RNA id: XM_043235410.1


Basic Information

Item Value
RNA id XM_043235410.1
length 2760
RNA type mRNA
GC content 0.46
exon number 11
gene id hmgxb4a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24549227 ~ 24557112 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCAGGGATGGAAGGAGAGGTCGGTCTTGTTTCGGGTCGCAGCCAAAGAGAGAAGAGGCGCTCGTATAAAGATCTGTtgagagaggaagaagagatCGCAGCGCAGGTGCGCAAAACCTCCAAGAAACACCTCAAGGAGGAGATtctcacaagaaaaaaaagaagcacttGAGTGAGGACTACTATCACCGAGAGCATCACAGCTCCGGCCAGCCTCCCCACAAGAAGAAGCGCAAGTCTTCAGACCGCTCGCCCTCGCTCTCGTCCTCGTCCTCCTCTCACCCGTCCCACTCCACAGACACGGCCATGGGCCTCCTGGAGGCCATCACCTCGCCGCTGGCCACGGGCTCCGACCCGGCTCCTCACCTCCACAAGAAACCCTCCTACCCTCCCCAAGCCTCCTCGCACTCCTCCAAAGACCGCAAACGCGACGCCAGCTCCAAGAGCGGCCACTCCTTCTCGCACTCTCGTCCGCCCGGCTCATCTTCGTCCAAAAAGCATTCCTCTTCTTCGAAGTCGCTGCTGTTTCACGGAGGGGCCGGGAAGGGAGAGCCGCTGACGCTCTGCGAAGCTGAAGGCCTCAAGATGAAGCTCATCCTCTCCTCGAAAGAGAAGAATGAAGGTGTAGGGGCCAACGAGGGATTCTCCTTTCCGGTACATACTTCTTCCTCTTCAGGTGTCACAGGCCATCATCCGTCCTCCAACTCGAAGAAGGGAGCGatgaagaaggagaaagaaaaagataaaacgATGTCGAAGCCACCAAAGAAAAAGCAACACAGCCGAGAGCCGTTGCCTGTTGTGGGGAAAGAGGTGGAGGTTGTGGGGCATTACGGTGGGTCTTACGGCGGTATGGGAGGAGACAGCTCATCTTCAGGAGGAGAGCTGGAGGCCGGCGAGCTGGTGATTGACGACTCCTACACGCATCTctctaaaaagaagaaaaagagcaagaagagcaaaaagaaaaaagataaagagcgagacagagagaaaggatCCAGGGAGAAGAAACACAGCAAAGGAGGAAGTGGAGGCAAGAAAAGCGGCCCAGGTGATCAGTCTAGAAGCCACTCCCACTCCCATGGCTCATCCAATCACAGCTCTTCCGGTGGCATGTACGCTATGGCTCCACCCACATcatctcatcatcatcaaagCGTTGAACTGGTcggagagaagaaaaagaagaaggaaGACAAGGACAGAGACAAACATGACAAGGACAAGCCGAAGAAGAAGAACACGACAGCCTATCAGGTGTTCTGTAAGGAGTACAGGGTCAACATCAACGCGGAGCAGCCCGGGTTAGTATTCGGGGAGCTGAGTAAGAAACTCGCAGAGGTCTGGAAACAACTGCCCGAAAAAGACAAACTGGTTTGGAGGCAGAAAGCTCAATATCTCCAGCACAAGCAGAATAAAGCTGAAGCCATGACAGTCAAGCGGAAAACTTTAACAACCTCAGACAGTAAAAGTAAAGGCTCGAGTAAAGCTGTCAGTTTAGGGCCGGGATTGGCCCCTCAGGGCCGCTCGTCTTTGGGTATGTCCTTGTCTCCGGCGCGGGTACCCGATGTGGATCCCATAGACGCAGCAGCTCACCTGCAGCTGCTGGGCGAATCGCTGTCTCTGATTGGACACCGACTTCAGGAGACGGAGGGGATGGTGGCGGTGTCTGGCAGTCTTTCGGTGCTTTTAGACTCTATTTTATGTGCTCTCGGTCCATTGACCTGCTTGACGGCACAAGTTCCCCAGCTCAACGGCTGCCCACGCAACATCCTGTCAAATACTTTGGACAACATCGCTTACATAATGCCTGGACTATGAATCTCCTAAAAGGCACTTATAAGAGACTGGGTTACATTTGGACACGTTCTCCGAAGCACCAAACAGAGGAccagagtttctttttttaacttttttctgaTCCGTGGACATTCGTAGCCTctgacatgtttttaaaaatagtatttaaaatgttagcctttttttattgttgtaaaaaaaaaagatatccaATTTTTAGAGGACGCTTTTGAGGTTTCccttttgtgtttgtctttagTTTCGATGTCTGttttaagtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgttctaGTTCACACACTTTCATGATGTCCAAAACATTTAGGTTTTATACAATTATGTGCAGTTTCTTTTTAGGgccaagtgtttttttttttctaatttaatgttGAGTTAATTTATATCAACAGCAGTTTAACTGCACTGTCATCATTTTATGTCTtacatattgtatttttgtaatgcaaatgttgtaataatattatagttttcaACTTTTAGCACGTTTACAGGGCAAGcatgtgtaaaataattttaaaggtgcagtaagtactttttatatcatattaaattCATAGTTAATTTCAAATGTTGTTGTGCACAGACGTGAATCAGTGGACAAGGACTTTCCTCACATAACCATAATTTATAGTGCACTTTTGGTTGCAGAATAACTTGTCAGATACATTTGTTTGTGACATAGTTAATTGAAAAGTTTTGCGGTATCCAGCTCGACAGGCATCCGtatgcataaaaaatacttaCTGCACCAAcaatttagtttacatttaaagtgataATTTTAAACAAGTGACTGTTGGTAGTTTTAGAAGATGaaggaaaaaagtgaaatatatttgcattcatATGTGTGCATTTTGCATCaacttattttcattaaatctcAAAGACCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34101 lncRNA upstream 33764 24133726 ~ 24516998 (+) True G22968
TU34132 lncRNA upstream 100892 24268426 ~ 24449870 (+) True G22988
TU34142 lncRNA upstream 113746 24434055 ~ 24437016 (+) False G22996
TU34134 lncRNA upstream 211108 24338871 ~ 24339654 (+) True G22990
TU34125 lncRNA upstream 314687 24233766 ~ 24236075 (+) True G22982
TU34149 lncRNA downstream 599 24557711 ~ 24558261 (+) True G23002
TU34152 lncRNA downstream 5700 24562812 ~ 24563127 (+) True G23005
TU34151 lncRNA downstream 6134 24563246 ~ 24563895 (+) True G23004
TU34158 lncRNA downstream 55414 24612526 ~ 24612751 (+) True G23011
TU34166 lncRNA downstream 58055 24615167 ~ 24638416 (+) True G23014
XM_043235412.1 mRNA upstream 1669 24545411 ~ 24549093 (+) True ankrd54
XM_043228301.1 mRNA upstream 5548 24539323 ~ 24545214 (+) True foxred2
XM_043234711.1 mRNA upstream 19993 24525280 ~ 24530769 (+) True mcm5
XM_043228408.1 mRNA upstream 26162 24521028 ~ 24524600 (+) True gcat
XM_043234709.1 mRNA upstream 176198 24369213 ~ 24374564 (+) True LOC122341365
XM_043229063.1 mRNA downstream 1634 24558746 ~ 24562589 (+) True si:dkeyp-69e1.8
XM_043235192.1 mRNA downstream 57487 24614599 ~ 24618241 (+) True s1pr5a
XM_043235817.1 mRNA downstream 210517 24767629 ~ 24769271 (+) True LOC122342023
XM_043235813.1 mRNA downstream 214179 24771291 ~ 24781610 (+) True il12rb2l
XM_043235820.1 mRNA downstream 258761 24815873 ~ 24828439 (+) True LOC122342030
TU34113 other upstream 20199 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 101473 24446878 ~ 24449289 (+) True G22953
TU34141 other upstream 111299 24434055 ~ 24439463 (+) True G22996
TU34076 other upstream 453603 24095024 ~ 24097159 (+) True G22958
TU34052 other upstream 498899 24050738 ~ 24051863 (+) False LOC122342055
TU34183 other downstream 164414 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 164414 24721526 ~ 24811577 (+) False G23026
TU34203 other downstream 426237 24983349 ~ 24985917 (+) False LOC122342019
TU34266 other downstream 854806 25411918 ~ 25447270 (+) False G23061
TU34263 other downstream 888187 25445299 ~ 25447270 (+) False G23061

Expression Profile