RNA id: XM_043235305.1


Basic Information

Item Value
RNA id XM_043235305.1
length 2924
RNA type mRNA
GC content 0.43
exon number 13
gene id snx8a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16359912 ~ 16369501 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCACTGTCACACTGTACCATGTATTTCCACATCACTACAACTTTAAGGAGAGGGACATTCCTGCTCTTTTCTGCAGGAAATCACATGGAAGTGCCATCGCGCTCACATGACATATAAACTATGGCAGCGGACATCAATGAAGGATCTGTCCCTTCATACTATCGTGAAGTACATCAAGCCATCTGCTCCAGAGCTGATGAACGAGTCCCTGTCGGTGTATTCCAGAGAGTTCTCAGCAGAACATCTCTCTCCATCACCCTTCAAAACCAGATAGCAGAACATGTAAACGGTGGAGATGGGTTCTTAAGTAAAGTCTCGCTGTATAAAGGCTTGGCTCTCATTGCGCTTGCTCAACAAGGAAAACCACCAAGTCCTAAACTGCTGGAGAATTTCATACAAGAGTTCCCGAAGCCTCAGCTGGGAGAGCCGAAGGAGCTTCAGAGTCTGAAGATGCAGACGGTTCAGGAGAGTCCTTTGAACTTGACTTTGACTCTGGAAGAGCTGTTAAAGAAGAACACCATCAAAGTCGAGCTCATTCCTGAGAAGAAGGGGCTGTTTCTTAAACACGTGGAGTATCAGGTCACCAGTGAGCGCTTTACAGTATCAGTCTATCGGCGATACAGTGATTTTGATGTGTTCCATGAGCTCCTGCTTCAGAGATATGCTTATAGAGTCGTGCCAGCACTTCCTCCCAAAAGGGCACTGAAAGGAGTCTTGACCTCCACGTCAGAGCGAGAGTTCATTGAAGGGCGGAGACGAGCTCTGGGCAGGTTTCTGAATCTTGTGGCACGACATCCTGTCTTCTCCGAGGATGAGCTTATGAAAACATTCCTCACCTTCAGTGGCTCGGATGTCCAAACTAAACTTAGAGATGCTTGCAAAAAATTGGGTGATGAGTTCATGACATGCAAATATGCAACACTGGCCAAGGATTACCTTCCAGTGGATATTCAAACTCAGTTTTCAGCCAGCAGAGAGCTCATCAAAAATATCCATAACAGTTTTCAGAAGTTACGGGACAGGGCAGAGAGGATGGCCGAGCGCTCGAAGGAGAACGCCACAGATCTGCTGATGTTTGGGAAGGAGCTCAGTTCTTTAGGATCAGATGAGTCACCTGTGCCTGTCCTGGCATCCTGCAAGAGTCCTTGGGCTGCTCTCAGACGCTCAGTCAAAGGGCTTTCTGTTGAGTTCTCACTTCTGTCTGAAAAAGCTGCCCAACAGGGCAGAAGAGAGGAGGATGATGTGGTGGAAAAACTGAATCTGTTCCTGGACTTGCTGCAGTCGTACAGGGACTTATGTGAACGGCATGAGAAAGGGGTCTTGCACGAACACCAGCGCGCGCTGCAGAAGTACGGTGTCATGAAAAGACAAATGCTGAGTGCCACGGTTCAGCCTAAAGAACAGGTTTCTGTCGAACAGCTGGAGTCCCGCATTGTCCAGCAAGAAAACGCCATCCAGGCCATGGAGCTGCGTAACTACTTCTCCCTGTTCTGCCTGCACCAGGAGAGCCAGCTCATGTTCACATACCTGCCCATTACGTCTCACATCCTGGGGGCATTTGTAAGCTCCCAGGTGCAGGGACATAAAGAGATGGGTGAGGTGTGGCAGGATCTTCATTCCAAGCTTAAAAGTCTTTTTGGGGACGGCAATGGACAGTCTCCGCCTCTCAGCCCAAAATAGCCTCCCTTCTGTGCTTCCAGAATCGAAAGAAAATGAACTCCAGCCTGTTTTGAATAGCAGGAGTATTCTTTCTTGCATAGAGTTATGGGGAACTGCTTACGTGTGAACGTGTTATGCGGCAGTTCCTAAAACCTGTCGAAAAGTGCCCTTCATTTTGTAGAGTTTGAACAAACTGATGTTTAAAATAGGCTAATGCTGTTGAGAACAAGCTGAGGAAATGCGAAAAGATGCTACAACACTGTATTAATGTTAAGTGTATGCAAAGCtgatgctgttgttttaaaatgtaagcaaagCTGAAAGAGAAATTTTAGATTATACAAAACAGTGCATTTAGAGAAAGATGACTTATAGCTAGTTTAGTGCAATATAGAGAAATGAACTGAGAAGCTAATAGCCAGAGCGGTGGTCAGTCGAATATACACAGCAACACAGGAAATATGCAGAAATGATGTTATTAGTTGCAAAGACTTCATATTCTTCCTTGTTCGTGGTTTAAGCTGACAGATCTGGTTGtctgtttttaaatcttatGACTTGCGCTTCCTTGTGATTGCagctttttcacatttcatctTTATTTGTAAGTAAtatttacactaccattcaacAGTCTGGATTTagcaagattttattttttgaaggaAATAAACATTGTAATTTAGCAAAAGtcacagtgaagacatttatattacTAAAGAtcctgtttcaaataaatgctgttcttttgtacTTCCCGTTCATTAAAGTATAAAGTCAACTTGAATCGGCACAAATGTTTCCCTCAATGACAAGAATGAATATTTTGAGCAGGAATAGTATACCTGTATTCTTGCTGAGCGTTCCCCGTGAGGTATTCAAACttctgaacagtagtgtatgcatgcaaacactttctgttttgtttcagagATTCGAAACGTTTTAAGTAGTAAATACAACGAGCATGGTTATTAATTGCTTATTATTAGCTGCTCTATACTCCAAAGACCTGTTTTCATTCAATAAATCGTGAAGGTCTGAAATTTTCTCACCGCTAGTCAGCGATCAAGTGAATTATACTTCAACATgtgtgtgaaaaacattttacttttaccaTAAAGTTGTTGTTTCTGGATAATGCACGTACCACACATGTTGCTGTCTTAACTGTTTAACATTCTACAAAACAGAGCTTATTATTATTGACTGTATGTCTTTATGTTTCTACTAGGTGAGAGGCATTAAAGAAATGGAAACTGT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17922 SNX8, MVP1; sorting nexin-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30709 lncRNA upstream 51894 16307798 ~ 16308018 (+) True G20656
TU30699 lncRNA upstream 67106 16292605 ~ 16292806 (+) True G20647
XR_006248599.1 lncRNA upstream 479243 15879468 ~ 15880669 (+) True LOC122333245
TU30493 lncRNA upstream 480583 15879130 ~ 15879329 (+) True G20469
TU30492 lncRNA upstream 481486 15878189 ~ 15878426 (+) True G20468
XR_006250530.1 lncRNA downstream 226791 16596292 ~ 16597215 (+) True LOC122342129
TU30836 lncRNA downstream 413733 16783234 ~ 16783841 (+) False micall2a
TU30837 lncRNA downstream 414776 16784277 ~ 16784497 (+) False micall2a
TU30839 lncRNA downstream 417331 16786832 ~ 16787050 (+) True G20744
TU30900 lncRNA downstream 619711 16989212 ~ 17052645 (+) True G20798
XM_043235266.1 mRNA upstream 58688 16293222 ~ 16301224 (+) True lfng
XM_043235826.1 mRNA upstream 130734 16222200 ~ 16229178 (+) True chst12a
XM_043235238.1 mRNA upstream 138697 16212367 ~ 16221215 (+) True eif3ba
XM_043234675.1 mRNA upstream 152066 16179620 ~ 16207846 (+) True gna12a
XM_043235413.1 mRNA upstream 184822 16150853 ~ 16175090 (+) True card11
XM_043235306.1 mRNA downstream 3268 16372769 ~ 16375491 (+) True mrm2
XM_043235845.1 mRNA downstream 91817 16461318 ~ 16462690 (+) True LOC122342073
XM_043235699.1 mRNA downstream 104321 16473822 ~ 16475189 (+) True LOC122341966
XM_043228944.1 mRNA downstream 328459 16697960 ~ 16699167 (+) False LOC122331507
XM_043225482.1 mRNA downstream 330920 16700421 ~ 16715677 (+) True tmem184a
TU30661 other upstream 154744 16179910 ~ 16205168 (+) False gna12a
TU30209 other upstream 1175039 15149112 ~ 15184873 (+) True G20286
TU30221 other upstream 1190654 15168338 ~ 15169258 (+) True G20295
XR_006250537.1 other upstream 1689232 14670596 ~ 14670680 (+) True LOC122342191
XR_006250538.1 other upstream 1693383 14666446 ~ 14666529 (+) True LOC122342192
TU30773 other downstream 321202 16690703 ~ 16699482 (+) True LOC122331507
TU30774 other downstream 321202 16690703 ~ 16699482 (+) False LOC122331507
TU30775 other downstream 328498 16697999 ~ 16699482 (+) False LOC122331507
unassigned_transcript_287 other downstream 636413 17005914 ~ 17005985 (+) True trnat-cgu_1
XR_006250523.1 other downstream 743651 17113152 ~ 17117041 (+) False nsmce1

Expression Profile