RNA id: XR_006250478.1


Basic Information

Item Value
RNA id XR_006250478.1
length 3242
RNA type transcript
GC content 0.48
exon number 14
gene id gtpbp1
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12519837 ~ 12528803 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacatgacTCATTTTCTTAacaattttaaactaaacatttgAACGTGCATAGTGACAGGTGGCCAGACCTCGGCGTACTCTATTATCAGCTTAGCGCGCTATTGTAATACCAGTAATATGTCGTGATACTTGTTTATCTCGACGCAGCAGGTTTTAGCCTAGTGGCGAGCGGCGTTACAgtctgaatgtgtttgtgctgtaTCAGCTTACAATTGTCCCCCCAAAATCCGCATcgttttaaagttgttttagcTTGATTTTAAAGACTGCTGCCTCAGATATGGCATCAGCAACGACGACAGATCCGGGTTTTAATCCCGGTTCCATGGGTTTACCAGAGTCTGTGGTCCCAGCTAGCATGTTTGCTCCGGCGCGGGGATGCGGCGAGGATGACGGGGCGGAGGGCTTCGAGGACGGGGAGATGTTCAACGGCGAGGCCGTGGATCTCGGTATTGATTTCTCCAGCAAGcTAGCTCTGGTCAGTCCCAACGGGGAACAGTATGACTTGCTACTACGGCAGCTGCGTGAGAGGATGGACGAGGGCTGCGGGGAGACCATCTATGTCTTGGGGGTGGGTTCAGATGGAGGAGACTATGGCATGAATGAGAGTGATATGCAGGCGTCTGTGGCCACGGTAAGGTCCATGTGTGAACAGATTGAGGCAGACCTCATCCTGTTGAGAGAGCGTGCCGAAGCCGGCGGCCAGGTCAGAGATTACCTTATTCGCCGACGAGTGGGAGAAGCTGACTTCCTGGAGGTCAGGGTGGCTGTAGTGGGGAACGTGGATGCTGGGAAGAGCACTCTGCTGGGTGTGCTGACTCACGGAGAACTGGATAATGGACGTGGCTTCGCACGACAGAAGCTCTTCAGGCACAAACATGAAATGGAGAGTGGACGCACCAGCAGCGTGGGCAATGACATACTGGGATTTGATCAAGAAGGACAGGTAGTCAACAAACCTGACAGTCACGGAGGCAGCCTGGATTGGACCAAGATCTGCGAGAAATCTTCTAAAGTCATTACCTTTATTGATCTTGCTGGACATGAGAAGTACTTGAAGACGACTGTGTTTGGAATGACCGGCCATCTGCCCGATTTCTGCATGCTGATGATTGGAAGTAATGCAGGAATTGTTGGCATGACCAAAGAGCACCTGGGTTTGGCATTAGCTCTCAATGTCCCTGTCTTTGTGGTGGTTACAAAGATTGACATGTGTCCAGCTAATATTCTTCAAGAGACCTTGAAGCTCCTGCAGAAGATTTTAAAGTCTCCAGGATGCAGAAAGATCCCCGTCCTGGTCCAGAACAAAGATGATGTCATCGTCACAGCATCCAATTTCAGTTCTGAGAGaaTATGCCCCATTTTCCAGATCTCTAACGTCACAGGAGAAAACATGGACCTACTAAAGATGTTCCTGAACCTGCTTTCCTCCAGAAGCTCATTCAAAGACCACGAGCCCGCTGAGTTCCAGATAGACGACACCTATTCAGTACCAGGTGTAGGAACAGTAGTTTCTGGGACCACGTTACGAGGGCTGATTCGACTCAATGACACTCTGCTTCTTGGACCAGACCCTTTGGGCGCTTTCCTCCCCATCACTGTCAAATCCATTCACCGCAAGAGGATGCCTGTGAAAGAGGTCCGTGGTGGACAGACGGCTTCTTTTGCTCTGAAAAAGATCAAGCGCTCCTCAATAAGGAAGGGCATGGTGATGGTGTCTCCACGATTAAACCCGCAGGCATACTGGGAGTTTGAGGCCGAGATACTAGTTTTACATCATCCGACGACCATCTCGCCTAGATATCAAGCAATGGTGCACTGCGGTAGCATCAGACAAACAGCCACAATCCTCTCCATGACCAGAGACTGCTTACGAACAGGAGACAAAGCTACCGTACACTTCCGCTTCATTAAAACCCCAGAGTACCTGCACATAGACCAGAGGCTTGTGTTCAGAGAGGGAAGAACTAAAGCTGTGGGCACCATCACGAAGTTGCTTTTGTCAACAAATAATCAGCCGTCAAACTCTAAACCTCCCCAAATCAAGATGCAGTCAACAAAGAAAGCCCCGGCTAGAAGAGAGGATGGAGTGGCCCCGTCCGGCGAGGAGAGCGCTAGCACAGGGTCGCCAGCCGCTCAGCAAAACCTACCGCAACAGACAGAAATGGAGGAAGACCCTCAAAACAAAGAGAACAAGCCAAAGTCTGGAGGTAGAAGACGAGGAGGTCAGCGGCACAAAGGCAAACCTCAAAGCAACACCACAGTGACCCTCGCTGGTGCGGTCGGGGGCTGCTAAACCCCCCCTTCAAGTGTCCAGCTCACCCTCCATGTTTTACTCTGGCCTTTCACCTGCCCACATGGACCAGACCACTTCGATGATCAGGCATAAGAGCTCACAGAACCAACATGCACattgttttgtgaattttaatttattgtaagaCGTGCGTGCGTTCGTAGACTGTACATACCGTAGATATTGAGACCATAGGACACATATTGCATAGCGGTTCGGTTCTGGCTGTAAACGTCAACTAAAGAAGGATAAACTTGGAAGTCCGTTTCTTCTTGCTGAACGTGACATCACGTACTTGCTCTGTGGCTGTCATTCTTATCACCTTTTTTAGGATAATCCCATTGGAAATGATGTAAGGCTCTGGCGGCTGAACTCTTCGTTTAGCTAACAGTTTTTAAGGGACTTTTAACAGGACACACATTTGCGTCGAATTTGATTTAGCATTGTTATTGTGGACCATGACGACGAGAACCGGATGGTGGGTGTTATGACCTGAATTCATTGGGGGTTTGAAGACACTGTGACCGCAACGTTTGCTGGCAGCTAGTTTAGTGTGAAATGCGAATTGGCAATTAAACGCGCTTCGAAATCTAATCGCACTCATTGCTAATTACCTCGtattacagtttatttacaCTTCCCCCCCAGATCCTTGGTCAAGCTGAACAAATCGCTCGAGCGTTATCAGACCTGGACAGACTTGGATCAGCTTCTGGAAACATACTCTTTATCAAATAAGATGCTTCAGACTACCCAGTGAAATATACATGAActgtGATCTATAGGCCTTCAGAACACTTGCTGTAATTTCTTTCAGATGGTTTTACTGTTCATTGAGCTTTAGTATTCACACCCTGCAACATGATACCTGGACCATTCTCTGCGTTTACATGTGAAACTCATTTTTCACTAccaatatacaaataaactgaTGTTCACAATA

