RNA id: XM_043235393.1


Basic Information

Item Value
RNA id XM_043235393.1
length 6626
RNA type mRNA
GC content 0.46
exon number 10
gene id pde4a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17980222 ~ 18026132 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAAATCGGTTGCTCTCTTCCATAGCTTGCCTGTTTAAAGAGACAGTGCCATGAAGTCTTTGGATGTGCAGTTTTTGTATGGTTATGTCCATGCACCATAATACTATTTTGCTATAACCTGATCAGGCAGATGTCAGtatgaaaataaagcatcatttgTGTGTAAATTGGGCGACTGAGGCTGACCTTGTATAATGAAGCAGAAagcacacacattcacaccCATACGCAGGACCGTTCATGCAGAGATTAGCAGAGACACTAAAACCTAGATTCCCTCCCCTCTTTTTTGTCAGACTATTAAAtacatctctgtctctctctcacacacacacacatacagacgtTTCTCCATTTTTCCACACTCTTACATGCCGTCTGCCGCACATGCGCTCTCAGAGTGCGTGTGCACGCACACACGCCACTAGCACACACACCCAAGCACGCGCCTCCTGCCACAGCGGCTGATTAGCTTGCGAGATCTGTCTACAGCATCCAGGGAAACAGAGCGAGAGGCAGAGCATCGGCTGAGCTGCATCGGCGAGTCTGATGCCGTGTGTGGATTAAACAGCAGGGCTGCTGAAGAGAGCGCTGCGTTGTGCTGACAGGACTGGTATTGTGCTCCATGGACTGTGCGCTCTGAACACAACTCGCTGGGAACGCTGGGCCCGGGTCCTGGAGCTCTGCTGTGGGGGAGGGGTGTCGACGCAGGGAGAGAGAAAGGATGTTTTTCCAGACCACCGCTCTTTTGTAGTTTGACTTTCGACTAAAGGCCCCATCTCTTTTGCTTGTCTGTGTCTCCTTGATTCCTTCGTCCTCTCTGTCTCCTTTCATCCGTTTCTTTCTGCTATTacctgtgttgttgttgttttccttcATCCCCCTGTCATCCCTCAGTCTCCGTTAGCTATTGGCTCATCTTCATTTTCTCCCGTAATTCCTCTGTCCCCCTTCCCACAGCATCCTCTCTGTGTCCTTCAGACAGTCCCGTCTCTTTTACTCTCCATCTTTGTCCATTCCACCCCTCGCCGCTTTCTCCCCCTCCAGCTAGATCGGGGTCAGCTCTGCTCAGCTAAAGGGATGAGATGTAGTCCTTTTGGCCTGTGGATCTGGGCGGCTCCTGGCGGGCCGTTCACGGGGGACACTCGCCTGCAGATCGCCGTGGAGCCTGCTCAGTGGTTTTCAGGAGGGCCTGGTTCTCGTACCGCTTGCTGCATGTAGAGAGACAGTGTTAGCGAGCGCTCGTCGCTGGACTTTCACTGCCGCTTGCTCCCCGCCTCTTGGGGGCAGCCGTCACTCTGGAGCGTCCCGGCCTGCTAGGCTGCGGCCTCTCTGCCCACACCCTGACCACGCCCACATGCCGCTGGGGCACCCGCCGTGCTTCGGCCCCCGTGCACTTCCGTGCCTCTTGCCTTTGCCAGCGGTCCACGCCATCCGTCACCCTCAGCATGGGCGTACTGGAGGCCATTGACCCGCCGCCCTCTTCCTGCCCCTCACCTGTGCCCGGAGGCTACCGGCTGGCCCACTCCTCCAGCTACAGCCCCCTGCAGGGGAGAGGAGGGTCAGAGCTGGAGCTCGGGGCAGCCGCAGATGGGGTGCTGGATGGGGGTGGTCAGGCCACCGAGCGTAGGACCCCTTTCATGGATCTATTCTGTGAGACCTGCTCCAAACCCTGGCTGATTGGCTGGTGGGACCAGTTCAAGAGGATGTTAAACAGGGAACTGTCTCATCTGTCTGAGATGAGCCGCTCGGGGAATCAGGTGTCTGAATACATCTCCACTACCTTCCTAGACAAACAGAATGAGGTGGAGATCCCCTCACCTACACTCCGGGAGCGTGAAAAACCAATGTCTCACATCAGCGGTGTCAAGAAGCTTACACATAGCTCGAGCCTCACTAGTGCAGCCCTGCCCCGCTTCGGGGTCAAAACCGAGCAGGAGGACGCACTGGCCAGGgagCTGAATGACTTAAACAAGTGGGGCCTTAATATCTTCCGTGTGGCTGAGTACTCCAATAACAGACCTCTAAGTTGCATCATGTTTGCTATCTTCCAGGAAAGGGATCTATTAAAGACATTTCGGATCCCAGTGGATACGTTTATCACTTATGTGATGACACTGGAAGACCACTACCATGCCAACGTGGCCTATCACAACAGCCTGCATGCCGCTGATGTCACGCAGTCAACACATGTGCTGCTCTCCACACCGGCACTGGACGCCGTTTTTACTGATCTTGAAATCCTGGCTGCGTTGTTTGCTGCTGCCATTCATGATGTAGACCACCCTGGAGTTTCCAACCAGTTCCTCATCAACACCAACTCGGAACTGGCATTAATGTACAACGATGAGTCTGTACTGGAGAACCACCACCTGGCTGTAGGTTTCAAGCTTCTGCATGAGGAGAACTGTGACATCTTTCAGAATCTCACCAAACGCCAACGGCAGAGTCTGCGCAAGCTGGTCATCGACATGGTTCTGGCAACAGACATGTCAAAACATATGAGCTTGCTGGCAGATCTAAAGACAATGGTTGAGACCAAGAAAGTGACAAGTTCAGGCGTGCTGATGCTGGACCATTATAATGACCGGATACAGgtccTGAGGAACATGGTGCACTGTGCTGACCTTAGTAACCCAACCAAGCCCCTGGCAGTGTACAGGCAGTGGACTGAGCGTATTATGGAGGAGTTCTTCCGGCAGGGTGATAAAGAGCGAGAGCGTGGGATGGAAATCAGCCCCATGTGTGACAAACACACTGCGTCCGTGGAAAAGAGTCAGGTGGGATTTATTGATTATATCGTACATCCCCTTTGGGAGACCTGGGGGGACCTGGTCCACCCTGATGCTCAGGAAATTTTGGACACCCTTGAGGACAACCGGGACTGGTACCAAAGCACCATTCCCCAGAGCCCATCGCCACCACCGGACGGCCCAGATAATGAGCTTGAATCCTGCACGAACAAATTCCAGTTTGAGCTCACCCTGGAAGGAGAACCAGGACAGGTTGGCGCTCCCAGTCATAACCACATAGACAGCCATGGTCAAGAGGCAAAGAAAGAAGACGGGGAGGCAGATGAAGCTGAGGAGGACGAGATAGAGGAAAAAATGGAGGACGGCGAGGAGGTGACAGAGGTAGTGGTCGAGAGGTCGGGGCGGAGGCGACTGCAGGTTCAGTCAGTAGTCGAGGAGGAAGACGAAAGACAGTCTGACGAGAGCCCAGTGGAGgagacggaggaggaggagaagtcATCCTCTCCTATCGATGACACGTAATACTCGAGACTCAAGGAACAGCTGTCTGGCCCAGAGGGCTAAGTAGGGGCCATCCTTCAAAAAACTCTGTCCCTATTACGTTCACATAGGACTCTTCTGTTTCTGCTAGCTAGACCATGAACAGAATAAGTCTTGTGTACCAATCCAATAAGacatttgattttatgtttcAAAAAGGGAACTAAATAATATTGATATCAGAGAAGTATTTAACACAGCAACTGTAGATTTTGAGTGCAAGCTGGAGTCCGTCCAGCAGCAGCGAGGGTGAggtttgacagaaaaacaagaaaaattgCGGTGGGGTTTGTAAAGGGCCATTACGTCAGTGTAGCACTCTGGAATTTCTACACATACGCATACACACATCCACAGACGCACATGAATTCTGACTTAAAATAACGGTACCACACAGTACATGCAAACACAcggctgtgtgtctgtgtatgtgatcAGGGGGCTTGGATCTGAAAGGAATCTCTTTGGGAAAAAGCCATCATAAAAAGGAGCATCAGTGTCAATAATCAGTTTTTAAAGCATTCTAACAGGGACTTGAATCCTCAGAATTCACAAGCTGAGTGAAATCTGAGAGACTCTTTTTTCAATTTCTGTCATAGATTGAACACAGTTGCATCTGTTGGGAGAAAATAAGATAACGTCTGCTGTCCAGAAGACTGTGGAGGGATGAGTACATCGGAAATGATTTGTTAGCGGGTCCCACCCCCTCTTACCCTTTACCCAGGAGTGCTACCAGTGCAAGATGGCCGTGTGCCTTTCTGAACCACCAGCTTCAACTCTGGAGCTGTTGTGAAGCAATGCATCGTGGGACAGGAGTGTCtgcttttgtcttcatttttgattgtctctttctctttttaagcAATCTATCTCCATCCAATATGGTTTGTGCCGGCATGGAGCATTTGCGTTGTCTTTGTGATAGTTCCTGCTCTCATCTGTCAGTCTTCCTCGGTAGCTTTCAAGCCAACCGAGCATGTAGGGCCTTCATTAGATTTATCACCGTCACTGCTTACGGACTGCCCTCACTTTTcatgtgaataattaatgatagTCACTTTCTGAGGATAAGCCATGTGACGCTTTGAAACATATGTTTtggcttctttttgttttgttatatccATTCCTGCCAAATTTGTAAAAGCAGCAGTCTCCTCAATTGCAGCACACATTCGCACAAACTCCGTCACCTTCACCCACTCACGCTGGTAATGCATTCTCTACACCACAACACACTAAATTGTGTTTTGCCAAAGGAATGAGTACTTAACTGGGAACCTGGAGGAGCCTCGAATGGTGGCTAGAATAAAGCATAGAGAGAGAAGTCGAGGCatatctgaaaaagaaagacggTAGTGGTTAGATGTTGGAAAGACATGCAGCCATATTGAGTTTGATGCTTCTTTGCCTTAATGTCAACTGCAGGGTTTCTACCTGGCACTTTGTGGAATAATAAGATGTTGGCATTAGATCCCGGATCATTTGTTTCATGTCTTATGTATGCCTAGCTAACTGTCTGTGAATGCGCAATAGCTCCATCTAGAGGTGTAGGGTTTTTCTGCATGGCAAAGTGACTATAGCGGAGTACAGACAGAGAAAGCAGATCATACCATTAAAGGAAACTGTTGCTGTAATGTGTTTCGTGTCCAGCATCTTTTTAGTGGTGTCTATTTGACTTTTCACCAACTTTTaaagggagacagagagagatagaatgAGAGTGAATGAGAGTGAGTTCTCAGGTTGATGTTAGGTTTGCAATATTGCCTCTCTCATCTCtcagaattagtttttttggggggtttggTTTAAGTTCAGTTAATATGAACCAATTGTTGCTATATTGTGGGACAGCGTTTGTAAGCATCCCTCTTGAAATAAGATGGCAAGCTAGTTTCTGCTGGTCAGTAGCTTAGCTTTACACAAGCCTGTGCCTGCCAGAGCAGTAAATCGAGGTCATGTGTGATAACTGTACTTGTCTGCAACAGGATAAGAGGATGTCACAGTGTAAGTTATTTTAGTTGGTGGACCACAGGAGGAAAGGCAGAGGTTGCACGATCGGTTTGGTCGAACTGATGACATTCCCATATACATTTGCCTGTCTTACCTTAAAATTGCTTTGTTGTGTGGCTTTTCGTTAATGTTGTGAGCACTACGCTAACAAataatatttgccattttaacaCGACACTGTAGCAATTGTTTCttattaagaaattattaaaattaattcctTGCTGCCATTCTTTTTGGAtatcaaaaggaaaaaacaagTGTTTTCTTTGAACAGTTTgtgtacagtttttatttttgtatcattcTGGTTTGATGGTTTGGAAATCAAAAAACTACTATCTAATATAAATAGTAGACGAATCACTGCTTGTTTTGTATATACTGTAATGTTGAATTGTAAATTTGAGATCTCTCAGAATCAGTCACTGTCACAATGAATCACTTTTAGTTGTACTGAACTGTAGTTGAATTGTGGACTTTCATAAgcaccctccaccttccccttTCTTTCTCCTGTCATCTCCCTGCCATTCATTTGGGGGATTTTAGTCAACCTCCCACCAcctttaaatgtgaatatttgaaCTGTATTGGAAAACAGACTAATCATCCGTTGTTTCTAAAACTTGTCTTTAccagcactttatttttttctgtaggaAGTTGACGTGAGATGGCTGATATCAGGGGGAATGGCATGGAGTGTTGTATAGCATGGCACAGGGTAAGCACTTTAAATGGCTCGGTCCAAACGTTGTCTCTTTGGTCCTCAATGCCATTTTCTGCTAAAGCACTGAGCAACATCAGCTACTCTGTGTCAGTAATCTGCACTGTAATGGCTTTTAATAGGGGGTTTTAAATACTTCTGTGAGGTTAATGACCAAGAGACAGTCAGAAAGATGACGTGGCTTAATCAGAGAACAGTTTTTCTTTGTACTTTGAAGTCATGCCTCATGAGACTCTCCAATGAAATTATTCTCTGGgctttaaataatatgttacTTGTTCACAAGTTAtggtaataatataaatgaaaaagaaaacacaggaaaatgattgtaatatttgtacattATATTGCTGTAATGTGTATAATGTGTccaagttattttatattatattatttttatgaaaggtTTTCCTCTGAGAGAACTAAGTTgtcattttgtgaataaaatgcatttaataagcaaacagctatatataaaaaaacaaatatataaatatataccagtatattttttctttcactgtTCAGTACTGTAAAGTGTgttgaaaatacaaataaaggatgatttttctaataaatgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31215 lncRNA upstream 84207 17925351 ~ 17929616 (+) False si:ch211-66e2.5
