RNA id: XM_043235129.1


Basic Information

Item Value
RNA id XM_043235129.1
length 2977
RNA type mRNA
GC content 0.50
exon number 8
gene id nr1d1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22568967 ~ 22575990 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCGCTCATCTCGTCCATGCTCCTCGGAAcgaagcaaaaagcaaaaccgGGCCGACTTGACAGAACAGTTCAGAGCGACACAGATTGGGCGAGTGACAGGCGCACTGGCGTGTGAGACGCTTTTACTGAATGAACCGCATTTCCCTGACGCCTTCGCGCAGCATTTAACATCACTTCTCGGCATCTAGCAGATGAGCGCGTATTTTATGCGGTTTTAGGACGGTCGTTTCGTGGCAGTTATGCCTTTATCGTAAACAAGAACCGAtctctaagaaaaaaaaaacagaagtgcaTCTGGAGAGAGTGCATCTCTCTGGCGATTCTGCCATAAATCTGCATGACTTTACTGGAGCTCAACATGACGACAGCAGTAGATACAAGCAACACAGGTGGGGTAATATCATATATCGGGTCATGCGGAGGCTCTCCCAACCGCACCAGCCCCGTGTCCATGTACAGCGAGAACTCCAACAGCAGCCTGCAGTCCCTTACACAGCCCTGCTTTGGCTCTTCATTCCCACCTTCCCCCAATGGATCCCAGGATTCCTCACGCATGtacaccagcagcagcagcagcagctcaagTTCAGGATCAGGAGAGGACGGAAGCTCATCGTGCTCTGGTGGATCCCCAAGAGGACGCGATGATGGTGGAAGTGCACGCAATTCACCCAACAAATCAGTTGCCACCCTTACTAAGCTGAACGGAATGGTGTTGCTTTGCAAAGTGTGTGGCGACGTGGCTTCAGGATTTCACTATGGTGTCCATGCCTGTGAGGGATGCAAGGGCTTCTTTCGACGCAGCATCCAGCAGAACATCCAGTACAAAAAGTGCCTTAAGAATGAAACCTGTACCATTATGAGGATCAACCGGAACCGGTGCCAGCAGTGCCGTTTCAAGAAGTGTCTGTCTGTGGGAATGTCCCGAGACGCTGTTCGTTTTGGCCGTATCCCGAAACGTGAGAAACAGCGTATGCTGGCCGAGATGCAGAACGCCATGAACAACATGGTGAACAACCAGCTTCAAAATGAATTCCAGCTGGCGAGCATCACATCCAACACCCCTTGCTCTTCGTCTTCATCCCCATCCacctcttcctcatcctcatctccGTGCCCGGGGCTTACAGTGGGACCCCAACCCCAGCCCCCCGCAGTGCCCATAGCATCGTCCCCTTCCCCTCCGGCCCCAGCCTCCCCTTCAGTGCAGCCGGCTCAGAGTCCCCCGGCACTGACGACTTCTCCACCACCGTGCTCCAGCCCAGGTGTAGACAAAACCATAGCCGCCATAACCAGAGCACACCGCGAGACCTTCATCTACGCACATGATAAGTTGGGTCCAGCACTCCTGCCACACAACGGGGAGCTGGACAACCAAAGCAGCAACCGCTGCATGGCTGGATACCACCTCAACGGCCACAACACCATCTACCACCATGATAACAATGTCCCTCATCATTGTAACAACTTGGAGGTGCCACAAGAAAACGGCCTCCATTTTCAAGCCTCCCAAGCCTCTGGACAACATCAGCAGCACAATAACAATGGTCAGCGAACTCCAAACAGTAACCTCTTTGGCATCCACCACAGTCAGGAGATGAACAGCAGCTCCCAGGGTCAGAACTGTCCATGGAAAAAACGCAAGGACATTCTGCTGgctTGTCCAATGAACATGCATCCTTACTCAGACCCCAACAAAACACCACAGGAAATCTGGGAAGACTTCTCTCTTAGCTTCACCCCAGCGGTTAGAGAGGTGGTGGAGTTTGCCAAACATATCCCAGGCTTCAGCACGCTATCCCAGAACGACCAGGTCACTTTGCTGAAGGCCGGAACCTTTGAGGTCCTCATGGTGCGCTTCTCCTCTCTGTTTAACTTAAAAGAGAGGACCGTAACGTTCATCTCTGGCACCACCTACAGCCTGGAGGCCCTGAAAAGCATGGGCATGGGAGACCTGCTGGGAACCATGTTCGACTTCAGTGAAAAACTCAACGCATTAGAGCTCTCAGCAGAAGAACTGGGACTCTTCACTGCAGTCGTGCTGGTGTCTGCAGACCGCTCTGGCATTGAAAACGTGAATTCAGTGGAGATGCTTCAGGAGAGTTTAATCCGGGCTCTCCGATCCCTCGTCAGCAAGAACGCCCCTAACGACGCCTCCCGATTCACCAAGCTGCTGCTCAAACTTCCTGACCTGCGCACGCTGAATAACATGCACTCAGAGAAGCTGCTCTCATTCCGCATTGACGCCTGAGGTTGCAAGAAGCTGGTGAAAGTGGGTCACCTCTGGTTGACTGCAAGACAGAATGGGTACAAACATTAGAACTCTTTCCAAGAGAACCCACCAGAAAGCAAACTCATGCCTTTGGCGCCTAAAAGCACTTGATGACACATTTAAAGGGACGCTTTGGTGCCTAATGGTTGGTCAGTAGTCTATATGGCTTGATAACCATAACGGGTCCGTGAGCCACTTTCAGTACTTACCTGAAATGGGTGGAAAGATTAAGGTAATGataaagcagacaaaaaaagccACTCATATTTGGACTGCATTTTCATGGGGAACAAGTGCAAAATTCCTCTCGCAAGGAGTCACAGCCAGGCCAGAAGGATCTCCAGGCCACTTCCAAACAGGGGACGATGGCCTCCTCGTGCCCAGTGCGGCCTGGGTTCCTGCTATACCCACACTCAGAGAAAGTTGTGATCATTTTAACTCAAATGCAAATGACAAGCTGTACGTGGTATTAACCTTCACACATAATCACATCCCTGTGACTTtgtaaaatatgtgtaaatatgatatacatactttaaatgttttaaaatgtataatatatatttttttgtaaagttcACATGCTCAGCGCAAATTATGAATCTATTCAAGCACAGACGTATAAGTAGAGTGTATGCATATTATAGACATAAAGACATGTATTTCAGTTGTCTTCTTCATAAAGGCATTTTATGAAACAAGAA

