RNA id: XM_043235295.1


Basic Information

Item Value
RNA id XM_043235295.1
length 4681
RNA type mRNA
GC content 0.52
exon number 20
gene id cramp1
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20367445 ~ 20382139 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAAAGATTTGCCTTGTCGTCTGTCGTTTCTGCAGGGCGCTAAAGTGAAGGCGCTCGCGCTTGAATTTCAAGGTAAATAAAGGGCTCGCGAGCGAGCAGAGCCACGCGAAACTACACAAAAAAGGAGGCTGGGGTGAAAGCGCGATGTGTGTTTTCGGTCACGTTCGTTGAATAGTCGAAGGGCTGTGTTTCGACGCGTTTTGTCGGGACGGTGAGAGGGGATTTGAAACAAACAGCGGCGGCCATGTTGAGATGACAGTGGGCCAAGGGGGCGGTTCGGGAGTCGAGGGGCCGAGCAAACCGGACCGAAAGCCCGACGGAGGCGAGGATGGAGAGAGCGCAGATCAGGCGAGCGAGGAGACGAGTACAAAGAGAGTCGGAGAGGAAACACTTAATCCATCAAGCGCGGCCAGCCCCGGTTCGGCTCCGACTCTTTCCAGCCCGACACCGAGCCCAGCCGGAGCCCAGGTGAACCCGACAGCGCTTTCCCCGGTCCTGGCCGCCCCGAACAACCAGGACCAGCATCATTTTCTCCGCTCCAGCGTGCGACCTCCGAGCAAGCGGATACGGAAAGATGCCTCGTCCGCGGCGCTGAACGGTCACGGCGGTGCGAAAGCGAAAGGTGCAGAAGCAggtccctctgtgtgtgtgacagccGCTGCAGGTTCAGCTGGAAGTTCTGGGGCAGGTGGGGCATCTAGATCGGCCCCGAAGGGCCAGGGTCCTGCAGAGAAGGAGGAAGGGGGGAGTCAAAAGCGAGTGCGCAGACAGTGGGAGTCTTGGAGCACTGAGGACAAAAACAGTTTCTTTGAAGGACTTTATGAGCATGGGAAGGATTTTGAAGCTATTCAGAACAATATTGCTCTTAAATATAAGAAGAAGGGTAAACCAGCAAGTATGGTGAAGAACAAGGAGCAAGTGCGGCATTTCTACTACAGGACCTGGCACAAAATCTCTAAACACATTGATTTCAACAACGTGTATTCACGTGTGCTGAAAAAGTCCTCTCAGGAGCTCTATGGCCTCATCTGTTATGCTGAACTCAGGAAGAAGGTTGGAGGCTTGATGGATGACAAAAATGTGGCCAAACTAAATGAGCTTATCCAACAGGgGGCCACAACAGTGCGTTCCAAAGGCAGAAATCTGAGGATCAAAGCTCCCATGTGCCGCGCACTGAAGAAACTCTGCGACCCAGATGGGGTGAGTGACGAGGAGGATCAGAAGCCTGTGCGTTTACCCTTGAAGGTGGCTGTCGAACTTCAACCACGGAGCAACCACTCCTGGGCTCGGGTTCAGAGTCTAGCCCATAATCCTCGGCTCAGGATGGTTGTTGAGTTGCACCGGAAGGTCTCCACTCTCATTGAATTTCTGAAGCAAAAGTGGGCTGTCCAGGATCAACGAATCCGTAAGAGCCTCGCAGAGCGAGAAGCTCTAGACGGCCTGGCCCAGTCCAGCGAGTCGGAGGACCTGTTCTTGTTTCCGGCAGAGAACAGCACAGTTACTACTTTGCCAGGTGTGGCTCGTGTCGTGCACTCAAAAGCTTCCTGCACTGTACACTGGCAAGAGAGTGGGCGTGGCCGCACAGGTATAAGGGACCTGCCTGCAGCTCACATTTTGGGAATTCAACCTGCAAGAGGAAAATCTGGCAAGTCTGGTCCGGTGGGAGGAGACCCGAAAAAAAGCGACGGACACCCTGTTGACGGTCATGATAGCAGCACTTCAGCTCCAGGGTTGGAGACCAGTGTAAACCCAAACCTGAGCACTACCTCTCCGGTCAGTCCAACCCTCACTCCGTCACTCCCCAATGGGCCGGAGGGAAACGCGGTGGGGACTCTTGAGCAAGAAGCAGCAAGTCAGACCGATGCTAGTGGGCGGGACAAAGAGACTGTGACTCAGGGAGACCCCGCCCCAGTCGAGGGCCGGACTGAGGAGCCTGGAACGGCAGGAGGGGTCGCTTCAGAAAAAGCACCGCCACAATCAGAACCGCATGGGCGTGTCGAGGAAGTGAGCGGGTCTGGGCGATCTCCTCAACAAATCCAAAATGAAGGTTGGTGCTCACAGGGCTCTGAGAATGTGACACTGGCAGAAGTCTACCTCATGCTGGGCAAGCCTGGGAAACTACAGCTGGAGTATGAATGGCAGACTAAACCCCAACCCTCAGCCCTGCTCACCACTCAAAGTGTGCTTCGGTGTCTCCTGAGACTTGTGTCATCAGAGGTCAACCCCAAACCAACCCCGGAGGTGTGTTCAGTGGGCACTTCACCTCTCAAATCAGGTCAAGAGGAATCGTCTGTGACTCCTCCAGGCAGAGCTCCAGCCGGGGCGGCCCGCAGTCCTAGCTGGAGTCGTCAGCAACATGCCGCACGCTCAAAAATACTTCTGAACAATGCGGTCATCACAGGTGGGAGAAACCTGCCACGGTCTCTGCTGGCCTCTGGAGGTGACAGCGAAGGATTTGCTGTCCCGACGACCCTGCCTCCTAACAGCTCCCGCCAACTAAGGATGTTCTCTCCTAATAAAGAGGCGGAGCTAGCCTTTCGCCAGCAGCTGGACTCCATCAGTtcAGATATATTTTCAAAGCAGCGGAAAATAGGCAGGGGGCGTCCTCTAAGGAAGCCTCTTGTGGTTCAGAGAACTCTTCTGCCACGAACAACTGGAGACACTTCGCCTCATGTTTGCTCCTTCTCCATTCTCTCCAATTCTTCTGCTACAGGAACTGGCTCGTTTCGTCCAATACAAGCTCGCCTTGCCCCGTCCAATCGCCAACTTTCCTCAAAAGCCTTGTCCGCCACAGCCAGTTCTGCTCCCGCTACCCAGCTGTCCAGTGCAATTGACCTGGCTGCAAAATCTGCAGGTATTATTCCTGGCAGCCCCTGTCGGGAAGCGGAGGCCTCTAATATAGATAAGGCCATAGTGGAGTCTGAGGAGGCCATGGACTCGGCACCTGCTGCATCTGAGCTAGAGCCAGATCTACTTGATCAGGAGCCTTCTGAGGAATCATTGCAGAATGGTGTGTCTCCACCATCTCCAGGGGGTGGGGACTCCCTCTTGGCTCCTCCAAGTGTTGCCTCCTTATTGGATATCTCTCTACCTGGCCCCCCAGAGGAGTCTCTTCCTTCTGGAGAGCCACAAACTCAAATCAGCGACTCTATTATTGAGCTCGCCATCAACTCGCACTATGGTGATGGATCATTGCTCTCACCTCCTAAACTCAATGGGAGTGATAGATCCAAGCTCCTTCCCTCTTCATGTGACAGCTGGATGCCGTCCCCCACACATGACCCTCAGTGGTACCCCAGTGACTCTACTGATTCAAGTCTTGGCTGCCTGCTCTCGAGTCTGGCATCTCCTGATAAGACAAGAAGGACAGCCCTGCCTCCTTCGAGTAACACAGCCTTACTTGGACCCAGTTTACTGGACAGCAACTCCCACGATTGTTTTCAGTCCCGCGGCCTGCCGGATGTAGCCGAGGTGGACACCCAGCTGGCCTGTATGATGAGCGAGAGCAGTGTCGACTACATCGCCCGCTTCAATGACCTCGCACAGGAGCTCTCTGTCACTGAACCGACCCTGCCACCTCCTCCTGAGGACTGACGCAGGGGGCGGAGACTGTCATTGTTCACGTTGGACAGAAGAATGTTAACCGGAGTGCAGTGCAGCTGTAGGAAGTGCAATAGACTGGCAGGGTCCACAACAGCCTTtaggcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagcgTTCGTGGGAGCGTTCGTGTATGCGTGTGTTGATCATTCTGTGGCTGATGTCTTATGAGCTACACCCAGGAcacttaaacaacaaaaaaaaataattccagTTTACAGCACAACCTCATGTACAGAGAAAACAAGACCTGCCATATCTGAACAAATACCGTCTTCTCATCTGTGTATCCGTCTCTGTTGTCTTTGTCTCACTtttgtgtgcgtgcatgtgcaTGCATCTGTAAGTGGAGCTTGTCTTCGTCATGTACACAACACGTTTATGCGAAACCCTCTAAAGCCATAGGAGTGCGTCTGTGGACGCGCTTCGTTTACGAGACCTCAGAATCTGATTGGTTTTCTTTTCATCAGAATGTTGCAAGTTTGTGAAAGCCACACTACTGAAAGGGACAAGGGCTTCTTTTTGTGAGATTATTACGAGGACTGAATAACACACACTAAACGAAATGACTGATAACATAAATGCAGTGTAGTTGCATCAAAAGTGAGATTGAACATAttacgctgtttttttttcttcttcctcatAACACTAGGACTTTTGTTTCCTGCCGAATGAATATGAAGCCAATAATTTGTAGATTCTAAAACTGAGTTTTCTTATGTgagactgtgtgtttgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatttatgtGAGTGTTTGCACAGATGTAAATAGACAATAACAGACCCCAGTATTTACTGCTTTTGTAACATATTGTAAATTATTGtcatttggatttatttattgataactCACTGagacagtgttttttgtttaacatgTCAGATGCAGGCATTTAGGAGCTCCTCTCCGCTGTTTTAAAGAgttctgtgttgttaaaagggGTTTTTTAATCCCGATGTGTATAAATAGAGCTACAACAAACA

