RNA id: XM_043235192.1


Basic Information

Item Value
RNA id XM_043235192.1
length 2548
RNA type mRNA
GC content 0.47
exon number 2
gene id s1pr5a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24614599 ~ 24618241 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGACGAGAAAAGGCGAGCGCCAAGGCCAGCCCACTTCAGGACGAGGCTCGATCCCGGGTTCGGCTGGCGGCCGGAGCGCGCGTCAGTTGTGCGCGGGACACGGCCAGAGGTAGTGCGGCGGAGGAGGGTGTTCGTTTCGTCGTCCTTAACTTCATCTttcCCTCTGGTGGCTTTTGAAGATATAACAAAGCTGAGCACCAAGAAAGATAGAAGTGAAAACATCAACTCAAACGAGCCTACGAGGATTTATTGCTACCGTGTTAAACCCTCCTGAGAGTTGCTTTAAGTGCTTTGCTGGAATATGGCAATAAGAGGGACTACAGAGATCCTTAAAACCCGTCTTTAAGGACAGCAGAAGAAACAGGAAGAATGGAAGCCTCATACGCCGCTAGCGCCGCCGTTGCTCCGACTCCTCCACCAATCACCTCGTCCCCAGGTTACCTGCTCAGGATGTTTCGGGAGTATCAAAGCAACGCCGTCATCATGGCCCATTACAACTTCACCGGAAAGCTGAAAGAGAACAAATACCGAGACGGACTGAAACCCGAGGCCATCGTGTTTCTCATCATCTGTCTTCTCATTGTGGTGGAAAATGCCATCGTTTTGGTGGCAATATGGAAGAACAAAAAATTCCACATGCCCATGTACTACTTGCTGGGCAGCTTGACGCTCTCAGATTTGCTCGCAGGCTTCACCTACATGGTGAACATCGTGACTTCTGGCGCAAACACTCTCAAAATGACTCCAGTGCTGTGGTTTCTTCGAGAAGGCGGCGTGTTTATCACACTTTCTGCGTCTATCATCAGTCTCCTCGCCATCGCTATCGAGCGACACGTCACGATGGTCCGGATGAAGCCGTATCAAGGGGCCAAGCGAGGCCGGATGTTCGGTTTGATCGGCGCGAGCTGGCTTCTTTCGGTGCTCCTCGGCATTCTCCCCATCATGGGCTGGAATTGCATCGGACATCTGGACGAATGCTCCACCGTCTTGCCTCTTTACGCCAAGAGCTTCATCCTCTTCTGCATTACGGTGTTCACCCTGGTGCTGATGTCCATTGTGGTGCTCTACATGCGCATCTTCCGCATTGTGAAGTCCAACACCCAGCGGTTAGGCTGCGGCCCTCAGCGCAAAGGTCTGGCCAGGAAGTCCCAGAAGTATCTGGCTCTGCTGAAGACGGTCACCATCGTTCTCGGGGTCTTCATCGCCTGCTGGTTGCCTCTCTTTGTGCTTCTTCTGCTGGACTTCTTCTGCCCGGCTCAGGGCTGCGAGGTGCTGTTCAAAGCGGACTACTTCCTGGGTATCGCCATGATCAACTCGCTCCTGAACCCCATCATTTACACCCTGACTAGTAAAGACATGCGGAGAGCCATTCTGAGACTGGTCTGCAGCTACTGTCTGATATCAAAAGATGGACAGGTGAAGAAGTTTGGCATGCCTTTCCTGGACTGCAGCACCAGTAAGGTTGAGGTGCCTTCACAAAGGCTGGAGGGCTTGGAGACGACGGTCTCTTCTGGGAACTTCACACCATCCACTATTAAAGCTATTTACCCGAGGATACTGAAGAGCTGAGGAAGAACAGCGCATTGAGACGATGCTGCCTTAATGGACAGTTCAACTACTTCATGCTGAATATTTGTAAAACCGGACAAGTACGAGGTGCTCGGAAATGAATTCAGAAGACGTTGGATGAGATGGAAGTCATAAATGTTGCGTTTTGGACTATAGAGTAGAAGACTTGGATTCCTCCGCATGCATTATAGCAAACCACGAGGTTTCCAGAAAGCGTGGTAGACCAGACaagatttcttttttactgTGATAAATACCAGTGTTTAAAATGGATTGTCTGTGGGTCAGACTCGCATTACAAGAGCTGCggtgcctttttaaaaataggagGTTCAACGGCAAACAAAAAGCGGTTATACAGCTGAACGTGATGCATTGTGCAAATGTGCTCTGCAAAGAACTCCTCAGATGTTATACGAGTCTCGCGtgagcattttcaaaaataacgAGCCGGTGCTGTTCAGAGATTTTGTGGTGAAAACACGCACAGAAAATGACTGGTTGGTGCCTCCACACACAAGCACGTTAGTCCTCGGgcattttaacaatacatacgcaggcaaataaaaactataaggCAAGCGACTATTTTTAAATCGGTAAATGTTTCCTTTTATACTTGTACTTTTGGGTTTTCATGTTAAAGCTCcccttaaaaatgtaagtatgctatacttttctatatttttggCTTATACAGGAAATATAGTTTCGGAGACGCaagctatataaatattgtatattttataaatattgtgagaaagtttttatgttgttgtatGGAATGGCATCGTTCATGTGTAGCAGTCTGCAGTGATAAAAACAGCACTGACATTCAAGCAATATTGCATTTCTGTAAAACTGTCTGTGTACTGAAAACAATGCATTcgtgtgtttaaatgtattttgtcgATCCTAAATTATGAgccttaaaaacaaatcttttataagtgcattaattaaaagtgttttcttGCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34158 