RNA id: XM_043235239.1


Basic Information

Item Value
RNA id XM_043235239.1
length 1975
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC122341695
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14397150 ~ 14401894 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCAGCTCTTTCCCGCTGAAGTGGTGGAGGCCCGGGCCCTACTGGCCCCTGTCGATCCTCCTGGCTGCCCTTCGTTCCCCGGGGGTCTGCTGGCTGGGACGCTGTGGGGACACAagcggcgtcaggaacaggacCAAAGACTACGGGCCAGACTAAGGGAGGAGGGAGCTGTGGTGATGTCAGCCATTTTGGAGCGCTGGAAAGCCCTGGCGGCATACAGTCGCAGAGACAGCATGGCTGCCTATCTCACCATCGCCCGGCAGTGGTCAGGGTTTGGCTGCACGCTCTATGAAGTAGACTTTTACATTAGCTCGACAGGAAGCTTCTCTCAGAAGTTGTGGCTGGGCGTGGCAGCTtcctgtgtgtctctgtatcGTCAGGGTGAGGCTGAAGCACTGGAGTCTCTGCCAATTGGTCAGATCTGTTCCTATGGCGTCTCTGATAGCAACACATTCAGGATCACAGCAGGAGACCGAGATCTGCTCTTCGAGACCTCCAAGctgacTGAGATCATGCAGCTGATGAATGCTTACTTCAGTGCCACCCGTCGCCAGCTAGGCAAGGATGACTGCATCTCCATGGAGACAAACCCTAAGCTCCACCCCTCCCTACTTGAGCTCCCCTCTCACCCGGTGTGAAGAGCGAAGGActcgtgcacacacacacacacacacacacacacatacacacacacacggatacTGACTGATGCACACGTGCACATGCAGTCTTGACCGAATGCTTCCCTGTGAGGAGCTTTTGCGAAGAGAATGAACTCAGTTGAGACTGAAAGGAGCAGATGCTGTGGAAATGGAGGAGGAGTGGAAGGCGTCCAGGGAGCCACAAACAGCAGAGCAGGTTCAGGAACTCACTTGCTACACCGCCAGCCAAATCCAGAAAGGACACGGGGCCCTCAACCGGCCCTTGCCACCTGGAAGATCGCCAAATATCACAGAGAGCATAATAGcctgaaatcattttttaagcagtatttttgccttgttttttaaatgtttaaacatccttaaaacaacattaatttatttttatttgctttggaaATGTTAATTTTCCTTAAACTCGTCAAGTATTTAGACTAATTGTGCGACTAACTTTtcaagaaagtgtttttttttttcttattttgcatCTCATGTTAATTTACCTTGTTTAAAGGATGTTGCTTTTTTATtggaaaacatgacaaaaatatatatttttttttttttttgcttcgtgGTAATGTCTTTTGTATTTCACTGAAGGAAGTCAAGGCAAACACGCTGCCACTGCAGTCACACGCAAACACTCGCTCAGCTTTAAACGTTCCTTTCCAGACTCCTGGCTGGATCGCCATTAAACTCATTCATCAAACCGTACCTGACCTTGAAGTGACAGCAGGTGCGTGTCACTTTGACGTCGACCTTCAGAACTGTCCTATACTGAAGCGACAGATTTGAACATTTGAAGCTGTAGAAACCAAAGGATCCTTAGCTCGTCTGTATGATGTATTTGTGAAATGCTTTGAGCCCGACCTGGTGCTGCTTGACTGTGCTGTTAGCTTACAGTAACTCTGCACTGTGCTTCCTGTAGCCATAACAGCCTCCGATCTTCAGATCCGGTTAAAACCAACTAACTTGTGTGCAGCCTggacattttccaaaaatggaATTGGTTCAAACCAAGCTTCCCAGACCTTTTGAACATATTTTCAGACACTGAAGATAGACAAATAATCAACACTATTGATATGCATCATTGTCATCCCGTATTCTAAAGATGGTACATTTCCAtttaagggatagtttaccccaaaattaaaCCGTAGTCGTCATTTATTTGTCCTTCTTTCAtcttgttgaacacaaaagatatatttctgatattttcatatttcgaaagtaaacagtcaaaaacagcattactttatatatatatatatatatatatatatatatatatatatatataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29948 lncRNA upstream 92257 14303150 ~ 14304893 (+) True G20113
TU29877 lncRNA upstream 246192 14148464 ~ 14150958 (+) True G20057
TU29727 lncRNA upstream 274022 14120436 ~ 14123128 (+) True smim22
TU29726 lncRNA upstream 275093 14120185 ~ 14122057 (+) False smim22
TU29987 lncRNA downstream 31811 14433705 ~ 14457906 (+) False G20146
TU30016 lncRNA downstream 215368 14617262 ~ 14618834 (+) True G20166
TU30018 lncRNA downstream 224898 14626792 ~ 14629316 (+) True G20168
XR_006249714.1 lncRNA downstream 262948 14664842 ~ 14667052 (+) True LOC122338121
TU30044 lncRNA downstream 518351 14920245 ~ 14969285 (+) True G20180
XM_043234669.1 mRNA upstream 5 14369095 ~ 14397145 (+) True LOC122341305
XM_043235863.1 mRNA upstream 69420 14313028 ~ 14327730 (+) True ezh1
XM_043235862.1 mRNA upstream 69420 14313030 ~ 14327730 (+) False ezh1
XM_043235865.1 mRNA upstream 69420 14318309 ~ 14327730 (+) False ezh1
XM_043231305.1 mRNA upstream 123841 14264847 ~ 14273309 (+) False abcc1
XM_043234671.1 mRNA downstream 18368 14420262 ~ 14433592 (+) True LOC122341307
XM_043235900.1 mRNA downstream 38935 14440829 ~ 14455243 (+) True fmnl1a
XM_043230452.1 mRNA downstream 182236 14584130 ~ 14592582 (+) True wnt9b
XM_043235827.1 mRNA downstream 201280 14603174 ~ 14608724 (+) True gosr2
XM_043235121.1 mRNA downstream 241071 14642965 ~ 14657476 (+) False map3k14a
XR_006248644.1 other upstream 129359 14255490 ~ 14267791 (+) False abcc1
TU29797 other upstream 277580 14118467 ~ 14119570 (+) True G20015
TU29734 other upstream 344118 14049490 ~ 14053032 (+) True G19973
unassigned_transcript_286 other upstream 483456 13913623 ~ 13913694 (+) True trnat-cgu
TU29613 other upstream 694797 13698574 ~ 13702353 (+) False rbbp6
TU29992 other downstream 133285 14535179 ~ 14615408 (+) True G20148
TU30017 other downstream 217100 14618994 ~ 14622858 (+) True G20167
TU30025 other downstream 263025 14664919 ~ 14671568 (+) True G20172
XR_006250545.1 other downstream 263592 14665486 ~ 14665570 (+) True LOC122342199
XR_006250536.1 other downstream 263944 14665838 ~ 14665922 (+) True LOC122342189

Expression Profile