RNA id: XM_043235105.1


Basic Information

Item Value
RNA id XM_043235105.1
length 3087
RNA type mRNA
GC content 0.44
exon number 8
gene id thraa
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13398956 ~ 13411948 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagaagtgtcATCCTACCAGCTCAGAGTCCCTGTTACCGCAGATAGATTGCTGACAGCTTTGCGAGAGGAGGGAGACGGCAAtcatgcacattttacagcccCATTATGTCAACAGGTGGCCGAATGGagtgaagagaaaaagaaagaatagtCAATGCTCTATGAAGAGCACCTCCGTGAAGATCATCTCTGTTCCAGGGTATGTTCCCAGCTACCTGGAGAAAGATGAGCCATGTGTGGTATGCGGGGACAAGGCCACTGGCTACCATTACCGCTGCATCACATGTGAGGGCTGCAAGGGTTTCTTCAGAAGGACAATACAGAAGAATCTTCACCCTTCCTATTCCTGTAAATATGACAGCTGTTGCATCATTGATAAAATCACCCGCAACCAGTGCCAGCTGTGCCGCTTCAAGAAGTGCATCTCGGTGGGCATGGCCATGGACTTGGTGCTGGATGATTCGAAGCGTGTGGCCAAGAGACGGCTGATCGAGGAAAACCGGGAACGGAAGAAGAAAGAGGAGATGGTAAAAACACTGCACACTCGGCCTGAGCCCACCGTCTCTGAGTGGGAGCTGATCCGTATGGTGACGGAGGCTCATCGCCACACCAATGCCCAGGGCCCTCACTGGAAGCAGAAACGCAAGTTCCTACCAGAAGACATCGGGCAGTCTCCAGCCCCCACATCAGACAATGACAAAGTGGACCTGGAGGCCTTCAGTGAGTTCACCAAGATCATCACCCCTGCCATCACACGAGTTGTGGACTTTGCCAAAAAACTGCCCATGTTCTCTGAGCTGCCCTGCGAAGACCAGATCATCCTGCTGAAGGGCTGCTGTATGGAGATCATGTCCTTGCGCGCAGCGGTGAGGTACGACCCCGAGAGCGAGACGCTGACCCTGAGCGGGGAGATGGCTGTCAGTCGAGAGCAGCTGAAGAACGGAGGGTTAGGAGTGGTGTCTGATGCCATCTTTGATTTGGGCAAGAGCCTGTCACAGTTCAACCTGGATGACTCGGAGGTGGCGCTGCTGCAGGCTGTGCTGCTCATGAGCTCAGATCGTTCCGGACTCACGTGTGTGGAAAAGATCGAGAAGTGTCAGGAGATGTACTTGTTAGCATTCGAGCACTACATCAACCATCGCAAGCACAACATCTCGCACTTCTGGCCCAAGCTGCTGATGAAGGTGACGAACCTGCGCATGATCGGCGCCTGCCACGCCAGCCGCTTCCTACATATGAAAGTGGAGTGTCCCACAGAACTCTTCCCCCCGCTCTTCCTAGAGGTCTTCGAAGATCAGGAGGTGTGACCGAGAGATGCAGGGGAACTCGGGGAGGGAAAACTGATCGTGAATTCGTTTTGCGCGAAGCATTTGTTTTTGCGTCCTCGTGCAATTGCCGAGCCGGGacatgtacttttattttgcaccGTCAGATTTGTCTAGGATACGTTTTGGGTTGTCGGCCTCCACATCTTTCGACCCTACAGTCACTTGCCATTCAGATTCCTCCCACAGACGGACAAAAAGCTAGCATGCATCAACCTACCTCTCGTACCGACATACCTCCCAACCTCAGAAGGAGCTTGTTTTAAAAGCGTGACAAACAAACCCACACATTCAAAAGCTATTTCGGAAACGCTAGCTGTTGTTGTAAGTACAGAGGAAACGCCCATGAGCAACATCAAACGCCTACATTTGGGCGATTAACCTAATTTTCCTCTGATTACAGTAACATTTCAGCATTCATCTTTCTCTTTGCACGCATAAAAAATCTCCTTTGTGAACATAACTACCTGTGTGCACTCGTACACTCTGTACATACGTTAATATGTTGTGTGAACTTCTCATACCTCATATACACCAGCATACAGACATACATGTAGCAACATGtccatacatgtatgtatgcgtACCATTCTACCTGCATTAACCCATTTGTCTTCTTACAATGCAGCGTCTACAGTTCTCAAACACCTTTCTGTCTAAGATATCCACTTGTATGTTACTTAAGCTGAACATTTTGACCTCATTTTCTGAATAGCCTCTTGTCGCTTTCTGGCGTGTGACCCCTATATCTATGGTGAGGTATTTCCTCCTGTATTCATCTGTCCTAGCGTTGTCCGTTTGGGCAAACGGAttgatgtaaatatgtattaagcCATATGCTGTGGTTTGAGACGCATCCATCTCCATATAATAGCCTTCAGATCAGCTTATTGTGCTTCAACTCACCTGGATCATCAGATGGTAGTACCCTATGGTATTACATAGAACTTCAGAAAATACTATGGTGTTATTCACAAAACATGGTATTGCCATGGCACTTATTTTAGGGGGATTACTACCCCTAAAATCCATCAAATCAAGTACAGGGTGGTAAATGATTCCTGAAATTCAGAATCTGACAGATGATAGATAAGGTTAGATCATAAGAGTAATAGGGTACATTGGGGCTAAACATCAAAATAACTTCAACAAAAGGCATTgaacttttttgtttaattgtgttgGAAATCTGAttaaatgctacatttattttagtgacatatttaaaaatgcgcTTTTGCTACCTTGTTTCACAATTTAAGTCAATTTAAAactcaaaatgtgaaaattgtgtcaacatttactcaccatcaactgtttggatACCAGCTTTCGTCACAATATCTTCTTATGTGTTTGACAAAAAAGGTGGCCacgctttatattaggtgtcCTATGtatttgcatcaaaaaataagtacaatgtacttattgtgttcgtaatgtattgcaaaacacttttgctgctatcgGTGGtctgggtaggtttaaggtgtaagggatgggttaACAGTGTGATTATAAATGTAGAGAAGTACAGAAATAATTTACGGATGTAATTACATTATAGGTAAATTAAATACATAGTAATTAAGGCCAGCTAATATAAAGTGGGCCCAAAAAGAAACTCGTACAGGTTTTGAACAAATggaaagtgagtaaatgatgatgattattgatgaatttttaaccatttattggcatatttgcatttttggcacttttatgttaaattaaaatcatatacACTCAGATGTAT

