RNA id: XM_043235252.1


Basic Information

Item Value
RNA id XM_043235252.1
length 2331
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC122341701
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 26457623 ~ 26491717 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCACGCTCGCGTTCACGCGCTCATAAGTTTGAAGCGAAGCCTCTCTCGGCTGAACTCCGGCAGCCCGTTATTGAGCGAGACCGCGGTCGCTTTCGATCGGAAATCTATAACACGCTTCCGCGGACGGCCGTCTTGCTATGAGGACTTGAGGGAGGCGATAAGCGCGCTGTCCTGCCTGGCTTATTTGGGAGTTCTTCTCCCCCCCTCCCGTCCGAATAAACGACATCTGAGCGCGCGAGCTCGTCGCGAGAGGGGCAGAGGAATGTCGCGCGATCCGGACGAGGTGAACAAACTGACCGAGAGCACTTACAAGAATGTTATGGAACAGTTCAACCCCGGGTTGCGTAACCTCATAAACCTGGGAAAGAGCTACGAGAAAGCGGTTTCAGCCATGGTTCTGGCTGGGAAGCAGTACTTTGATGCCGTATCTAAGATCGGGGAGAACGCAGCCGTATCTCCAGTGTCCAGGGAACTGGGGGTCGTCCTGATGGAGATCTCAGACGTCCATCGGAAAGTCAACATGGAACTGGAGGAGaacTTCAGACGGTTTCATCGGGAGGTTATTGCGGAGTTGGAGAGGAAAACTGACATGGACGTGAAGTACATGACGGCCACGTTTAAGAGATATCAGACTGAACACAAGATGAAGCAGGACTCTCTGGAGAGATCGCAGTCAGACCTGAAGAAGCTCCGAAGGAAAAGTCAAGGAAAGAACGCTCCGAAGTATGAGAGTAAAGAGAACGAGTGTCTGGAGACTCTCACTCACCGTCAGATGGACATGCAGAAGTTCATCGCTGACGGCTGCCGGGAGGCTCTGCTGGAGGAGAAGAGGCGCTTCTGCTTCCTGGTGGACAAGCACTGCTCCTTCTCCTTCCAGATCTCTAATTTCCACGACAAGGCTCGAGAACTTCTGACGGAGAACCTGTCCACCTGGCAGGACAAATGCGGCGACGCTACCAATGTCCCCGATAGTGTGATGTCCATGATTGAAGGTCTGCGCACTCCGGTGTCCAACACTCCGCAGGCGTCTCCAGCCCTCCAGCGCCACAACAGAGCCAACTCGGACGCTATGATTCCAGCACCCCCAGCGCCGCCTCAGACGAGTCCCCTGGCCAACATGTTCAGTCAAGAGTCCTccaggagagaggagagagacacTGACTACAACAACGAGGACAACGGATTGTCCAGGTCTGTGTCGATGGCCACTGGCCTCAATCACATAGACAAAAGACCCAAAGTGCGTACCATTTTCCCCCACAAGTCTGGAAACAACAACACGCTGCTGAGTTTTGAAGAAGGAGACATTATCTCACTGCTGATTCCTGACGAGAGGGACGGCTGGCTTTACGGAGAgctgcagaaaaacaaacagcGGGGCTGGTTTCCATCATCTTACTGTCGCGCATACACAGAGCTAGCGGTAAATAACAGTATTGCTGGAAATCCTCCGATGCGCAGTAAGAGCGTGGCCAACCTCATGCAGAAGGACTCGGAGGACGACATGATGGTTCTGCCTCCCGCCGACTACAACGACTCACCCGTCAGGAGAAACTCCACCAAGAGCCTGATGCAGACGTACACCTCCACATACGATAACCCGGCGCTGCCTCAGTCAAACGGCCTGCCAAAGCATCCTATCCTGGGGGGAGGAAATCCATTCGCTACCGTCAAACTTCGGCCCACAGTCACCAATGACAGATCAGCACCCATCATCTGATCGACCCCGCGGAGACccgccgcacacacacacacacacacacacacacacacacacacacaccgttcaACCACTATTTATGTAAGTCCCCTttaaacctctctctctctctatgtatatatatatatatatatagagagagagagagagagagaaatcatcGTTTATGCATTTAGCTGTAATCAGATGCTTCACTTTTGAGTATCATTCTGTAAATACATGAGAGAAGACACACTAGATGGGAACCTGCTCAAGCAAGGAAAAGTCCTGATGATAGTGACGTGAACCCAAACACTGCTGACCCTCGAGCTGGTAACTAGTCAAGATGTTTACCAGAGTTAGCTGGCTAACTCGCTCAGCTGGCAACACCGTCATCTGCAGAAGCGCTTTTAGCTCCGTTTCCTTCTTTTAGATCAGCTTTGCTTTTATCAGCGTAGTCTTAACACTGAATGATACCGATCCGTCGTCGCTCAGTGGATGGGGATTTCTTTATCTTCCGCTGGGGGGAGACTATTCACTTGGCTCTGATTGTATCGATGCACTTTTCTGTTGATGTTGGACTGAGATCTTGTAGATCACTgctgtatgaaaataaaaatattttgtttcta