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03728 NR1D1; nuclear receptor subfamily 1 group D member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33113 lncRNA upstream 232746 22288141 ~ 22336221 (+) False hdac5
TU33114 lncRNA upstream 281922 22269177 ~ 22287045 (+) False hdac5
XR_006250495.1 lncRNA upstream 479036 22035882 ~ 22089931 (+) True LOC122341843
TU33156 lncRNA downstream 22028 22598018 ~ 22672911 (+) False G22340
TU33382 lncRNA downstream 148054 22724044 ~ 22725888 (+) False hoxb5a
TU33399 lncRNA downstream 189756 22765746 ~ 22766130 (+) False hoxb2a
TU33447 lncRNA downstream 323343 22899333 ~ 22903541 (+) False LOC122341356
TU33448 lncRNA downstream 323343 22899333 ~ 22901102 (+) False LOC122341356
XM_043228511.1 mRNA upstream 78177 22455402 ~ 22490790 (+) True ppp1r9ba
XM_043234902.1 mRNA upstream 119318 22434373 ~ 22449649 (+) True col1a1a
XM_043235855.1 mRNA upstream 181482 22384731 ~ 22387485 (+) True gngt2a
XM_043235854.1 mRNA upstream 181482 22386843 ~ 22387485 (+) False gngt2a
XM_043235455.1 mRNA upstream 186180 22374082 ~ 22382787 (+) True LOC122341813
XM_043235467.1 mRNA downstream 97486 22673476 ~ 22675120 (+) True hoxb13a
XM_043225470.1 mRNA downstream 109023 22685013 ~ 22689691 (+) True hoxb10a
XM_043235998.1 mRNA downstream 115188 22691178 ~ 22699171 (+) True hoxb9a
XM_043228340.1 mRNA downstream 127934 22703924 ~ 22706737 (+) True hoxb8a
XM_043228350.1 mRNA downstream 127955 22703945 ~ 22706737 (+) False hoxb8a
TU33136 other upstream 21759 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 38907 22528989 ~ 22530060 (+) True G22344
XR_006248300.1 other upstream 543056 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 592302 21975252 ~ 21976665 (+) True G22301
XR_006248723.1 other upstream 834840 21637743 ~ 21734127 (+) False crhr1
TU33451 other downstream 329387 22905377 ~ 22906695 (+) False LOC122341356
TU33550 other downstream 582259 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 827451 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 1260109 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 1474249 24050239 ~ 24051863 (+) False LOC122342055

Expression Profile