RNA id: TCONS_00011100


Basic Information

Item Value
RNA id TCONS_00011100
length 689
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_005178
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 8573933 ~ 8575025 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTTcggtcatttctgttaagcaccagaacacaatggcaaatcagagcTGTATAAGAACGCGCACAAATGTTAACgggaaatgaacatttttaaaatttcggTACAGATTGGTagcgaattccagtattgtgacaacactaattTAAAGTCATTTACTTCTCTTTTCATTTCCATTTTAGTGCTTATTTTGAATTGATGTGTATCATATCGACCACGATTGCATTCCTAAATTCGCCAACGACCTGCAAAGTAATTGGCTGTTTGGATATTTGCAGTTTCTGATGTCTTGATGAGAATTATCTTCTGAACAGGGATTAAAACAGAAATCAACCTGCAGCTTTTCTGTGGCAGGAgatggcatcttcaaatttcccaGCGGCCAGCAAGCGGTCTGCCTTCCTGCACTGCTGATGGGCCTAAAAGAGAGGATACAGCTCTTCACATGACTTCATCGTGATGGGTTCAGTTAGCACTGAAAACTAATTACAGCACAGATAAATGACATTAGCCCTGATTAACTCTAAACCTACATCAAGTTCTAATGGAAGTTCATCTAATCCTTTCAGTCACAGTGAAAGTCTATTTAAAGCGAGCTGTCAATACTTCTGTCATCCCTCCAACACTGTACTGTACTCAGATCTACTTACTTTACAGTAATGGTTCATCAAATATCATCTTCAAACCCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011099 lncRNA downstream 93225 8477459 ~ 8480708 (-) True XLOC_005175
TCONS_00011098 lncRNA downstream 179288 8388330 ~ 8394645 (-) True XLOC_005173
TCONS_00011096 lncRNA downstream 500670 8003509 ~ 8073263 (-) True XLOC_005170
TCONS_00011097 lncRNA downstream 527460 8039984 ~ 8046473 (-) True XLOC_005171
TCONS_00010800 lncRNA downstream 563373 8003509 ~ 8010560 (-) False XLOC_005170
TCONS_00009995 lncRNA upstream 15904 8590929 ~ 8595364 (-) True XLOC_005179
TCONS_00010000 lncRNA upstream 421010 8996035 ~ 9087566 (-) False XLOC_005182
TCONS_00010003 lncRNA upstream 488650 9063675 ~ 9084568 (-) True XLOC_005182
TCONS_00011101 lncRNA upstream 652361 9227386 ~ 9228629 (-) False XLOC_005185
TCONS_00011102 lncRNA upstream 652361 9227386 ~ 9237794 (-) True XLOC_005185
TCONS_00009992 mRNA downstream 62748 8509640 ~ 8511185 (-) True XLOC_005177
TCONS_00009991 mRNA downstream 69655 8484850 ~ 8504278 (-) True XLOC_005176
TCONS_00009990 mRNA downstream 87603 8483838 ~ 8486330 (-) False XLOC_005176
TCONS_00009988 mRNA downstream 502964 8064029 ~ 8070969 (-) True XLOC_005172
TCONS_00009983 mRNA downstream 719717 7757663 ~ 7854216 (-) False XLOC_005169
TCONS_00009993 mRNA upstream 6850 8581875 ~ 8817999 (-) False XLOC_005179
TCONS_00009994 mRNA upstream 7730 8582755 ~ 8817802 (-) False XLOC_005179
TCONS_00009997 mRNA upstream 379736 8954761 ~ 8958353 (-) False XLOC_005181
TCONS_00009998 mRNA upstream 381374 8956399 ~ 8958011 (-) True XLOC_005181
TCONS_00009999 mRNA upstream 393250 8968275 ~ 9084640 (-) False XLOC_005182
TCONS_00009989 other downstream 129912 8443904 ~ 8444021 (-) True XLOC_005174
TCONS_00009977 other downstream 1070835 7502962 ~ 7503098 (-) True XLOC_005164
TCONS_00009972 other downstream 1338830 7223789 ~ 7235103 (-) True XLOC_005159
TCONS_00009948 other downstream 3155593 5399680 ~ 5418340 (-) False XLOC_005137
TCONS_00009917 other downstream 4272557 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009996 other upstream 285168 8860193 ~ 8860307 (-) True XLOC_005180
TCONS_00010002 other upstream 474507 9049532 ~ 9051178 (-) False XLOC_005182
TCONS_00010005 other upstream 542027 9117052 ~ 9117178 (-) True XLOC_005184
TCONS_00010008 other upstream 770339 9345364 ~ 9345485 (-) True XLOC_005187
TCONS_00010009 other upstream 785291 9360316 ~ 9363873 (-) False XLOC_005188

Expression Profile

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