RNA id: XM_043235298.1


Basic Information

Item Value
RNA id XM_043235298.1
length 1847
RNA type mRNA
GC content 0.46
exon number 7
gene id bckdhbl
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20248076 ~ 20251489 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGCTAGCTACGCAGTCCTAGGTCAATCACGTCTCATTTTCTTCTGAGGTTCTAGACTGAGGTATTAGGTTTAAAAGTGTTCGTTTCCGGTCACCAGACTGTGTGCACGCCAAGTTTATGTTGCTGCGTAATTTTGCGCATAATTATTTTTGGAAAGGTTTCCTCATCACCCTTACGATTTGTCGAGGTATGCGTGATGACACAGGACATGATCTCACAAGCCTGGTTATTGAGGAACTGGTTTCTAAAACGTTTTCTTTACAAGAAGTGGCCTATTCAACACATTTAATTCTAGCGTTGGGTGCATCGAAGGGATCGGGATCAGCACAAAAATGATGAAATGGAGATCGCTGTCTGCTTTGCTGTGTGTTCCGCTCTTGACTGGGTTATGTAATGGATGCCTAGCACCAGGGGGAGATTATAAATTCAGATTGCGACTGACGGAAACGCTTGTCAGCGTCAAGAGAGGACAAGCCCGGATCCCCTGCGCGTTCACTGCTCCCATGAGGGCGCTCTCCGGCCGCCAGGTCTGGTTCAGAGGCAGTCCCGAGTTCCCCCTCAGCCCCGCCGAGGCGCACAAGATGAGCGGACTCATGGGACCCAGGATCTCCACCGAGTCCGAGTGCAGCGTGGTTCTGTGGGACGCCCGGGAGACGCCCGAGGAGTACGGCTTTATGCTGGAATGGGGAGCGAACGAAAGACACGTTTTCCCCGATAGGGTTAAAGTGGTCTCGTGCGTCGCGAAAGTGGAGTTGACTCCAAGCACTTACGCCAAGGACCTTTTGGCTGGAGAAGAGACTGTTTTCAAATGTAGCCTTTCAAATCACTGCCCTGGCATTGATCCAAAAATAACCTGGAAAGGGCTCAGCTCAACACAAGTAATACAACAatctaaaaaagaaatgcttgaAAATTCGGGATACTCTGAACAGCTCCTGTATGTCCCCTTGCCCGAGGATCACCAAGCAGAGATCACGTGTGAAGCTACGTTTGGGAAAAATCTAAGTGCAAGTGCTAAAACAATGTTGACGGTCCACTCTCATCCTCAGATACTGAACAGCTCTGCATGCTCCCTGCAGCAGGATCAGCTCACTTGTGTGTGCGTCAGTCAGGGAGTGCCCTTGCCCGATATTCACTGGCCTCTGCTTCCAAGCAAACACTATTTCACTAAAGCCAGAGCATCGCACATCACTGTAAGAAGCACCTTCACAATGACCGTTGTGAAGTTCACAAGTAACAGCACCGTCACGTGTGTCAGCAGAAACTACCTTGGTCAGACAAACATGACTCTTCCAGTCAACATCACTGAAGGTCTTAGAAACGCATATAGGTGGACAATCAAAGGGCTGGCGATTGCATTATTCATTACACTGACATTCTGTGCAATTTGTTTTTGGATAAAAGCAAAATCCAAGAAACTACAAGAGGCACACTACAGCACACTGGAAGAGGGAGcagaaaatgacatgaaaaCACAAGATTGGACTGGTTTCACGGAGTAGCATTTATACTAATAACTTTCAGAGATCTGTTCAACTCAGATGAACATGGCACTGAAATTCCTGAATTAGCTTAGTtccataaatatttacaatggTCATGAACTCCTGGTATTTTCAGtctacctttttttaaatgactaacGCCATTCTGTGGATGGGgagacatgtaaaaaaaaaaaaaaaaaagtcagaggCAGTAGTGCTGTATAAAATTTGCTGTAACAATTCTAATGCTAAAATTGTGTTCCTTTCAGAGTGTTGCGAGACTAATTTCTAAAGCTTCGTATCTTGTGTTGACCCCTCTGTATGCATATAAATCCATAAACACTCTGGAGGCCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250526.1 lncRNA upstream 62550 20173694 ~ 20185526 (+) True LOC122342124
TU32179 lncRNA upstream 75074 20168636 ~ 20173002 (+) True G21652
XR_006250469.1 lncRNA upstream 86865 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA upstream 86871 20160436 ~ 20161205 (+) False LOC122341550
TU32079 lncRNA upstream 182200 20064960 ~ 20065876 (+) False LOC122341338
TU32184 lncRNA downstream 61806 20313295 ~ 20314144 (+) True G21655
TU32192 lncRNA downstream 88402 20339891 ~ 20345356 (+) True G21660
TU32193 lncRNA downstream 89583 20341072 ~ 20342296 (+) True G21661
TU32202 lncRNA downstream 142072 20393561 ~ 20393901 (+) True G21669
TU32204 lncRNA downstream 156303 20407792 ~ 20408327 (+) True G21671
XM_043225769.1 mRNA upstream 18406 20201276 ~ 20229670 (+) False gjc1
XM_043225734.1 mRNA upstream 18406 20202133 ~ 20229670 (+) True gjc1
XM_043225743.1 mRNA upstream 18406 20202133 ~ 20229670 (+) False gjc1
XM_043225728.1 mRNA upstream 18406 20202133 ~ 20229670 (+) False gjc1
XM_043225719.1 mRNA upstream 18406 20202133 ~ 20229670 (+) False gjc1
XM_043235196.1 mRNA downstream 3335 20254824 ~ 20284900 (+) True cacnb1
XM_043235202.1 mRNA downstream 3335 20254824 ~ 20282420 (+) False cacnb1
XM_043235203.1 mRNA downstream 3335 20254824 ~ 20281602 (+) False cacnb1
XM_043235198.1 mRNA downstream 3336 20254825 ~ 20284900 (+) False cacnb1
XM_043235199.1 mRNA downstream 3336 20254825 ~ 20284900 (+) False cacnb1
TU32181 other upstream 59993 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 60878 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 140240 20106846 ~ 20107836 (+) False LOC122341546
TU32077 other upstream 180075 20064490 ~ 20068001 (+) False LOC122341338
unassigned_transcript_291 other downstream 62771 20314260 ~ 20314331 (+) True trnac-gca_3
TU32806 other downstream 1044213 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 1386254 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1723763 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1725020 21976509 ~ 22025911 (+) False wnk4b

Expression Profile