RNA id: XM_043235273.1


Basic Information

Item Value
RNA id XM_043235273.1
length 6496
RNA type mRNA
GC content 0.51
exon number 15
gene id kansl1b
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21797020 ~ 21842872 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTAAATAAGTGCCACAGAAAGGTaattctgcttttaaacagtagATGGTGCTGTCCTTTTGTTTATGAGGACCTCTAGAAACAGGAAGCTTGTGCGGGTTTCATAATTTCTAACCTATTACGATAAAAGCTGCCTTTGCTGCAGTTTTAAGCTAGAAGTGTAGTCCGTTAACTTTTAATTTCACgttgaattatttactttttttgtcttccagCCCGATTATGACTACTATCAATGCAATTCTTGCGTTTTAGTGCAGTTCGTAGGCATGGGTCAGGAATAACACTTATTGAAATGCGTAGAATTCAGTGCAGCGCCGTTTGATGTCTTTTTGTACTTCAATGAGTATGTTTTTCTCGAGTACTTCCTGTCTCTTGGTCATTTTGGGACCCTTGAGTTCCCTCTACTGGCAAAACGTTTAATTTTAGAGCTTCTTTCTAGAAACATTCGACACTGGGCAGGGCTCTAGGTACTATTTATTGTCTTCATTTCGTCCACGTGCTATACTGTGCTATTGTGTTAAGACGTAAACGTTTTTAAACTACGCTCAAATGAACGTTTCGACAGTTTTCGACTAATTACGCGGCCTTTTCAACGTAAAATGTTGCCGCTGTCGTACGCTTTCGCCTCCGCGTGGCGCCCCCTGTCGTCCTGACGCATTATGACAGGAAGCCGAGCGCCTCTAGCGGCCGGTGGGGGCAGCGCGTCTCTCTCCCGCCACTGCGCCGCTCCGCTTCTTTCTGTTTGTCAGACTCGCGATCCGAGGGAGAGAAGCGAGCCGCCATTTTCCGAGCTCGTCGCTTCCCCCTCGAACGACAACAATAAAAAACGGACAAAAGCGGGGTTTTCTCAGCCGACGTCGACCACGAAGGGCTTCGGGAGAGCGACAGAAGGGACTGCGCTCAAAGAACGACCGGAAAAGGGATACGTTTCACTGCTTTTTCGCGGCTTTTGTCGGGGGCGATTGAAAAACAGCCGACTGGGCTCCTATAGCTCGACTGCCCCCGTTTCTTTCGCCCATTTCGTGATTCCTAAACGCAGCCCGGAGGAGTGGGAGGAGGAAAAGGAGGGGGGTTACCGAGCACCGGAGCGCGCGAGAGGCCCGGGATTTTTCCACCTGAACGTGCAACAGCGGAATCTGCATCTGGATAATTGCTTCTGCCTGTCAGTTATTACTGCTATATTTCTTAAGCGTGGGgatttattacatacatttcCCCCGGAATCGGCTCCTCATCACGTGGCTGCCCCCTGGCACAGTGGTAGGTGGGTGGTGTGGAGCTGGCCTCGGCACCGGGAGAGGCCCCCTCGCCCGCCCCCTCCCAGCGCTGCATGGCTGCAATGGCGCCCGCTCTGACCGACGCTCCGGCCGAAGCTCACCGCATACGCTTCAAACTGGCTCCGTCCTCCTCCACCCTGTCCCCGAGTGGCGTGGAGGGAAGCGGCACCGGCAACCACATCCTCGTGTCCAGTAACGGCACCGTCAAGCGCAAGGCCTCGGAGGAGCGCCCCTCTCGCGGGGCTGGCCCCTGCAAGCCCCTCGTTACCTCATATCACTGTTCAGATGTGTCCTCGGCAAAAGAGTCCCTGAAGCTGCAAGGTGTTCTTCTGCAGACGCACAGCATCCTGCCGAGCCTCATACCACGCCACCACCAGGCTTTAGAGCTCTGCGAGGAGCAGTCAAAGAGCGTCATGAGTGCCAGTGGAGGAGGTGGGCCGCCCACCGTCCAAGGCGCCACTGTCAACGGCATAGCAAAGAAAGTGACTAAACCGACTGGCAATGCGGTGACCTTAAATGGTGGCCAACACACTGTCGAGCCGGACTTGTCAAATCAGACTGAAGTTCTTAATTCCTCCAGAGCACTGACAAGCAACGGTCCTCTTCGAGAAGGTGTGGAGCAGCACCTGCCGCCGACAGTTGACTTCCAGAACTGTCCTAGCAATGGAGAACCTCCAGCAACATCTCCCGCCTCCATCGCAACTTTCACAGAAGACCAAACCTCGCCGCTAGGCAGTGAAGATGCACTGGCTGCCCACCAAGACCCTTTAGGGGGTCTCGGGGTGGAGGTGAGCGACCGTACTCAGCACAGCCAGAACAGACAAGGGGAGATCGAGGCACGGCTACGGCGATTACGCAAACGGCTGCAGGTGGTGCAGGCTAAGCAGGTGGAGCGGCACGTGCAACAACAGTTGGGCGGACTCCTCAAGAGCACACTGGGAGCTCTGGATGCCAGGCGGCCGAGGGGCCGTTACGGCGATGACTCGCTCACCCCTCAGGAGAGGGACGGACTAAGACGCTTCATGAAGAGTGGATCCATGCCGGCTGAGTTAGAGCGACTGTCCCTTAGCTGCACCACCAACCTGCAGTCCGCAGAATGTGCGTTCGATTCTGACGCCACGGAAAGCAGCTCAGGAGGAGAAACTGATGTGGAGGAGGATGAACTGGCTCGGGTCGACATCGAGCAACGTCACATTCCCCTATGTAGGAGAGCAGAAGGCCGCTATGCCGTTGACCGAGCTGCCATCATTAGTCACTGGAACTGGCTGCAGGCCCAAGTCTCAGATCTGGAGTACCGCATACGCCAACAGACCGACATTTACAGACAGATCCGCTCCAGCAAGGGCTCTGTTGTACTTGGGGGGAGCTCAGTGTGTGAGTCAGTATCAGAAGACAACAGTGACTCAAGGACAGAGACCATTACCTGCCCTGTCCCACGGgaGCATGATATTGTTGCAGTGGAATCGTCTGTATCACCCAATGGTATTGTCACAGAAACGGGCTTGAGGAAAAGCTGTGGACCTGTGAGACAGGTCAACGGCATTATCAGCAGCATACGGCCCAGTTCTCCTGTCAGCATGGACCCAGACGAGTCCCAGCCTAAACTGGAGATGGGCCCTCAGGCTTCCCCTGCACACGACAACACTTGTGTGGCGGCTCGCACGCGTCCTCTGCTTTTGTGCAGGAAACGCAGAGTCCTCCGGCCCGGCTCGCTCACCAGTCTCAATCGTAAGGCTCAGAGGTCAGTGGCTCCTCGCTGTGGCTGTGAGCTGAACGCTCAGTGTGTGATGTGCAGCGGACGTGCTCTCCCTCCTGCAGACACCCAGCACCAGCTCCCTCTACTGGACAGACTGGCACAGTTCGACCCCTGCGTTCACCCCATCCTCTCTTTTACAGACGATGTGATGATGAATCTCCATATGCAGCGTGTGCTGAAGGGACACTGGCAGAATCGTCCTCTGGAGAAGATCAAGCCCATCAAGAAGATCTCGCTCAAGCACAAGTTGTGTTTGGGTAGCCGCGTCCCAGACCCGTCATCCAAAGACAAACATAAGCTCGCCAACTCTCTCCTCTCCACAGTCCGTTTGTCGCATCCTAAGGTGCGCTCAGAGAAGGTTTTTCAGCAGCAGTTAGACATCCCAATCAGTGCCAGTAAACATGACTCTCGCCAGCCTTTCCGCCAGAGCAGTTCTTTTGACAGGACTCACGGCCGCAAGAGACCTCGTGAACCCTCGCTGGACCGCACAGAGAATGCTCCAAAGTTGAGTATGGACATGGGGAGTCCGTGCCCATCTCTGTCTTCTCTCAACACACCCACCCACAGTCCTCTGATGAGACAGCCGTCGATCTCCGAGACCTCCACGCCCCTCCAACTCAACAGCAGCGCCGCCACTATTCGCCGACGGAGAGGAGAGAGCCCCTTTGACATCAATAACATCGTCATCCCCATGTCTGTGGCTGCCACCACCCGAGTGGAGAAACTACAATACAAAGAGATACTTACCCCCAGTTGGCGAGAAGTGGACATTTTTGCAAAACCAATATCTGAAGAGGATGACACAGTGGAGATCGAGGATCTCTCAGACGTCACGTTCTCTCAGCTTCACCTTCCGTGTGAGGAGCAGGAGCGCTCTCGCTGGAGTTGGACTGCCAGCAACATCGCGAAGAGAAGGGGCAGCAGGTCATACAAGTCTGTGGACGGTCGGACAACCCCCTTGCTGTGCGGCACAAACCCCTCCACACCCCAGCCCTCGTCTCCAGACACGGCACATTTCCACATGCTCCATGACTACAATTCGGTGGCATCTCCATCCAGCCCTGTCAGTCCAGAGATGCTGATGCTGTCCGGCCTCCACACGCCCGGCTCCAGAGACTCCCAGCGGCTGCTGTCCAACGAGGACACGCGCTGCTCCACCCCAGACACCTACGAGGAAATGCCAGTACAGCCATGGGAATGCCGGACCTTTCCCCTGGATGTGGATCCACAGCAGGAGAGCGAAATCCTACACAGTCCAGGCGGAGAGAGGCCCTGTAGGACCATTCGACGGGTGTCCGGGTGCAGGTCGTCCAAGTCGGAGTCTGACGCTGGGCCTTCGTCACCTCTCGGCGATGACGGCACcaagcaaaaacaaaccaacCCACCCAAACCTACTCACCGATGAAGCCTAGACTCTGCCCGCCCAACGAAACCCCACCCCCCGCCGCCCACCAGCTTTCACAAACTCCTGAAACAGCAGCGTCGTAGAAGAAAAATAACACCACCAACGAAACGAATGAAAGTCCCTGTTGTTTGATATTCAAACATCAGTAAATTCTTTCACAGTTTTTAGTGAATCGtaaggagatatatatatatgaagaccTGTTTTAATTTAGTCTCGCTTTTGGGTCACTggacaaaaaaatgtgtaaaaaaaaaaaaaaaaaaaaaaggaagaatgaaattAGCTTGAGGGCTAAATCAAAATAAGAAGCTCCGAAACGTATCGTATATTGCAGAAGAGCACTTCCCCCTTGGCATGCTGTCGCACTGAGGGGCTCAGCTTGCATTGTGTGTGCTACCCTTCCAGAGTTTTCCGAAATCCCACCTAAAATTACTCTTTCAGCCTTGCAGTTTATACTGGAgtgataaaatgctaaaataaagcCAACGATAACAAGAGACTTGCACAAAGGCGCAGAAGCCTGTCTTTGTTCTCTACGAGAAAGCACTTCAAATTATTCTTCTCTACACATTCCCTgcctattattttaaacagacaaaCTTGCTCGAGAATGCCATTAATTCCAGTTTCTGGTTTCATTTCGGTCCCATGTTCTCGTGAGTGCTGTGGTTTGTCTGTGCCCCACTTCTGTCAAAGTGACGGAGAGAGCAGGTGCCGGGAAAACGAGACTGCCGCATTGCTCTCGCGGTCCTTTAAACACCGCCGGGTTGATTAGAGCACTTAATCGGTCTCTTGCACGACACGATTGCCAGCACACTTAAAATCAGCACCTGGGAAAAACATGCGCAGGACGCCAACATTCAAAACAAGGTTGCACTCGGCGCAACTCTGCAGCTTAGACGAGGCGGCTCTTGCTCATGTGGGCTTGCGTTAGTGCGAACTTTGAAGCACTTGTCGTTGCGGTGCATGATTGGGTCTGGAGAACGTGCGCTCACTCCAATATAAACTGAAATCCGCTGCCACTCTGCTTTTCTATCAATTTCGTTCTTACCCTAATTATAAGAGCTCTTCCGTTGATTGGTCAGGTCTAAACTCCGTTTGATAAAACAGTCTGCAATACCTACAGCCATCGTCGAATCCCGTAACTTGATGTTCGAGTAATAATGTTTGCTGGAGTGCGCGATAGGAAAGGACTTGGCAAATTTTCATTCGTCGGCTCCTCAGTTGCTGTCGGTCACAGCCCCGTTTTTTCCATTGTGTAACGATGAGGAACGATTTCTGTAAGTTCCTCAGTCGGTGAGTCACTGCTTGCAACTCCTTCCTGTTATTTTAACTAATACGAATGTACAAGTCTAATAGCGGACACCAGTTACTTAAGATTTTTATAAGTAGCTTCTCTGTATCTGTCGTCACACGATTCTAGCTATTGTAGCCATTTGTTCTTGTTTAAGGGATGTCACGTAAACCAGAAATCCTTAATATATTCCTTTTTATCTCACTGGAGCGTAACAGCATTCATAGCGTCAGAGAAGTCTCATCTGTTGAGGTTGTGTGGCAAATCGCAAGGGGACCATCCACGACTGTCCCATTTCCTGCTGAGAAAACCCGCCGcccctttcatttttaatatcattaattaTGGTTTTATGTCTCTCTGTGGGGGTCTGTGTACTTATCAGGCAAATGTACCATAAGGTTTGACTAGCTTTCAAAAGCCAATATTGTATCGTGTGAGTTATTTTCATACTTTGAATTTCCAATGTGGTGAATGAGGGTTGGGTGAGTCTGGTATATCCTTTAGCATGTAATAGTTTGTACAAAACgacaacgacaaaaaaaaaaaaagtttattttgtacATACCTTGTTTGATTCTTTACTGTGTTTGATGTTCAGGCTGTAGCTGTCCTGATTGTCTAGGGAGAAGACACACGAGAATATTTAACACTTTCTTTATggagaggcaaaaaaaaaaaatgtttatggaTAATTGGCCGATCTGACAGACAGGCAACGTTTGTGCTTCTCAAATTAAAAGTGAATTATATTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32959 