RNA id: XM_043235302.1


Basic Information

Item Value
RNA id XM_043235302.1
length 1697
RNA type mRNA
GC content 0.45
exon number 13
gene id alg1
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10390510 ~ 10394344 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACAATGGCGGATGCCAATGCGGCAGTGGCTGTAGTGACAGTTTCATTGGTTCTTTTGGGACTTTTATCGGGGTTAAGCTTGTCGTGGGCTCTTCTTCCAGTCGCTGTAGTGGTGCTTATTTTTGTACTAGCCAGCGGATTAAAGGGGCGAGATGAACTTGCACATCTGAACGTTTGCGTGTTGGTGCTGGGAGATATAGGGCGCAGTCCTCGCATGCAGTATCATGCGCTCTCTCTCAGCAGACATGGATACAATGTCACCTTAATTGGCTTCCTtgGTACTAAACCTCATCAAGACATACTTGAGGATGACAGGATAGACATACTTCCCATTTCAGAACTAAAGGGGCTTACAGTTGGCCCCAGAATTGTCAGGTATGCTTCAAAGGTGATATTTCAGACTTTCCAGCTGTTCTATGTTTTGATGAAGATTGAGGACCAGGGCTATATCCTTATGCAGAATCCTCCTGGACTGCCAGCTATAGCTATAGCATGGCTGGCAAGTCGTTTCAGGGGAAACCAGTTCATCATAGACTGGCACAACTATGGATACACCATAATGGCTCTTACTCATGGGCAGAATCATTTCATAGTTAAGCTGGCAAAATGGTACGAGAAACTCTTTGGATGTTTCTCAGATCACAACTTATGTGTCACTAACGCGATGAGAAATGATCTTCGGAAAAACTGGAATATTGAGGCAACAACGCTGTATGACAAGCCACCCCCGATATTTAGAGAAACGCCTCCGAAACTTCAGCATGAGCTCTTTGTCAGACTGGGCAGTGCTTATTTACCATTTAGGCCTAGTCCGGATGCCACTAAGGAGTACATGGAACTGACAGCCTTCACAGAGCGCAATACTCAGACAGGTGCTGTGATGCGCTCCACTGGACGACCCGCTCTGCTTATCAGCAGCACCAGCTGGACTGaggaTGAAGACTTCTCAATTCTTTTACAAGCCCTTGAAGAGTATGAGAAGTTTGTTGAGGCAGGCCACAAACTTCCATCATTGGTCTGTGTAATTACAGGTAAAGGTCCTCAGAAAGAGTATTACAAGAAGCTGATCGACTCTAAAGAATTACAACATATCAAGATTTGCACTCCATGGCTGGAAGCAGAGGACTATCCAGTTTTACTTGGTTCTGCTGATCTTGGAGTCTGCTTGCACAGATCCTCCAGTGGTCTTGACCTTCCAATGAAAGTGGTTGACATGTTTGGATGTTGTCTACCAGTCTGTGCCATACACTTTCAGTGCTTGCACGAACTGGTGAAAGATGAGGAAAATGGACTCATTTTCAAAGACTCCAAGGAGCTGTCTGAACAAATAAAGCTTCTGTTTTCAGACTTCCCTAGTGATCAGGGGAAACTGGGCATCTTCAGGAAGAATCTAAGGGAAAGCGGGCAGCAGCGCTGGGATGAGAACTGGGACCAAAATGTCCTGCCGCTTATTAAAGAGCACTGCGACTGACTGTCTGGGCGAATGGTTTGCGCAACGTTCTCTCAAATCCTTTGACTCCCATTCACTGGAAAGTTACTGTCAGGTATATGCACAGGGTACATATTTTTAAGCTAACCGTCCCCGCAACGGGACAATCAGCATTCCAGCAATGCAATCGGGAAAGACTTGAATATGAGAATAAAAAGCACACTACCtttgtaaatattatgtaaataaatactttattacaaaga

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03842 ALG1; beta-1,4-mannosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27867 lncRNA upstream 88460 10273974 ~ 10302050 (+) True G18671
TU27728 lncRNA upstream 287049 10034141 ~ 10103461 (+) False G18574
TU27641 lncRNA upstream 447357 9865786 ~ 9943153 (+) True G18517
TU27691 lncRNA upstream 478898 9910957 ~ 9911612 (+) True G18549
TU27627 lncRNA upstream 531337 9854603 ~ 9859173 (+) True G18507
TU27964 lncRNA downstream 177475 10571819 ~ 10579144 (+) True G18744
TU27967 lncRNA downstream 195178 10589522 ~ 10589819 (+) True G18747
TU27977 lncRNA downstream 244745 10639089 ~ 10639293 (+) True G18757
TU27983 lncRNA downstream 268902 10663246 ~ 10664532 (+) True G18763
TU28016 lncRNA downstream 297546 10691890 ~ 10693750 (+) False LOC122333995
XM_043235937.1 mRNA upstream 4867 10374102 ~ 10385643 (+) True flr
XM_043235938.1 mRNA upstream 4869 10374102 ~ 10385641 (+) False flr
XM_043233707.1 mRNA upstream 94109 10242510 ~ 10296401 (+) True sept12
XM_043235304.1 mRNA downstream 3499 10397843 ~ 10401045 (+) True LOC122341728
XM_043235654.1 mRNA downstream 28402 10422746 ~ 10571227 (+) True cacna1ia
XM_043234873.1 mRNA downstream 201300 10595644 ~ 10607509 (+) True grap2a
XM_043234869.1 mRNA downstream 213292 10607636 ~ 10617581 (+) True fam83fa
XM_043235677.1 mRNA downstream 231818 10626162 ~ 10638596 (+) True rac2
TU27725 other upstream 356043 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 590755 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 640630 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 693951 9694632 ~ 9696559 (+) False aanat2
TU27325 other upstream 1204929 9184528 ~ 9185581 (+) False LOC122341719
TU28036 other downstream 358415 10752759 ~ 10781853 (+) False kcna7
TU28033 other downstream 384462 10778806 ~ 10781853 (+) False kcna7
XR_006250543.1 other downstream 768010 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 939415 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 974549 11368893 ~ 11369752 (+) True G18949

Expression Profile