lncRNA upstream 1848 24612526 ~ 24612751 (+) True G23011
TU34151 lncRNA upstream 50704 24563246 ~ 24563895 (+) True G23004
TU34152 lncRNA upstream 51472 24562812 ~ 24563127 (+) True G23005
TU34149 lncRNA upstream 56338 24557711 ~ 24558261 (+) True G23002
TU34132 lncRNA upstream 164729 24268426 ~ 24449870 (+) True G22988
TU34167 lncRNA downstream 15916 24634157 ~ 24673712 (+) False G23014
TU34160 lncRNA downstream 22339 24640580 ~ 24650704 (+) True G23013
TU34161 lncRNA downstream 22339 24640580 ~ 24650704 (+) False G23013
TU34188 lncRNA downstream 103285 24721526 ~ 24809963 (+) False G23026
TU34190 lncRNA downstream 112118 24730359 ~ 25090434 (+) True G23027
XM_043229063.1 mRNA upstream 52010 24558746 ~ 24562589 (+) True si:dkeyp-69e1.8
XM_043235408.1 mRNA upstream 57487 24549227 ~ 24557112 (+) False hmgxb4a
XM_043235409.1 mRNA upstream 57487 24549637 ~ 24557112 (+) True hmgxb4a
XM_043235410.1 mRNA upstream 57487 24550762 ~ 24557112 (+) False hmgxb4a
XM_043235411.1 mRNA upstream 57487 24550851 ~ 24557112 (+) False hmgxb4a
XM_043235817.1 mRNA downstream 149388 24767629 ~ 24769271 (+) True LOC122342023
XM_043235813.1 mRNA downstream 153050 24771291 ~ 24781610 (+) True il12rb2l
XM_043235820.1 mRNA downstream 197632 24815873 ~ 24828439 (+) True LOC122342030
XM_043235818.1 mRNA downstream 213184 24831425 ~ 24833956 (+) True LOC122342024
XM_043234713.1 mRNA downstream 234140 24852381 ~ 24855237 (+) True LOC122341374
TU34113 other upstream 84036 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 165310 24446878 ~ 24449289 (+) True G22953
TU34141 other upstream 175136 24434055 ~ 24439463 (+) True G22996
TU34076 other upstream 517440 24095024 ~ 24097159 (+) True G22958
TU34052 other upstream 562736 24050738 ~ 24051863 (+) False LOC122342055
TU34183 other downstream 103285 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 103285 24721526 ~ 24811577 (+) False G23026
TU34203 other downstream 365108 24983349 ~ 24985917 (+) False LOC122342019
TU34266 other downstream 793677 25411918 ~ 25447270 (+) False G23061
TU34263 other downstream 827058 25445299 ~ 25447270 (+) False G23061

Expression Profile