RNA id: XM_043235358.1


Basic Information

Item Value
RNA id XM_043235358.1
length 2912
RNA type mRNA
GC content 0.50
exon number 10
gene id prkacaa
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6630997 ~ 6646901 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTTTGCGCGGCCATTTCGCTAACAAACACACCGCGGAGGATCATCAAAGGATTATGAATGAAACGGATTCTGTATTGAGAGAGCAAAACACCGCGCCCGCTTACAAAGACGGAACGCGAACAGAGAAACTTGTGTTAATGAAACGAAAATAGATGACGTTATTTGTCAGTTTGCGGGGGTGGGATAAAATCCTGCAGACCGATAGCGTTCGGCCAATCATCGCTCTCCCTGCGTTGGATCGCTGAGCTCTTGTCCAATCGGCTGCGCGCTCTGGCGGCGCGTCACAAGCGAGACGGCCAATAGGCGTCGCGTAGGTCTCGCTGAAGCAGGAGTTCCCTGTAGCTGTGGATTGAGGATTAATGGAAGGGGTCTGACTGTCGAATTATGCGAGCTACATAGCGCACACGACCGAATTGCTTCATcaacacaaacaagcaaacgATCACGCTACCGATAAGGCGCGGCGAAGTCGGCGTGCTGCGACGGGAATCGCGCGCGGACGGTGAAAACGAGGGCTTGTGGCGCTCAAGAGGAAAGTCGAGGGCCTCGCTGAGGGTTAGCGGAGCGAGGAAGAGGAGcgagagaaggagaagaagacgGGCTCGTAGTGCTATTTCAGCGGACCCGACCCGACCCACGAGAGCCGAGAGACGTTACCGAAACCGTAGCACTGCAACCAGACAGCTACTGTTAGCTAGCTAGCGCTCGCTCGCTAGCTAGCTAACCAACTAACTAACCAGCTCCTCGGTCTCCGGACTTTATGTGATCTGACAGCGTACGGTGATCCTGCGAGTTATGATCAGACATAGCTAGTGCAACGGACGCAGAAATTGTATGAGCAGCAAGGGGACGGAGTCTGAAGACAGTTGGCGTCAAGAAAAGTCGATTTAGATCTGTTATACCTGGCCTGCAATCATGGGCAACGCGCCCACCGCCAAGAACAAGGGCAATGAGATGGAGAGCGttaagGAGTTTCTTGCTAAAGCCAAAGAAGATTTCCTAAAGAAATGGGAGAACCCAGCACAGAATACTGCATCTCTGGACCATTTTGAGAGGTTGAAGACTCTAGGCACCGGCTCGTTTGGACGAGTCATGCTAGTCAAGCACAAAGAATCAGGCCAGCATTTTGCCATGAAGATCCTCGACAAACAGAAGGTGGTGAAACTGAAACAGATAGAACACACACTGAATGAGAAACGCATCCTGCAGGCCGTCAGCTTCCCCTTCCTTGTGCGATTGGAGCACTCGTTCAAGGATAATACTAACCTGTATATGGTAATGGAGTATGTTCCTGGAGGTGAGATGTTCTCTCACTTACGTAGAATCGGCCGGTTTAGTGAGCCTCATGCCCGCTTCTACGCCGCCCAGATAGTTCTGACCTTTGAATACCTTCACTCACTCGATCTTATCTACCGAGATCTGAAGCCTGAAAACCTGCTCATAGACCAGCAGGGCTACATACAGGTAACAGATTTTGGATTTGCTAAACGTGTAAAGGGCAGGACCTGGACACTGTGTGGCACACCTGAGTACCTGGCGCCAGAAATCATCCTCAGTAAAgGTTATAATAAAGCAGTGGACTGGTGGGCTCTGGGAGTGCTGATCTATGAAATGGCTGCCGGTTACCCTCCGTTCTTTGCCGACCAGCCCATCCAGATCTACGAGAAGATTGTTTCTGGGAAGGTTCGCTTCCCCTCACATTTTAGCTCTGACCTGAAGGACCTGCTGAGGAACCTGCTGCAGGTAGATCTGACGAAGCGCTTCGGGAACCTCAAGAACGGCGTCAATGACATCAAGGGCCACAAATGGTTTGCAACCACCGACTGGATCGCAATCTACCAGAAGAAGGTGGAAGCCCCCTTCATCCCCAAGTGCAAAGGCCCCGGCGATACCAGCAACTTCGACGACTACGAGGAGGAAGAAATCCGGGTCTCTTTCACAGAGAAATGTGGAAAGGAGTTTGCTGAATTCTAGAAGTAGCGGCGGAGGAGAGGGATGGAGAGAAATTAGATGTGGGgcaacagagagaagaaaacgTTTTCcagggtggtggtggtggtggtgatgatgatgatgatgatggactGGGCTGAGCCTTATGCGGTAACAACAACGTAGAGCCCTCACACGCAGACGGAGGGAGAAGAAGAACCAAGTCCAGAGAGAGACGCCAGCAGTGTTGCCTTTTCAGATCCTTCGTCACTTGTTACTTGTCCATTTTCATGTTTTCCCTCTTGTTTGGTAGCCAGGGTCCATTGGGCAGAGATTCGGTCACTTCTCTGTGACTGGCTGGCATGGGGATATTTGtgacttcttctttttttttttgttttttttgattttcCAGAGATATAGAAGTTACTTTCTGGTACTGAATTTTGGCTTCTCCAGAGAAAATGACCCCCCCTCcctctttttttggttttttttaattagcaaaggTGTCCTTGCTCTGTAGTTCTCCACCCCGTCACATCATGTTTACTTCCTGTGCACCTATCGGCACCCAACGCCAAACTCGAACCCGAATTACCGAATCATCACCCATTTCTCACGTGGATTTCAAGCATCACGCCACCGTCCTTCAAATGCATCATCTCGTATTAATTGGCTACGGTGCTCTAAGATCAGACAGAATCGGCCGCTTAGTATAAAGATTGTCAATTAGGATGATCGTTAGCCATTCTccatattatttaatgcattttaaacgaGTATGTTTGTGCTCAAGCCCATAGAATGTGCTTTGTGGCTGAAAGCGGCCACCGAAGAGACCGCGGCGCTATTTTAAACGACACAACTGTAGCATGCAAGCGCACTTGAAGCTCCGAAACCGTTATTTTACACGTTTTCTCTGCTGGCTGTGATCCTGAGGTAAATTTCCAGAGATAAACTAACAAAACGCGGAACT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04345 PKA; protein kinase A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26329 lncRNA upstream 5701 6623688 ~ 6625296 (+) True G17630
TU26258 lncRNA upstream 155378 6475099 ~ 6475619 (+) True G17584
TU26226 lncRNA upstream 194029 6436732 ~ 6436968 (+) True G17560
TU26186 lncRNA upstream 212634 6417662 ~ 6418363 (+) True G17524
TU26190 lncRNA upstream 277172 6346536 ~ 6353825 (+) True G17528
TU26379 lncRNA downstream 57513 6704414 ~ 6704702 (+) True G17662
TU26380 lncRNA downstream 58294 6705195 ~ 6705405 (+) True G17663
TU26412 lncRNA downstream 200037 6846938 ~ 6847606 (+) True G17683
TU26442 lncRNA downstream 255845 6902746 ~ 6903161 (+) True G17699
TU26448 lncRNA downstream 275295 6922196 ~ 6976265 (+) True G17704
XM_043235364.1 mRNA upstream 560 6626367 ~ 6630437 (+) True asf1ba
XM_043234875.1 mRNA upstream 12644 6614524 ~ 6618353 (+) True tubb4bl
XM_043234876.1 mRNA upstream 23328 6606688 ~ 6607669 (+) True LOC122341485
XM_043235678.1 mRNA upstream 31915 6584504 ~ 6599082 (+) True LOC122341958
XM_043235679.1 mRNA upstream 31915 6594985 ~ 6599082 (+) False LOC122341958
XM_043235360.1 mRNA downstream 2772 6649673 ~ 6656616 (+) True samd1a
XM_043235363.1 mRNA downstream 19076 6665977 ~ 6670009 (+) True dnajb1a
XM_043233643.1 mRNA downstream 23298 6670199 ~ 6678717 (+) True gipc1
XM_043233644.1 mRNA downstream 23298 6670199 ~ 6678717 (+) False gipc1
XM_043233639.1 mRNA downstream 32280 6679181 ~ 6684198 (+) True trim35-12
TU26266 other upstream 74247 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 74247 6504915 ~ 6556750 (+) True G17590
TU26037 other upstream 435975 6192740 ~ 6195022 (+) False LOC122341437
XR_006250506.1 other downstream 1009131 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 1302860 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 1302903 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 1303953 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 1313170 7960071 ~ 7962295 (+) False LOC122341279

Expression Profile