TU31206 lncRNA upstream 112369 17900577 ~ 17901454 (+) False mrtfbb
TU31199 lncRNA upstream 150742 17862067 ~ 17863081 (+) True G20994
TU31133 lncRNA upstream 323535 17689415 ~ 17690288 (+) True G20951
TU31137 lncRNA upstream 362522 17650767 ~ 17651301 (+) True G20953
TU31280 lncRNA downstream 9407 18035539 ~ 18042621 (+) True G21049
TU31281 lncRNA downstream 9407 18035539 ~ 18042621 (+) False G21049
TU31282 lncRNA downstream 12429 18038561 ~ 18041682 (+) True G21050
TU31309 lncRNA downstream 90406 18116538 ~ 18119426 (+) True G21073
TU31312 lncRNA downstream 132039 18158171 ~ 18158546 (+) True G21076
XM_043228458.1 mRNA upstream 43149 17954849 ~ 17970674 (+) True raver1
XM_043228451.1 mRNA upstream 43149 17954850 ~ 17970674 (+) False raver1
XM_043234071.1 mRNA upstream 59491 17931705 ~ 17954332 (+) True tyk2
XM_043234073.1 mRNA upstream 59491 17931716 ~ 17954332 (+) False tyk2
XM_043234678.1 mRNA upstream 84189 17920917 ~ 17929634 (+) True si:ch211-66e2.5
XM_043231724.1 mRNA downstream 6580 18032712 ~ 18035362 (+) True dnase1
XM_043231733.1 mRNA downstream 6588 18032720 ~ 18035362 (+) False dnase1
XM_043235425.1 mRNA downstream 47943 18074075 ~ 18075616 (+) True LOC122341796
XM_043232241.1 mRNA downstream 71513 18097645 ~ 18101933 (+) False si:ch211-157c3.4
XM_043232257.1 mRNA downstream 71513 18097645 ~ 18101933 (+) False si:ch211-157c3.4
TU31207 other upstream 107180 17904604 ~ 17906643 (+) True polr3k
TU31132 other upstream 290400 17719182 ~ 17723423 (+) True G20950
TU31020 other upstream 817939 17163701 ~ 17195884 (+) False LOC122341316
XR_006250523.1 other upstream 896782 17113152 ~ 17117041 (+) False nsmce1
unassigned_transcript_287 other upstream 1007838 17005914 ~ 17005985 (+) True trnat-cgu_1
TU31290 other downstream 48265 18074397 ~ 18075574 (+) False LOC122341796
TU31277 other downstream 71513 18097645 ~ 18101932 (+) True si:ch211-157c3.4
XR_006250035.1 other downstream 379834 18405966 ~ 18425076 (+) True nubp1
TU31399 other downstream 417258 18443390 ~ 18517665 (+) True G21124
TU31393 other downstream 479998 18506130 ~ 18517665 (+) False G21124

Expression Profile