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007165 signal transduction biological_process
GO:0017124 SH3 domain binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG:

id description
K20127 BAIAP2L1, IRTKS; BAI1-associated protein 2-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35079 lncRNA upstream 21775 26428219 ~ 26435848 (+) True G23550
TU35028 lncRNA upstream 265781 26179232 ~ 26191842 (+) False G23508
TU35027 lncRNA upstream 267698 26179232 ~ 26189925 (+) True G23508
TU34527 lncRNA upstream 323793 26131602 ~ 26133830 (+) True G23189
TU34512 lncRNA upstream 384934 26059352 ~ 26072689 (+) True G23176
TU35088 lncRNA downstream 1229 26492946 ~ 26497967 (+) True G23552
TU35137 lncRNA downstream 153554 26645271 ~ 26646452 (+) True G23594
TU35237 lncRNA downstream 231095 26722812 ~ 26723027 (+) True G23659
TU35242 lncRNA downstream 237091 26728808 ~ 26729365 (+) True G23664
TU35302 lncRNA downstream 307094 26798811 ~ 26801395 (+) True srsf2b
XM_043228183.1 mRNA upstream 79212 26364279 ~ 26378411 (+) True nptx2a
XM_043228175.1 mRNA upstream 79212 26364283 ~ 26378411 (+) False nptx2a
XM_043234722.1 mRNA upstream 98810 26358256 ~ 26358813 (+) True LOC122341389
XM_043233804.1 mRNA upstream 399291 26041814 ~ 26058332 (+) True srebf1
XM_043233806.1 mRNA upstream 399291 26044229 ~ 26058332 (+) False srebf1
XM_043225963.1 mRNA downstream 8293 26500010 ~ 26515546 (+) True tecpr1b
XM_043225971.1 mRNA downstream 8293 26500010 ~ 26515546 (+) False tecpr1b
XM_043225981.1 mRNA downstream 8294 26500011 ~ 26515546 (+) False tecpr1b
XM_043225991.1 mRNA downstream 8294 26500011 ~ 26515546 (+) False tecpr1b
XM_043226000.1 mRNA downstream 8294 26500011 ~ 26515546 (+) False tecpr1b
TU34502 other upstream 548447 25907165 ~ 25909176 (+) False LOC122341383
TU34498 other upstream 551288 25894657 ~ 25906335 (+) False LOC122341383
TU34460 other upstream 607047 25839626 ~ 25850576 (+) False G23146
XR_006250491.1 other downstream 169523 26661240 ~ 26704452 (+) False pitpnc1a
TU35285 other downstream 267377 26759094 ~ 26772903 (+) False ubald2
TU35297 other downstream 307094 26798811 ~ 26801395 (+) False srsf2b
TU35298 other downstream 307094 26798811 ~ 26801395 (+) False srsf2b
TU35299 other downstream 307094 26798811 ~ 26801395 (+) False srsf2b

Expression Profile