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29519 lncRNA downstream 41167 13357579 ~ 13357789 (-) True G19811
TU29406 lncRNA downstream 269348 13125521 ~ 13129608 (-) True G19726
TU29374 lncRNA downstream 307804 13090671 ~ 13091152 (-) True G19703
XR_006248461.1 lncRNA downstream 326128 13072560 ~ 13072828 (-) True LOC122332187
TU29260 lncRNA downstream 496046 12900781 ~ 12902910 (-) True G19672
TU29594 lncRNA upstream 224586 13633559 ~ 13633785 (-) True G19872
TU29639 lncRNA upstream 377036 13786009 ~ 13792602 (-) True gng13b
TU29640 lncRNA upstream 377036 13786009 ~ 13792233 (-) False gng13b
TU29698 lncRNA upstream 488658 13897631 ~ 13898932 (-) True G19947
XR_006250534.1 lncRNA upstream 508727 13917700 ~ 13930277 (-) True LOC122342150
XM_043235890.1 mRNA downstream 34345 13358939 ~ 13364611 (-) False zgc:163143
XM_043235891.1 mRNA downstream 34345 13360482 ~ 13364611 (-) True zgc:163143
XM_043235893.1 mRNA downstream 40015 13353993 ~ 13358941 (-) True LOC122342102
XM_043235892.1 mRNA downstream 46506 13349978 ~ 13352450 (-) True LOC122342101
XM_043235889.1 mRNA downstream 91390 13285376 ~ 13307566 (-) False sept9a
XM_043225647.1 mRNA upstream 26960 13435933 ~ 13453487 (-) True nsfa
XM_043235287.1 mRNA upstream 45293 13454266 ~ 13460815 (-) True psmd11a
XM_043235989.1 mRNA upstream 266533 13675506 ~ 13678095 (-) True LOC122342172
XM_043233958.1 mRNA upstream 356259 13765232 ~ 13767068 (-) False ndufab1b
XM_043233957.1 mRNA upstream 356259 13765232 ~ 13767064 (-) True ndufab1b
unassigned_transcript_285 other downstream 298312 13097129 ~ 13100644 (-) True LOC122341774
unassigned_transcript_284 other downstream 306110 13092210 ~ 13092846 (-) True LOC122341304
unassigned_transcript_283 other downstream 311689 13086375 ~ 13087267 (-) True LOC122332140
unassigned_transcript_282 other downstream 313990 13084026 ~ 13084966 (-) True LOC122341303
unassigned_transcript_281 other downstream 318335 13080070 ~ 13080621 (-) True LOC122332138
TU29676 other upstream 396395 13805368 ~ 13805978 (-) True G19933
TU30091 other upstream 1026177 14435150 ~ 14439541 (-) False mlx
TU30092 other upstream 1027242 14436215 ~ 14437040 (-) False mlx
TU30093 other upstream 1027242 14436215 ~ 14439541 (-) True mlx
TU30094 other upstream 1027242 14436215 ~ 14439541 (-) False mlx

Expression Profile