RNA id: XM_043235156.1


Basic Information

Item Value
RNA id XM_043235156.1
length 4760
RNA type mRNA
GC content 0.41
exon number 16
gene id mgrn1b
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9679898 ~ 9692637 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGATATGCTACAACCCTCTCGGGGTCGCCTCGCAACAACGATTTCCCTGTGTTGTGTTTTCACGAAGAAAACGGCTATTATGATTTAGAGGAAACACCAAGGACAGAATTACCCGCGTGTCTTTTATCTCGCATTTTATAACTCACTTTTGCGCGTTTATGTGGCCGTTCGCCTCTTGTTTTAGTGGTTACCAGTTCGTGACAGGCGAACAAACTAGCTAGGTGCTGGCTTGCTAGTCAGTTAGCCAGTGTGTGTCAAACCTGATCCAGCTGACTTGAACGCAACATCACACAATACTGCTGTACGAGACGCATCTGATCCGGCTCAGAAGAACTGAAATGCCCGTCAAACGCGTGTCATGTTAATTTGAACGCCTTGTCGATTCGGAGTTGTTGCTGTGATTACGCAGTTAGCTGACAGCCAGCcgtgttgctgttgttgtgtacattttaataaacggTGGTTTGTTCTGATCGGACTGTGTTGGAGAAATGGGTTCAATTCTTAGTCGAAGAATCGCTGGTGTTGAGGACATCGACATCCAGGCCAACTCTGCGTACAGATACCCTCCAAAATCAGGAAACTATTTTGCCAGCCACTTTTTCATGGGAGGTGAAAAATTTGACACTCCTCATCCAGAGGGTTACCTTTTTGGAGAAAACATGGATCTCAACTTTCTTGGTAACCGGCCGGTGCAGTTTCCCTATGTTACTCCAGCGCCGCACGAGCCGGTGAAGACATTGAGAAGTCTCGTCAATATCAGAAAAGACTCGTTGCGATTGGTCAGGTATAAAGATGATGCTGATAGTCCTACTGATGAAGGAGCAAAACCAAGGGCGCTGTATGGAGTGGAGTTCACCTTCGACTCTGATGCCCGAGTGGCCATCACCATCTACTGTCAGGCTTTTGAGGAGTTCTCCAACGGGATGGCAATATACAGCCCGAAAACCCCTGCGTTGGTCTCTGAAACGGTATATTACAAACGAGGGGTTAGCCAGCAGTTTACCCTGCCGTCCTTCAAGATCGATTTCTCTGAATGGAAGGAAGAAGATctcaacTTCGATTTAGACAGAGGTGTATTTCCCATGGTGATTCAGGCTGTGGTTGATGAAGGAGATGATTGTTTGGGACATGCCCATGTACTGTTGGCAGCATTTGAAAGAcATGTCGATGGCAGTTTCTCAGTCAAACCTTTAAAACAGAAGCAAATAGTGGACCGCGTCAGCTACTTGTTACAGGAGATTTACGGAATTGAGAACAAGAACAATCAAGAGACAAAGCCATCCGACGATGAGAACAGTGATAACAGTAATGAGTGTGTGGTGTGTCTGTCAGATTTGCGGGACACACTGATTTTGCCCTGTAGGCACCTGTGCCTGTGTAACTCCTGCGCCGATACTCTGCGTTACCAGGCCAACAACTGCCCCATCTGCCGACTGCCATTTCGAGCTCTTCTTCAGATTCGAGCTGTAAGAAAGAAGCCTGGAGCACTTTCTCCTGTTTCCTTCAGCCCGGTGCTGGCTCAGAGCATGGATCATGATGAGCACTCAAGCTCAGACTCTGTCCCCCCCGGGTTTGAGCCCATCTCACTGCTGGAGGCTTTGAACGGTCTTGGTGCTGTGTCCCCCGGCCTTCCGTCCGCCCCTCTGTATGATGAGATCAACTTCTCTGGGAGCCTAAGTGGAGAGAGCAGGCAGCTCAGCTCACCTGACCACTCTGGAGACAGCGGCGGACAGAAGAGCAAAGTCAGCAAGTCACCCGACAGCACTCTACGCTCTCCATCGTCACCCATTcaggaggaagatgaagaaaAGCTGTCTGAGATGTCTGACGCACAAGCTCACATGCTGCTGTCCAGCAGTCCAGCCCCCACTGAGGGTACGGCTGGAGAGGACGCCCCTGACTCACTGTCTCCTGAAGATGAGGATCGATTAAATTTGGAGGAAGAGGTGAACGACTGCAGCAGTGAACACAGCAGCTTTACCAAAACTGAAAGTGACCCACCTGGAGACCTGTCCCTCCCGGGACTGTCTGGCTCAATGGAAAGTCTGAGCACTCAGAGTACCTGCTGCTCCAGCCAGCCGCTCCTGGGTCCCTCAAGCCGTTTGCACATGGACGATGATGAACTGGATGTTTAACCATTTTTCCATCTCCTCCTTTGTACAGCTCCATATGTCTCCACATTGCAGTTTGGTGCACTTCAATTCCAGTATGCCACTTTGAACATGATCGACTCTTGTTCCAGGCCTTTCGTTTTTTTAACATATGGGCCGAAGAGCTCGTTCTGGTGGTCTGTCATATTTCTTGTGCTTGGGTTTTAGGGCTCTATTTGACCAAGTTGCTTCACCCAAAATGATCTTTACATTATTCTAACTGCATTATTATCTTTCTTCCATTAATCACTAAagaacatttattcatattggaagttgattttaaagtacttaTTAGGCTTCAGAAAACAGTCAAATAAAATTAGTCCTTACTACATATCAGATAATCAAATTTTCAGATGCcatatgaaatatttgtgatGAACGCACTGATCTCTAAACCGTCTAATAATGTCCCCCTCAAATAGAAAATGCCTTCATGGCTCTTTTGGAGCTTCACACTCCGTCGTTTCATGGTAAAagataaaatacagattaaagGCCGTTGCACACTCCAAGtccaaaatatttgcatgttttttttttcatattcgtcatcctttttttttttatcaaaatgcaAACTACAGATGTGAAAACACAGGAAATCGAACctgatcagttttttttttatgacagacGAAAGTTGGAGGCAACGTGCGGtcgaattaatttttttattatgcaaaaatcTCTGTGCAATTACCTTTTAGAATGATAATAAATagattacaattttctttagtGAAATGGTTGATGGTTGTTGCAGATGAATTTCCTGCTGATTTGAGGACACACtcttaaaagtcttttttttgtgtgttaattagcattttttgttaCGTGAAGAACTTTTAACATCCCAGGAACCTTACCATTGCACAAAATGTTCTACATAGTGGTCGTAAAAGGTACTCTGGATTATAAAACTCTTCTTCACACCAAGAAAAACTATGCTGTTTGCTGAAAGTTTTGTTTTGAGAAACTAatgctgtgtatttttaagagcgTAGCGGGTAATTCTGAATATAGAGCTTAGATCCGGGGCTTGATTATAACACTAATAAACACACAGCAGCTTGGTACGAAATAATAGACAAAGCacatctcaataaaaaaaaaacatttcaggatATATGTAAAACTCAACAAACGATCATGTTTTAAACTAACGAGTgaataatacagaaatataattgtaactgtgcatttgaaatgtttttagtaaGTGCTTAAATGTCCTGaacttatttttgtgtgtgctaACTGAAGATGAGCGTTCAGAAAAGCacttctgaatatatatattcctgatttcaaatgtaatatttatagtgATCAAATGCTGTTGGGAACGGCGGATTTGTTGCAGTCTTAACGACCAAATATCGTGCGGTCTAACAGTGCTTTAAATGTGCTTGCTTGTTCAGCTGTTTATTCTAAGGACTAAAAAAAAGCCATGGTGGACTCTCTTTACCTCTTTATTTGCTcgttattattgtaatatgattttttttttttttaatatttaaacgttTGAAGGCATTCCTTTCATGTGTCGGTTCAGATGCTATTGAATCGTGACGACTTTGTGAATATTTGATAGGTTGGTTGTATTTCTTCGCAGCTGGACCCCGTTTGTAAGAAAGGAAATCTCATCGAACAAGTCACAGAAAGCATGAAATCTCATCGTTCTCCTCAAACATGCAGATATGCGGTGTCTTGTAGCATTATGCATAGAGGTTCATGTGCCTTTAAAGAACAAAGCAAGCGTCGCTACAGCTTTGGCTCATAGCTGTGCTGTTCTTGTGTTCATCGGCTGTAACCTTTAGCCTTGACTACATTTATGCATTAGATGTGAGACTGATGTTTTCGTTTGTAATGTCCATTTTGGAAAGCAGGCCATTTTGAACTGATGTTCTGTAGGTCGAAATGTATTGCTTATACAAATTTTGCTATACTGTAATACTTAACATGATTTTTGTTACATCATCCGTTAATACTGATTAAGCTGCTCTGTacatgtattttaatcaaaggtaaaaaaaaaaaaaaaaaaaaatctgattattgATGGTGTTGAATTAATTGCATGGTAATATTGATGTAAGATTTATCACTGCTCTggaatatgcatattatttatttcatcaaataatgtgccatttcaattaaattttccACTGTGCCTTCTTGTTCCTCACTTGTGAGAAGTGCATTTAAAACGTACTTTAAAAGAGAATAGTAATTATGAAAGCAATATACTTTACTAGgtaatatttcaaacataagTGTGCATCTGATGTATGATTATTATGGAACAAATTGTTGTATATAAACTACATGAACGTTACATCTTAAATGTAAGAAGCTAAAACTTTGCTTTTTGACTCATTTTAGCAGCACTTAATCAAAATATGTGATTTTGTCATTCATAATACAGCATTTCCGCATGTACTTTGGTCAGTGGCACTGAAAATATAAAGTTGTTCAAGGcaactgtaatttaataaaccattttaCTGCTGTGTGCTGAAACTACAATGCACTTCAGTATTCTTCAAAACGCTTTCTGAaacttttgattaaaaattacttcttaaaaa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27582 lncRNA upstream 76834 9602642 ~ 9603064 (+) True G18470
TU27569 lncRNA upstream 103996 9574881 ~ 9575902 (+) True G18458
TU27568 lncRNA upstream 103996 9575241 ~ 9575902 (+) False G18458
TU27567 lncRNA upstream 104204 9575241 ~ 9575694 (+) False G18458
TU27566 lncRNA upstream 105409 9574289 ~ 9574489 (+) True G18457
TU27622 lncRNA downstream 82683 9775320 ~ 9784458 (+) True G18502
TU27627 lncRNA downstream 161966 9854603 ~ 9859173 (+) True G18507
TU27641 lncRNA downstream 173149 9865786 ~ 9943153 (+) True G18517
TU27691 lncRNA downstream 218320 9910957 ~ 9911612 (+) True G18549
TU27728 lncRNA downstream 341504 10034141 ~ 10103461 (+) False G18574
XM_043235722.1 mRNA upstream 7094 9667567 ~ 9672804 (+) True LOC122341977
XM_043233746.1 mRNA upstream 13293 9656552 ~ 9666605 (+) True icam3
XM_043235558.1 mRNA upstream 88607 9588010 ~ 9591291 (+) True eif3g
XM_043235559.1 mRNA upstream 93680 9582374 ~ 9586218 (+) True p2ry11
XM_043235555.1 mRNA upstream 97513 9577725 ~ 9582385 (+) True ppan
XM_043233977.1 mRNA downstream 312 9692949 ~ 9697915 (+) True aanat2
XM_043235218.1 mRNA downstream 62544 9755181 ~ 9761184 (+) True mpg
XM_043235569.1 mRNA downstream 85855 9778492 ~ 9779290 (+) True hbaa2
XM_043235166.1 mRNA downstream 92645 9785282 ~ 9786123 (+) True LOC122341659
XM_043229144.1 mRNA downstream 96718 9789355 ~ 9790164 (+) True hbbe1.1
TU27323 other upstream 494238 9184528 ~ 9185660 (+) False LOC122341719
TU27325 other upstream 494317 9184528 ~ 9185581 (+) False LOC122341719
TU26907 other upstream 1116522 8260084 ~ 8563376 (+) False LOC122342110
TU27599 other downstream 1995 9694632 ~ 9696559 (+) False aanat2
TU27611 other downstream 47159 9739796 ~ 9749880 (+) True G18491
TU27625 other downstream 106178 9798815 ~ 9799755 (+) True hbbe1.3
TU27725 other downstream 333181 10025818 ~ 10034467 (+) True G18574
TU28036 other downstream 1060122 10752759 ~ 10781853 (+) False kcna7

Expression Profile