Function

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28784 lncRNA upstream 6116 12511926 ~ 12513721 (+) True G19326
TU28785 lncRNA upstream 6116 12511926 ~ 12513721 (+) False G19326
TU28700 lncRNA upstream 269840 12246208 ~ 12249997 (+) False LOC122341822
TU28736 lncRNA upstream 291317 12227935 ~ 12228520 (+) True G19287
TU28710 lncRNA upstream 384880 12132629 ~ 12134957 (+) True G19274
TU29145 lncRNA downstream 152455 12681258 ~ 12681565 (+) True G19579
TU29141 lncRNA downstream 154015 12682818 ~ 12686371 (+) True G19575
TU29234 lncRNA downstream 468414 12997217 ~ 13056733 (+) True G19656
TU29204 lncRNA downstream 477007 13005810 ~ 13096854 (+) True G19629
TU29202 lncRNA downstream 531357 13060160 ~ 13061606 (+) True G19627
XM_043235771.1 mRNA upstream 29775 12477842 ~ 12490062 (+) True mpp2a
XM_043235772.1 mRNA upstream 29775 12477842 ~ 12490062 (+) False mpp2a
XM_043235773.1 mRNA upstream 42565 12474069 ~ 12477272 (+) True pyya
XM_043229525.1 mRNA upstream 62928 12456009 ~ 12456909 (+) True hspb9
XM_043233702.1 mRNA upstream 204791 12303365 ~ 12315046 (+) True nbr1b
XM_043225909.1 mRNA downstream 132878 12661681 ~ 12676663 (+) False LOC122329583
XM_043225918.1 mRNA downstream 133483 12662286 ~ 12676663 (+) False LOC122329583
XM_043225889.1 mRNA downstream 133496 12662299 ~ 12676663 (+) False LOC122329583
XM_043225899.1 mRNA downstream 133733 12662536 ~ 12676663 (+) True LOC122329583
XM_043228192.1 mRNA downstream 149593 12678396 ~ 12679757 (+) True ier2a
TU28786 other upstream 6116 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 6116 12511926 ~ 12513721 (+) False G19326
XR_006249244.1 other upstream 206847 12303364 ~ 12312990 (+) False nbr1b
TU28690 other upstream 418985 12092603 ~ 12100852 (+) True LOC122342134
XR_006249731.1 other upstream 685913 11773201 ~ 11833924 (+) True kcnc3a
TU29192 other downstream 306578 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other downstream 358354 12887157 ~ 12888061 (+) False LOC122332158
TU29613 other downstream 1169771 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 1384820 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 1520687 14049490 ~ 14053032 (+) True G19973

Expression Profile