RNA id: XM_043235158.1


Basic Information

Item Value
RNA id XM_043235158.1
length 3587
RNA type mRNA
GC content 0.50
exon number 5
gene id cbx4
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25327720 ~ 25333865 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCTGGCAGCTTTCGTGTTGTGCCGCACGTGATGGCGGGGTGATATACGGCTGAACCGCAGCTTCGTTATTAAAAGGTAAACTTCGGCTACATGCCATCTATATTCGCACGACAGCAGGTGTGGACCCAGCGGTCCCCGTCGTTAACATATTCGCCCATTTTCTGTTTACTGCAGCGGGGTGTGTTCCTCCGAGGAGAAATGCGGCGCGACGATCGATTCGTCTTCATCGACACGCACTTTCCGCCCGCGCAGCGCGTGACACGTTGCGTTTCCGCGCGGACGTCTCAGCGCGCGCGTAACGAGCGCAATAAAGCCGCAAGATTCGGGTATATTTGCGCTTTCTTTTTCATGGCCATATATGGAGATCAGATCGGCCGTTGACGCGCCAACCCCGCTTTAACCCCTTAGCCgctgaattttattttctggCAGCCCAATAATCGCAAAGAAGAAGGCGTTATAATCGACGCGCTGCGCGTGCCGCGATTAAAACCGACAGCCGTACCTCGTCTTTCTGTACGGTTTTTGATTATAACCGAAAACATAGGTGTTACTGCGCTCAGCTATTAATGCAGGCTTAATTGCCTTCTGGCGTTAAACTGAGGAGCCTGTGATAGAGCGACTCCTTTACGCGACAGATTTAAGAGATGTACACAGGTGTTTCGTCTCTATGCGGTGCCTTTCAGCGGCGTTAAAGCTTTGCGCTGGGGATGATGGTTAATTTACCTATACTAGCGATAAAGGTGCCTCGTGACAAGTTTAGAGACGCAAATGCAAGTGTTTCGACTCTGTAGGGTTTCTGTGATGGTTTCGCGCGGAGggaaaaacaaagaatgctttttaAAGGATGCAATGGCATCACGCTGCAGGATGCAGAGACAACCGCAAGCCGTTTCCAACACATAACagggaacaaaaataaatctgtatcATTTTTGGCTGTCAAACGCGTTATAACTATAGCAGGCGCCGTTCATAAACACACTACAGCTTTATATTCTGCGCTTGGCACGGTCCTCGCCCCCCCTTCCTCGCGCGCTGACGTCACGCGCCCGCCTCGGCTCCGTGCACGAACTATTTCGTGTAGTAGCGCCAGCACCCGCGAGCTTCTCCGGCGCCCGCCGCTTAACGTGGAGACAAATACGAGGGCGAGAGGAGGGGTGAGAGGGACGAGGCTGATCTCGGGCCACAGCGCGGGGCGTCGCGGTGTTGTCGAGCCGGTGGTCTTGAGACGCGCGGCGGAGGCGGCATGGATCTACCTGCCGTCGGGGAGCACGTCTTCGCGGTGGAGGGCATCGAGAAGAAGCGCCTGCGGAAGATATAACACATGGGAACCCGAGGAAAACATTCTTGACCCGCGCCTTCTTGTGGCTTTCCAAAACAGGGAAAGGCAGGAGCAAATGGTGGGATATCGCAAAAGAGGGCCTAAACCCAAACACTCCCTCGTCCagCTTCCTGCGTTTGCTCGTAGATCAAGCATCCTGGGTGGTCTCGAGGACACCTTATTGGATGAAGAGAACCAGCCCAAAGTGGAGCCCCTCCAGATCCACCGCTCTCGGCCGCAGCACTATCAGCTCAACAGCAAAAAGCACCACCAGTACCAGCCCAGCTGCAAGGAGATCTCCGTCGAACAGCATTCGAGTGGGAAAAAGAAGCACTTCTACCAGCTGAACAGCAAGAAACATCACCACTACCAGCCGGACCCCAAGATGTACGACACGCCACTCACGGGACCCAAAGAGGTCAAGGTTCAAGACCCTTCCAACAAAAGCTGGAACCTCCCTTCAGCCCTGCAACAGAAGTGGATTCGGAACAAAGACACGGGCTGCTTGAGTAAAGTGAAAGATCTGTCCATCGAGTTCAAGAGCCTGCCGGATAACGCTGACAAAGCGGAGCGGGCGCTCAAGACGAGCGCCAAAGAGTTTGCCCTTCCCAACGGCATCAGCAGTAAGATGAAAATAatcaagaacaaaaacaaaaacggaCGGATAGTCATTGTAATGAGCAAATACATGGACAAAGGGGTGCACTCGTCTAAAGTAAAAAACAAGGATGTCTCTCAAGTGTCTAATACGGACAATCTGTCTGAAGGTGAAGCTTCAGGAGGCGGCTTCATCGAGAACACCAGCGCGTTTTCTAACAAGCACTCCATCGAAAAGGCTGAACTTCCAGAGCACACGCCTACAGAGACCGAACAAATAGTGATCGATTTATGCGATCAACCGAACTCAGAGAAAGCTGCCCCAGCCGACATAAACAGCGGACTCGGTCACCGCAAGAGGAACCTCTCGGAAGCCGACGAGGACGTGAGGAACTGTAAGCGCATCTTCAGCTCCAGGAGCATCAGCGCTCCAAACACGGTGCTCTCCTCTCCTCAGAGAGAACCTATGAACCTGCATTACACAGGCAGCCTCGCCGGCAGAGCCTGCAGTTATGACTTTAGCGACACCATTCCCGAAGAGCCCATTGATTTAAGTTGTGGTCCGACCAAAGCTCTTAAGCCGTTTCCCGCCGCGGAAAAGGTTTCGGGAAGCTCGGCTCAAGTGGAGAAAACAACCAGCCACGTCAGGCCGTTTGTGGGGAACGTTATCATCACCGATATCACCACGAACTGCTTAACCGTGACCTTTAAGGAATACGTTCAGGGATAGCGTCCACGCGGATCATTCGGTTCAATCGAAGTGACTTGTGACAGATGCACTGATCATAGCCATTCCTGACAACACGGGGAAACATCCAAGCAAGCAGGGTGCGTTTGTTTAAATGACTGACGTGTGCTTTCTAACGCATACCATTGAGACGGTTGACGTTTTGCTGCTGTGAAAACGGAATTGGAAACCCCATACTTGTACAGCGTGTAATGTAGTTTATAATTCGAATGCTACCTGAGGAAACACAGCGGCCTATTGGAGAAAGCACACTGGTCAAATTGAAGAATTCGTTAAAGTCGAAGTTTATTGCACTTACACTCACACGTTTCGCCGTTCATCCACGCCgtggattgttttttttgttttttttgagatgTACATATAACTGAGATCTATACGTTTGGAAAGGTGTCGTCATACGTGTATATGACCGTAccttttaaatagttttggttTTGCTGAGCTCTTTTACTTGACTGGATTTCCAGATGCTGTTGGCCTGTGAGGTCTTCCTGTGCAATGCTAGATAAACAACCGGTTTGTTCGGCGTTCCCTCTCTGTAAGACGTTTAAGTTGCACTTTATCGTCTCCTGGATCTCTTGTAGATAAGTTCGGTTTGAAAACAACAATGATCAATAAAGGTTTAACTTTGCGGAGTGATTCTGTAACAGCAGTGTGACTGTGGAACATGCGAACCGTCCGGAGAGTGAACGTAAGATCGATGCTTACAGTGTAATGCTATAGATTACGTATGAATTGTAATCGATTTACAGTCAATGCAATGTACTGTAGGTAGACCTTGAGATGTACAGGATGTAATGTACCGGCTACACCACGCCATTTATATGCATATCGTTTTATGCATACTATCCTTTGAATTGTCGGTTTGAAAACGCTTCTCGAATCTTGAATAATAAACGaatgatttgtttta