lncRNA upstream 62818 21734138 ~ 21734422 (+) True G22201
TU32956 lncRNA upstream 160670 21636123 ~ 21636570 (+) True G22198
TU32955 lncRNA upstream 161161 21635744 ~ 21636079 (+) True G22197
TU32816 lncRNA upstream 303742 21345129 ~ 21493498 (+) True G22094
TU33101 lncRNA downstream 134746 21977618 ~ 21979015 (+) False wnk4b
XR_006250495.1 lncRNA downstream 193010 22035882 ~ 22089931 (+) True LOC122341843
TU33104 lncRNA downstream 193045 22035917 ~ 22089931 (+) False LOC122341843
TU33106 lncRNA downstream 193045 22035917 ~ 22064100 (+) False LOC122341843
TU33114 lncRNA downstream 426305 22269177 ~ 22287045 (+) False hdac5
XM_043235446.1 mRNA upstream 1837 21783456 ~ 21795403 (+) True cdc27
XM_043235447.1 mRNA upstream 1837 21783456 ~ 21795403 (+) False cdc27
XM_043232034.1 mRNA upstream 63113 21637743 ~ 21734127 (+) True crhr1
XM_043234630.1 mRNA downstream 56434 21899306 ~ 21918705 (+) True scn4ab
XM_043234631.1 mRNA downstream 56434 21899306 ~ 21918705 (+) False scn4ab
XM_043234701.1 mRNA downstream 81617 21924489 ~ 21926112 (+) True gh1
XM_043230602.1 mRNA downstream 83994 21926866 ~ 21929640 (+) True rdm1
XM_043234702.1 mRNA downstream 90372 21933244 ~ 21934233 (+) True ifnphi3
XR_006248723.1 other upstream 63113 21637743 ~ 21734127 (+) False crhr1
TU32806 other upstream 382954 21295702 ~ 21414286 (+) True G22087
unassigned_transcript_291 other upstream 1482909 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 1609157 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 1610042 20185567 ~ 20187198 (+) False eftud2
TU33098 other downstream 132380 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 133637 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 686117 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 703286 22546158 ~ 22547208 (+) True G22329
TU33451 other downstream 1062505 22905377 ~ 22906695 (+) False LOC122341356

Expression Profile