RNA id: XM_043235364.1


Basic Information

Item Value
RNA id XM_043235364.1
length 1536
RNA type mRNA
GC content 0.44
exon number 4
gene id asf1ba
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6626367 ~ 6630437 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCAATCCGCTTTCCGTGACGCGGACCGAAGCTGTCTGAAAGCTCTGGCGGGAGACAACGCAGCTTGTATTGTCTGTCAGTTTAAGTAACGGGTTCGGCGAAATAATATTCGTTTTACGTCTATACGTTACTTAAGGTCatatttagaattatatttttatattgggAGAAGAGACATCCTAGTCCTCTATCTTCCTACTTTAACAGTATAATCTACGGCACTGGACTAATAGCTCGCAAGCTAAGAAGCCAGACCTTCTAAGAGTTTTACTTGAAACGTCTGTGGAGTATTTAAAGCTGTTCTCGGTTTCTCGGCATTGTTTCGGGGGTAAATTGAGTCAGTTTTCTTGCCACTACAGTAACGTTAGAGCTATGGCAAAAGTGCAAGTGCTAAATGTAGCTGTCCTGGACAACCCGAGTCGATTTGGAAACCCGTTTCAATTCGAAATAACCTTTGAGTGCATGGAGGATCTTCCCGAGGATCTTGAATGGAAGATTATTTATGTGGGCTCAGCAGAAAGTGAAGAGTACGATCAGACTCTTGACTCTGTCCTGGTCGGTCCGGTTCCTGCAGGCCGAcacatgtttgtgtttcagGTGGATGCTCCAAACCCTGCCCTAATACCTGAGAGTGATGCTGTGGGTGTCACTGTTGTTCTGATCACATGCACATACAGAGGACAGGAGTTCATACGCATTGGCTACTATGTTAACAACGAGTACACAGACACTGAGCTTCGTGAGAATCCGCCCCTCAAACCTGATTATGGACAGCTCCAGAGGAACATTTTGGCTTCCAATCCAAGAGTAACCAGATTTCACATCAACTGGGAGGGATGTGCTGAGAAAATGGAGGATTCGGAGAACGTGGACCCTGCACCTAATGCCATGCTGCCCCCATCCTGCACTCCGGGGAAAGCACCTCCGCTAGGACTGGTGCCAGACAACTCCATGGACTGTTTGTAGTGACGCAGGCTCCTGCGAATAATCCTCGCATCTCAAGGCTCATCTGTGAGCTCAGGTCAATCTGGACACTGTGGAGGAGAGGCGGGATTATTCAgacacatcaaaaataaaaaatttatcaAAATTTCCTACAGTCATCGCACCTATTCGAAAACAAACAAGCGGTGTGCAGAATACGCCAAATCCTCCGGGATGCAATAAATGCGTTTGCTTTTCAGTTCAAAGCTTGAATGGAGAGCTGGTGAGTCATAAATCTAAGACACGATTTGGGTATTAGGATGTGCTGCATCTAATGCCATCAACCTTTTGATCCAAAACCGATCCTTTCTCAAACCGAAAGGGGATGGAAGATCAGCCCAGCAGATGtcaaatgcattattcatttaacagacTTCATCAGAAACACTTGTGTAAAAGGTTGCAGCGGACACTATTTTTGTAGGTGGTACTgtattatattgtgtgtgtgtgtgtgtgtatatatacatatatatatcttatgatttgtttgtttgtttttggtatGCTAGTTCtcagttaaataaatgttttcttacgTGATAATGGTCA

Function

GO:

id name namespace
GO:0006333 chromatin assembly or disassembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10753 ASF1; histone chaperone ASF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26329 lncRNA upstream 1071 6623688 ~ 6625296 (+) True G17630
TU26258 lncRNA upstream 150748 6475099 ~ 6475619 (+) True G17584
TU26226 lncRNA upstream 189399 6436732 ~ 6436968 (+) True G17560
TU26186 lncRNA upstream 208004 6417662 ~ 6418363 (+) True G17524
TU26190 lncRNA upstream 272542 6346536 ~ 6353825 (+) True G17528
TU26379 lncRNA downstream 73977 6704414 ~ 6704702 (+) True G17662
TU26380 lncRNA downstream 74758 6705195 ~ 6705405 (+) True G17663
TU26412 lncRNA downstream 216501 6846938 ~ 6847606 (+) True G17683
TU26442 lncRNA downstream 272309 6902746 ~ 6903161 (+) True G17699
TU26448 lncRNA downstream 291759 6922196 ~ 6976265 (+) True G17704
XM_043234875.1 mRNA upstream 8014 6614524 ~ 6618353 (+) True tubb4bl
XM_043234876.1 mRNA upstream 18698 6606688 ~ 6607669 (+) True LOC122341485
XM_043235678.1 mRNA upstream 27285 6584504 ~ 6599082 (+) True LOC122341958
XM_043235679.1 mRNA upstream 27285 6594985 ~ 6599082 (+) False LOC122341958
XM_043234813.1 mRNA upstream 55677 6519338 ~ 6570690 (+) True gcgra
XM_043235358.1 mRNA downstream 560 6630997 ~ 6646901 (+) True prkacaa
XM_043235357.1 mRNA downstream 5523 6635960 ~ 6646901 (+) False prkacaa
XM_043235356.1 mRNA downstream 7758 6638195 ~ 6646901 (+) False prkacaa
XM_043235360.1 mRNA downstream 19236 6649673 ~ 6656616 (+) True samd1a
XM_043235363.1 mRNA downstream 35540 6665977 ~ 6670009 (+) True dnajb1a
TU26266 other upstream 69617 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 69617 6504915 ~ 6556750 (+) True G17590
TU26037 other upstream 431345 6192740 ~ 6195022 (+) False LOC122341437
XR_006250506.1 other downstream 1025595 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 1319324 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 1319367 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 1320417 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 1329634 7960071 ~ 7962295 (+) False LOC122341279

Expression Profile