Function

GO:

id name namespace
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32192 lncRNA upstream 23919 20339891 ~ 20345356 (+) True G21660
TU32193 lncRNA upstream 26979 20341072 ~ 20342296 (+) True G21661
TU32185 lncRNA upstream 55131 20230015 ~ 20314144 (+) False G21655
TU32184 lncRNA upstream 55131 20313295 ~ 20314144 (+) True G21655
XR_006250526.1 lncRNA upstream 183749 20173694 ~ 20185526 (+) True LOC122342124
TU32202 lncRNA downstream 11422 20393561 ~ 20393901 (+) True G21669
TU32204 lncRNA downstream 25653 20407792 ~ 20408327 (+) True G21671
TU32232 lncRNA downstream 98192 20480331 ~ 20518038 (+) True G21687
XR_006249635.1 lncRNA downstream 338434 20720573 ~ 20726559 (+) True LOC122337901
TU32293 lncRNA downstream 341319 20723458 ~ 20724700 (+) True G21732
XM_043229013.1 mRNA upstream 35225 20331334 ~ 20334050 (+) False nme3
XM_043229006.1 mRNA upstream 35225 20331943 ~ 20334050 (+) True nme3
XM_043225682.1 mRNA upstream 38045 20328156 ~ 20331230 (+) True mrps34
XM_043235622.1 mRNA upstream 41723 20321945 ~ 20327552 (+) True spsb3a
XM_043235443.1 mRNA upstream 48985 20316318 ~ 20320290 (+) True atp6v0ca
XM_043235297.1 mRNA downstream 133 20382272 ~ 20386834 (+) True dhrs7b
XM_043235236.1 mRNA downstream 48230 20430369 ~ 20443456 (+) True LOC122341693
XM_043235237.1 mRNA downstream 48230 20430369 ~ 20443456 (+) False LOC122341693
XM_043235996.1 mRNA downstream 62769 20444908 ~ 20451990 (+) True LOC122342178
XM_043235995.1 mRNA downstream 62769 20444908 ~ 20451990 (+) False LOC122342178
unassigned_transcript_291 other upstream 54944 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 181192 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 182077 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 261439 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 301274 20066130 ~ 20068001 (+) False LOC122341338
TU32806 other downstream 913563 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 1255604 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1593113 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1594370 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 2146850 22528989 ~ 22530060 (+) True G22344

Expression Profile