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34210 lncRNA upstream 60610 24957311 ~ 25267157 (+) True G23031
TU34190 lncRNA upstream 237333 24730359 ~ 25090434 (+) True G23027
TU34230 lncRNA upstream 239797 25079692 ~ 25087970 (+) True G23044
TU34188 lncRNA upstream 517804 24721526 ~ 24809963 (+) False G23026
TU34184 lncRNA upstream 517804 24754538 ~ 24809963 (+) True G23026
TU34290 lncRNA downstream 34412 25368277 ~ 25374497 (+) False arhgap17b
TU34295 lncRNA downstream 45363 25379228 ~ 25382913 (+) True G23077
TU34296 lncRNA downstream 58653 25392518 ~ 25394254 (+) True G23078
TU34258 lncRNA downstream 78053 25411918 ~ 25447270 (+) False G23061
TU34264 lncRNA downstream 78053 25411918 ~ 25447270 (+) True G23061
XM_043235176.1 mRNA upstream 19333 25287754 ~ 25308434 (+) False tbc1d16
XM_043235177.1 mRNA upstream 19333 25287757 ~ 25308434 (+) True tbc1d16
XM_043235178.1 mRNA upstream 21281 25287754 ~ 25306486 (+) False tbc1d16
XM_043235819.1 mRNA upstream 40842 25277792 ~ 25286925 (+) True gaa
XM_043235810.1 mRNA upstream 164906 25106181 ~ 25162861 (+) True grin2ca
XM_043235162.1 mRNA downstream 2320 25336185 ~ 25339891 (+) True cbx8a
XM_043235730.1 mRNA downstream 12919 25346784 ~ 25374498 (+) False arhgap17b
XM_043235729.1 mRNA downstream 12920 25346785 ~ 25374498 (+) True arhgap17b
XM_043235731.1 mRNA downstream 12921 25346786 ~ 25374498 (+) False arhgap17b
XM_043235732.1 mRNA downstream 12921 25346786 ~ 25363692 (+) False arhgap17b
TU34203 other upstream 341850 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 516190 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 517804 24721526 ~ 24809963 (+) False G23026
TU34113 other upstream 797204 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 878478 24446878 ~ 24449289 (+) True G22953
TU34266 other downstream 78053 25411918 ~ 25447270 (+) False G23061
TU34263 other downstream 111434 25445299 ~ 25447270 (+) False G23061
TU34364 other downstream 242111 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 279371 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 279409 25613274 ~ 25615293 (+) False LOC122336634

Expression Profile