RNA id: XM_043235366.1


Basic Information

Item Value
RNA id XM_043235366.1
length 2269
RNA type mRNA
GC content 0.36
exon number 5
gene id LOC122341768
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4827437 ~ 4830481 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTACAACGTGTTTCTTCGGATTAAACCCATCGCtgtttgaataaagtttttcaaatgaaaacaaacatggcCGCTTCCGTATCGCGTGTTATATAGCAAAGTCCCTTTGGTTTTtgcttatcaaaaaaaaaaataataatagatgtgACGAGTTTTCTTCCAGCCTAACAATATTTGCCCCATCTGAAGCAAGGATGAGCCGCTCCACCAGCCTCCTACAGCAGATGACCATATTCACGACCGTAGTGACCGGCGGCGGATGTGCTATGATGTATTACCTCATGCAGAAAAATTTCGCTAAATCAGAGCATTACCAACTTGCCCTTGAACAGCTGAACAATAATTCCACAGCCATGGCCAGTCTGGGTGCTCCTCCTCTGAAGATACACAACATCCATTTATCTGACCGACACAACCGCATTGACCACAGCAGCGCTCAGCTAAAGATCCCAGTTACCGGGTCAAAGAATGGAGGTTACCTTTACACAGCTTCCACCAGAGACGCTTTTATGAACAGGTGGCACCTCCAGCAAGTGTTTCTGAAGCTAAGGGAAGGCGAGATCATCGAGATTTTCAACAAGACAGAATCTGAAGAGTAACTTCACatagaaacatttcatttcatttgttaataaataatgtttggcGGCCTGATTTTTAACTAATGTGATTATGGCATTCACATATATTTATctactttaaatgttaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtttcatgtGAAGCACTTTATTTTGGGGCTAGCTTggaaaaaagtgtttcattaaGGATGGGTGATGTATAAATCCTAcactgtaattttgttttgttatcttATTATTAAGCATGTCttttttcacacacatgcataaacataaacaatcttactacattaaatatatacagttggCATAAAGCTTTTAAAGCTGATCTAAACATGATGTGGAAGCAGGGTCACATAAATTCAAGTGAGTCAAGAGATAATAACCTTGATCTGTCTGATTTTCTAccttaaaatgtgtataaaaaagGCAATTCATTACAGCTTGTAATACCAACACTGGGGTCTTTGGATCATCTGTTATGCCATTGTGACTGGTCTTGTGTCATTGTAGTTACTAAACTTCACCAGTAGGTGTCATTAAAAGATTATTATTCAGTAACCCAAGAAATTTGAATCATGTATTtctcaattaataaataaagccgATGATTTAATTTAGTGAAAGATACAAAATCAGGTTTATGTAGTGCTGTAAGGTGTGATTAAGTTAGATTTGTCGTTATGAGTGACAATTTTGTGCcaattattttttctaaaataaaaaaattgctttaagcatgctgtatatataatataattttagcCATGTGCTAAAAATTTACTTTGGCACttgtgtcatttattcatttgacaaATTTAAACCATGCTCAGTTCATAATAACCTTAAGTATCATAAATCTATATTCACAGGAGGCAGCAGACATCATCCACAGAAACCCAGTGACCCAGTTTAGCCACAAGGCCTGTAGTaccagactctctctctctctctctcgctctgatCCACATCTCTCATTAGCTTTTTTGGTTGAAAGATTGAGGCCAGAAAACccaaaaagtttaaataaaaatcaacactTAAAGCTATGATGATgatgttaataataacaactattAGTGtaatattgcattcattttatgtattattcttAGTATGGAATAGTATATTAGTCATACAGTATGTAAAAACAACTTACTATATTTGCCAAAATGCTCAGCAACAGAACTGTGTACAAAATtgcatcccacaatgcaatgcatttacGCTAGCGCTTCACTCTCCAGTTCTCTCTGAATCTGTTTTGAATCTGAATAAACCTTGGTTCCAGACCAAGCTGGGGCTTCATGTCTCAAACTTTCCTCCTTCTCTCAAGCCCTTCAAAAATCCCACTGTTATCCCCCAAAACCACCCGCTCCTGCTCCAGAAATATCCTCATATTCCTCAGAGCTCTGGGGACCATCTGTCTTCACTTCCATCTGCCAAAACATCCATGCATATAAATACTTCCTCCAATCTGTTTTCATCTGATTTtgcaatatttcatattacatCACAGTGTATTAACCATTGCAACGTATAAATCCTTCATTAAATGACGTCAAGTTTctca

Function

GO: NA

KEGG:

id description
K18173 COA1; cytochrome c oxidase assembly factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25338 lncRNA upstream 33403 4792546 ~ 4794034 (+) True G17003
TU25320 lncRNA upstream 173183 4604054 ~ 4654254 (+) True G16991
TU25318 lncRNA upstream 176799 4602024 ~ 4650638 (+) True G16990
XR_006250421.1 lncRNA upstream 178266 4647091 ~ 4649171 (+) True LOC122341099
TU25309 lncRNA upstream 197774 4595665 ~ 4629663 (+) False G16982
TU25365 lncRNA downstream 34727 4865208 ~ 4867318 (+) True G17018
TU25289 lncRNA downstream 68358 4898839 ~ 4903279 (+) True LOC122333539
XR_006248639.1 lncRNA downstream 69016 4899497 ~ 4902880 (+) False LOC122333539
XR_006248640.1 lncRNA downstream 69943 4900424 ~ 4902886 (+) False LOC122333539
TU25293 lncRNA downstream 75175 4905656 ~ 4906320 (+) False G16981
XM_043229580.1 mRNA upstream 6781 4812939 ~ 4820656 (+) False wdr48b
XM_043229598.1 mRNA upstream 6781 4812975 ~ 4820656 (+) True wdr48b
XM_043229589.1 mRNA upstream 6781 4812987 ~ 4820656 (+) False wdr48b
XM_043229569.1 mRNA upstream 14968 4800795 ~ 4812469 (+) True LOC122332276
XM_043232430.1 mRNA upstream 28287 4795442 ~ 4799150 (+) True LOC122334471
XM_043235479.1 mRNA downstream 61634 4892115 ~ 4894607 (+) True LOC122341832
XM_043235740.1 mRNA downstream 77870 4908351 ~ 4934319 (+) False LOC122341982
XM_043235743.1 mRNA downstream 87899 4918380 ~ 4934319 (+) True LOC122341982
XM_043235739.1 mRNA downstream 87899 4918380 ~ 4934319 (+) False LOC122341982
XM_043235741.1 mRNA downstream 87899 4918380 ~ 4934288 (+) False LOC122341982
TU25278 other upstream 280870 4510737 ~ 4546567 (+) False G16978
TU25277 other upstream 294139 4470732 ~ 4533298 (+) True G16978
TU25283 other upstream 340973 4470732 ~ 4486464 (+) False G16978
TU25288 other upstream 368302 4458698 ~ 4459135 (+) False G16979
TU25239 other upstream 389236 4437288 ~ 4438201 (+) True G16955
TU25292 other downstream 75175 4905656 ~ 4906966 (+) True G16981
XR_006248137.1 other downstream 726527 5557008 ~ 5565974 (+) True LOC122331163
TU25833 other downstream 766618 5597099 ~ 5598232 (+) True G17302
TU25994 other downstream 1267720 6098201 ~ 6099152 (+) False fbxw9
TU26034 other downstream 1362259 6192740 ~ 6195022 (+) False LOC122341437

Expression Profile