RNA id: XM_043235136.1


Basic Information

Item Value
RNA id XM_043235136.1
length 1644
RNA type mRNA
GC content 0.47
exon number 13
gene id scpep1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13982254 ~ 13986772 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAGTCATATGATACCGAGCCTCACATCACGGTGTCCAGAGGACTGTATTTGAGTACTTATAGCCGGTGGTGGGTCCAAACACAGCCCATGTGGCAGGCTGCTTGAGAGAGAGCTTGAGGTCGATAATAATGGCGCGCTCGTGGACTGGCATGCTAGCTGTGCTGCTATTTGCTGCGAGCTTTTATGTAGGTAGTTGTGTTCCTGTTCAAGCCAAAGAGTCGTGGGGATATGTGGATGTCCGTGATGGAGCTCATATGTTCTGGTGGCTGTACTACGCCAACAGCTCCAGCGCCAGTTATAAAGATCTACCTCTGGTTATGTGGCTGCAGGGAGGCCCTGGTGGATCTAGCTGTGGTTTTGGCAATTTTGAGGAAATTGGACCCCTTGACAGAGACCTTAAGCCTAGAGAAACCTCTTGgGTGCGTGCTGCCAGTGTGCTATTTGTGGATAACCCAGTGGGCACCGGATACAGTTACACAGACACTGAAGATGCCCTCACCAAGGACGTTTCAATGGTGGCATCCGACATGATGGTCCTTCTCAAGAGCTTTTTCTCTCTAAAGACAGAGTTTCAaAGTACTCCCTTCTATATATTTTCGGAGTCTTATGGTGGCAAAATGGCAGCAGCTATTTCCTTCGAACTCACAAAGGCAGTTCAAGCTGGTACAATCAAATGCAACTTTGCTGGGGTGGCTTTGGGAGACTCCTGGATCTCTCCTATAGaTTCAGTCATCACATGGGGTCCTTATCTTTACAGCACATCTCTGTTGGATGACAATGGGCTGGGCGAGGTGACTAAAGCAGCAAAGGCAGTGCTGGAAGCAGTGAGACAGGGCCAGTACCAAAGAGCCACAGACTTGTGGTCCATCACAGAGAATGTAGTGGAACAGAACACAAATGGTGTGAACTTCTATAACATCCTCGCACAAAACTCAGACGAGATGGTGAAGACCGGTTCGGATCAAAACAATGGATTTCTCTCCTCGCTGAAACGTCGCCACATTCAACCTTTGCACCGTCAGTCCCTTTCAGAGTTAATGAATGGTCCAATCAGGCAGAAGCTTGGTGTCATACCAAAGAATGTCACATGGGGAGGACAAGCTGGGGCAGTGTTTGGAAGCATGGCAGGAGATTTCATGAAGCCTGTGGTGGACATTGTAGATCAGCTTTTGGCTGCAGGGGTCAATGTTACCGTCTATAATGGCCAGCTGGATCTCATTGTGGACACAATGGGTCAGGAGTTGTGGGTGAAACAGCTGAAATGGGACGGACTCCAATACTTCAGCAAAATGAAATGGACAGCACTGGAGGACCCACAAACAGAGAGCCAGACTGGAGCTTTCTACAAGACCTACAAGAACTTTGCCTTCTACTGGATCCTCAAAGCTGGACATATGATCCCGTCTGACCAGGGGCCAATGGCTCTGCGGATGTTGAAGATGGTGACTCAGCAGGAGTGATGGATACAAACTGGAATTGCTTGCTAAACACTTTTAGACAATCAACACTCAAATTTTACCAAAACATGACAATTTTCTTTGagatcttcatttttttttttttttcaatgcctGTGTCTTGTAACATTTGTAAATCTGAATGCCTGCAAACAATAAAGTCataattttttatacagtttgaA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004185 serine-type carboxypeptidase activity molecular_function

KEGG:

id description
K09646 SCPEP1; serine carboxypeptidase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29717 lncRNA upstream 38763 13940616 ~ 13943491 (+) True G19963
XR_006250533.1 lncRNA upstream 61985 13913926 ~ 13920269 (+) True LOC122342149
TU29625 lncRNA upstream 164032 13815353 ~ 13818222 (+) True G19891
TU29624 lncRNA upstream 189699 13787833 ~ 13792555 (+) True G19890
TU29615 lncRNA upstream 276852 13698574 ~ 13705402 (+) False rbbp6
TU29750 lncRNA downstream 9698 13996470 ~ 13997081 (+) False slc16a3a
TU29788 lncRNA downstream 113401 14100173 ~ 14101904 (+) True G20009
TU29726 lncRNA downstream 133413 14120185 ~ 14122057 (+) False smim22
TU29725 lncRNA downstream 133664 14120436 ~ 14122057 (+) False smim22
TU29727 lncRNA downstream 133664 14120436 ~ 14123128 (+) True smim22
XM_043233930.1 mRNA upstream 79665 13888940 ~ 13902589 (+) True crlf3
XM_043235797.1 mRNA upstream 174072 13796853 ~ 13808182 (+) True traf7
XM_043235798.1 mRNA upstream 174072 13796853 ~ 13808182 (+) False traf7
XM_043233953.1 mRNA upstream 212309 13767191 ~ 13769945 (+) True rpusd1
XM_043233954.1 mRNA upstream 212309 13767191 ~ 13769945 (+) False rpusd1
XM_043228898.1 mRNA downstream 9189 13995961 ~ 14002378 (+) False slc16a3a
XM_043228897.1 mRNA downstream 10114 13996886 ~ 14002378 (+) True slc16a3a
XM_043235003.1 mRNA downstream 42733 14029505 ~ 14036025 (+) False dus1l
XM_043235002.1 mRNA downstream 42773 14029545 ~ 14036025 (+) True dus1l
XM_043234945.1 mRNA downstream 70872 14057644 ~ 14062454 (+) False zgc:86896
unassigned_transcript_286 other upstream 68560 13913623 ~ 13913694 (+) True trnat-cgu
TU29613 other upstream 279901 13698574 ~ 13702353 (+) False rbbp6
TU29192 other upstream 994341 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 1094193 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 1453451 12519837 ~ 12528803 (+) False gtpbp1
TU29734 other downstream 62718 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 131695 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 268718 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 548407 14535179 ~ 14615408 (+) True G20148
TU30017 other downstream 632222 14618994 ~ 14622858 (+) True G20167

Expression Profile