: XM_043235099.1


Basic Information

Item Value
RNA id XM_043235099.1
length 1021
RNA type mRNA
GC content 0.44
exon number 6
gene id tmem220
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3829649 ~ 3831319 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tggcaaaataaataaaataagaataaaaaatgtactgcTAAAGCATTAAGGCAGCAAAGAAAACGGTTTGGATCATCTGGacgttatttatatattatataataactaaCAGGCCTATGTAACTGACTGATTTCGTAATTCTATGTAATTCGACTGATTTAATGGTTGCTTGCGTCGTTAATCCAAACGGTTGAATGAGAATGATCGTGAACTACACTTCCCACAATGCCTAGTTTCATTCCGGCGACGGTCGTGTCCGGAAAAGCGTACAGTTATAAAGTCCGATGTGTTGAGTTTCGGAGAAATGCTGATAAACTCATTAAATGCGAAATAGTCCGAATGGCGAACAAGACGAGTGTCTCGTTGTCTCAGGTCATCTGGAGAGCTTGCAATTTATTaatgtcagtgtttttctcGCTGGCGACTTACGTGCAGATAAATGATCCGGATGCCGCTTTGTGGATGGTTGGTTACGCTATTCCAGCCGGACTGTGTTTTTCGCTTTGCTGCCAGCCTCAAATAACAGAGTCGTTGTTATGGAGGAGGCTGGCCGACTTGCATGTGCTCGTAGCCTCTGCGTTTGCAGTCATTATGGGCTGGAAACTTCATAAAGAGGGGATTACGGACATTTTCCAGCAAGAGGAAGGAAGggAATGTTGTGGGCTCGTGCTGACGGTGTTCTGGCTGCTCTTGTGCAGACGTTCAGGAAGGAGCTCCGTGGGCTCGGTCAGGATCTGCACCGCTGTGGGAATCGCAGCGTTTCCCTTCGTCACGTGGATGCATTACTACATGAACGCAGAGCTGAGGAAGCACTGGCCTGAACACTGCACCACCGCTCTCTGATCAGCTGCTAGCATCGTGCAGACGTTCGTCTCTCAAATCTCCTGAATTAATtcgaaaataaataacagcgtAGTGCCTTTATAATACAAAAGTGACCCAAAGATTCATCTGAAGGCTTGTGTTCAGTCATATCGTTTCTGGTGTTGAATAAATAACAGCCGTTTTTTAAAAACGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24725 lncRNA upstream 8222 3815723 ~ 3821427 (+) True G16619
TU24721 lncRNA upstream 14422 3800652 ~ 3815227 (+) False G16619
TU24730 lncRNA upstream 14422 3800652 ~ 3815227 (+) False G16619
TU24732 lncRNA upstream 14422 3800652 ~ 3815227 (+) False G16619
TU24739 lncRNA upstream 25138 3745907 ~ 3804511 (+) True G16623
TU24766 lncRNA downstream 7551 3838870 ~ 3861285 (+) True G16639
TU24780 lncRNA downstream 50581 3881900 ~ 3882705 (+) True G16651
TU24793 lncRNA downstream 113282 3944601 ~ 3945039 (+) True G16664
XR_006250423.1 lncRNA downstream 156207 3987526 ~ 3991553 (+) True LOC122341104
TU24809 lncRNA downstream 171416 4002735 ~ 4007765 (+) False G16672
XM_043229612.1 mRNA upstream 16305 3809170 ~ 3813344 (+) False LOC122332297
XM_043229621.1 mRNA upstream 16305 3809172 ~ 3813344 (+) True LOC122332297
XM_043229629.1 mRNA upstream 16305 3809172 ~ 3813344 (+) False LOC122332297
XM_043235400.1 mRNA upstream 302735 3516390 ~ 3526914 (+) False mmd
XM_043235402.1 mRNA upstream 302735 3517701 ~ 3526914 (+) False mmd
XM_043232053.1 mRNA downstream 44007 3875326 ~ 3877867 (+) True mrps7
XM_043235966.1 mRNA downstream 63949 3895268 ~ 3901449 (+) True sstr5
XM_043234359.1 mRNA downstream 80690 3912009 ~ 3916436 (+) True LOC122341043
XM_043234367.1 mRNA downstream 80703 3912022 ~ 3916436 (+) False LOC122341043
XM_043234139.1 mRNA downstream 97029 3928348 ~ 3938422 (+) True LOC122340641
TU24749 other upstream 16346 3809208 ~ 3813303 (+) False LOC122332297
XR_006250493.1 other upstream 304248 3510076 ~ 3525401 (+) False mmd
TU24613 other upstream 506595 3320820 ~ 3323054 (+) True G16541
TU24591 other upstream 545993 3282990 ~ 3283656 (+) True G16530
TU24318 other upstream 1182899 2641212 ~ 2646750 (+) False sumo2b
TU24797 other downstream 116304 3947623 ~ 3985611 (+) True G16667
TU24811 other downstream 138196 3969515 ~ 4033526 (+) True G16672
TU25218 other downstream 525713 4357032 ~ 4359304 (+) False LOC122340527
TU25239 other downstream 605969 4437288 ~ 4438201 (+) True G16955
TU25288 other downstream 627379 4458698 ~ 4459135 (+) False G16979

Expression Profile